Wall clock time and date at job start Tue Mar 31 2020 14:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47472 * 239.99934 * 3 2 1 5 5 H 1.48496 * 109.47259 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 120.00453 * 3 2 1 7 7 C 1.37882 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46910 * 180.02562 * 9 7 2 11 11 O 1.45203 * 109.47324 * 179.97438 * 10 9 7 12 12 C 1.34745 * 117.00395 * 179.97438 * 11 10 9 13 13 O 1.21496 * 119.99657 * 359.97438 * 12 11 10 14 14 C 1.47483 * 119.99765 * 180.02562 * 12 11 10 15 15 C 1.39603 * 120.50283 * 359.97438 * 14 12 11 16 16 N 1.31631 * 120.64308 * 180.02562 * 15 14 12 17 17 C 1.32417 * 121.81815 * 359.97438 * 16 15 14 18 18 O 1.35515 * 119.52607 * 179.97438 * 17 16 15 19 19 C 1.42901 * 116.99801 * 0.02562 * 18 17 16 20 20 C 1.52998 * 109.47046 * 179.97438 * 19 18 17 21 21 C 1.52995 * 117.50120 * 243.74689 * 20 19 18 22 22 C 1.52994 * 117.50083 * 175.08738 * 20 19 18 23 23 C 1.39248 * 120.94803 * 0.25615 * 17 16 15 24 24 Cl 1.73604 * 120.37631 * 179.74088 * 23 17 16 25 25 C 1.38059 * 119.24605 * 359.49284 * 23 17 16 26 26 H 0.96998 * 119.99843 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47008 * 59.99879 * 9 7 2 28 28 H 1.08999 * 109.46602 * 299.99732 * 9 7 2 29 29 H 1.09003 * 109.47410 * 59.99487 * 10 9 7 30 30 H 1.09007 * 109.47188 * 299.99770 * 10 9 7 31 31 H 1.08004 * 119.67741 * 0.02562 * 15 14 12 32 32 H 1.08996 * 109.47352 * 299.99667 * 19 18 17 33 33 H 1.08999 * 109.47144 * 59.99691 * 19 18 17 34 34 H 1.09003 * 115.54871 * 29.41967 * 20 19 18 35 35 H 1.09005 * 117.49956 * 0.02562 * 21 20 19 36 36 H 1.09005 * 117.50194 * 145.01822 * 21 20 19 37 37 H 1.09001 * 117.50003 * 214.98218 * 22 20 19 38 38 H 1.09004 * 117.49957 * 359.97438 * 22 20 19 39 39 H 1.08000 * 120.82799 * 180.26540 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 8 1.5191 -4.9196 -0.0020 12 6 2.2529 -6.0497 -0.0024 13 8 3.4662 -5.9861 -0.0027 14 6 1.5832 -7.3638 -0.0035 15 6 0.1898 -7.4489 -0.0036 16 7 -0.4108 -8.6202 -0.0040 17 6 0.2719 -9.7548 -0.0049 18 8 -0.3941 -10.9350 -0.0049 19 6 -1.8218 -10.8742 -0.0044 20 6 -2.3927 -12.2937 -0.0050 21 6 -3.2136 -12.7244 -1.2221 22 6 -3.9107 -12.4446 0.1116 23 6 1.6644 -9.7527 -0.0001 24 17 2.5446 -11.2491 0.0054 25 6 2.3371 -8.5471 -0.0049 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5563 -0.8920 28 1 0.6240 -2.5574 0.8880 29 1 2.8712 -3.6048 0.8890 30 1 2.8725 -3.6040 -0.8910 31 1 -0.4012 -6.5449 -0.0033 32 1 -2.1627 -10.3456 0.8858 33 1 -2.1632 -10.3452 -0.8941 34 1 -1.7732 -13.0497 0.4774 35 1 -3.3467 -11.9967 -2.0226 36 1 -3.1346 -13.7640 -1.5403 37 1 -4.2900 -13.3002 0.6704 38 1 -4.5027 -11.5327 0.1892 39 1 3.4166 -8.5156 -0.0056 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000181662377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:30 Heat of formation + Delta-G solvation = -77.803213 kcal Electronic energy + Delta-G solvation = -23529.371669 eV Core-core repulsion = 19657.209021 eV Total energy + Delta-G solvation = -3872.162648 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.23784 -39.92235 -38.66845 -37.15610 -36.89859 -36.20322 -33.40281 -32.81490 -31.42801 -30.17653 -28.10001 -25.48547 -24.38820 -23.97041 -22.84021 -21.47213 -21.09426 -20.75253 -19.03499 -18.07880 -17.61928 -16.72372 -16.53693 -16.09911 -15.98313 -15.71324 -15.44893 -14.77832 -14.58401 -14.32489 -14.10721 -13.72755 -13.30896 -13.30504 -12.85637 -12.38783 -12.37022 -12.08004 -11.87629 -11.72827 -11.42136 -11.30439 -11.14206 -10.97421 -10.83901 -10.79375 -10.56781 -10.43179 -10.14733 -10.05045 -9.72525 -9.68870 -9.35876 -8.84863 -8.47313 -6.13706 -4.18266 0.25719 0.61869 1.67682 2.33946 2.50208 2.95923 3.28266 3.31764 3.32578 3.35848 3.39855 3.80762 4.16539 4.33242 4.37606 4.41375 4.46747 4.60567 4.74003 4.80781 4.83567 5.07619 5.16960 5.19876 5.23056 5.32590 5.43235 5.65257 5.65381 5.66606 5.84025 6.00904 6.02695 6.56663 6.67255 6.81064 7.23139 7.49848 7.56974 7.81302 8.03655 8.19512 8.86915 9.46329 10.97679 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017526 B = 0.002226 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.214390 B =12577.927439 C =14078.506946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.528 4.528 8 H 0.059 0.941 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.351 6.351 12 C 0.512 3.488 13 O -0.510 6.510 14 C -0.199 4.199 15 C 0.210 3.790 16 N -0.532 5.532 17 C 0.362 3.638 18 O -0.287 6.287 19 C 0.099 3.901 20 C -0.161 4.161 21 C -0.176 4.176 22 C -0.167 4.167 23 C -0.124 4.124 24 Cl -0.036 7.036 25 C 0.027 3.973 26 H 0.264 0.736 27 H 0.029 0.971 28 H 0.029 0.971 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.189 0.811 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.117 0.883 35 H 0.098 0.902 36 H 0.098 0.902 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.450 -26.338 -0.269 26.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.566 4.566 8 H 0.077 0.923 9 C -0.012 4.012 10 C 0.004 3.996 11 O -0.267 6.267 12 C 0.355 3.645 13 O -0.400 6.400 14 C -0.203 4.203 15 C 0.053 3.947 16 N -0.256 5.256 17 C 0.183 3.817 18 O -0.192 6.192 19 C 0.024 3.976 20 C -0.179 4.179 21 C -0.213 4.213 22 C -0.204 4.204 23 C -0.154 4.154 24 Cl -0.008 7.008 25 C 0.002 3.998 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.206 0.794 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.135 0.865 35 H 0.116 0.884 36 H 0.116 0.884 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -5.013 -26.627 -0.270 27.096 hybrid contribution 1.379 1.013 0.003 1.711 sum -3.634 -25.615 -0.267 25.873 Atomic orbital electron populations 1.69955 1.06082 1.27164 1.49576 1.24978 0.94929 0.99395 0.94812 0.86524 0.79485 0.82442 0.78805 1.20057 1.21122 1.20050 1.20928 0.93168 0.90058 1.52467 0.92260 1.19181 0.94182 0.88900 0.98973 1.23740 0.96473 0.78095 1.01256 1.86553 1.41952 1.15583 1.82639 1.20490 0.85546 0.84978 0.73445 1.90826 1.14804 1.88211 1.46182 1.20077 0.94810 0.91942 1.13430 1.23174 0.91231 0.94894 0.85390 1.67668 1.39339 0.97835 1.20760 1.19750 0.87514 0.85752 0.88729 1.86254 1.22219 1.24677 1.86077 1.22296 0.76319 0.95750 1.03251 1.22142 0.94323 0.97165 1.04259 1.23132 1.03588 1.02858 0.91711 1.23011 0.93035 1.03829 1.00550 1.20609 0.89572 0.89791 1.15417 1.98385 1.74771 1.30486 1.97139 1.21479 1.01962 0.88050 0.88301 0.92613 0.95246 0.95246 0.92014 0.92011 0.79388 0.90446 0.90744 0.86542 0.88378 0.88394 0.88118 0.88239 0.81651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 2 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 3 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 7 C -0.53 -14.48 9.11 -34.44 -0.31 -14.79 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 16 10 C 0.08 1.62 5.41 37.16 0.20 1.82 16 11 O -0.35 -6.51 9.49 -40.62 -0.39 -6.89 16 12 C 0.51 8.56 7.90 34.50 0.27 8.83 16 13 O -0.51 -9.62 16.20 -19.26 -0.31 -9.94 16 14 C -0.20 -2.64 5.89 -104.84 -0.62 -3.26 16 15 C 0.21 2.54 10.78 -17.13 -0.18 2.36 16 16 N -0.53 -6.32 9.18 -12.92 -0.12 -6.44 16 17 C 0.36 4.22 7.49 -16.92 -0.13 4.09 16 18 O -0.29 -3.05 9.57 -18.24 -0.17 -3.23 16 19 C 0.10 0.84 5.58 37.16 0.21 1.05 16 20 C -0.16 -1.12 6.05 -90.63 -0.55 -1.67 16 21 C -0.18 -1.05 10.18 -26.70 -0.27 -1.32 16 22 C -0.17 -0.93 10.25 -26.70 -0.27 -1.20 16 23 C -0.12 -1.41 6.35 -39.27 -0.25 -1.66 16 24 Cl -0.04 -0.38 28.52 -51.86 -1.48 -1.86 16 25 C 0.03 0.33 9.50 -38.87 -0.37 -0.04 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 30 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 31 H 0.19 2.08 7.61 -52.48 -0.40 1.68 16 32 H 0.08 0.66 8.10 -51.93 -0.42 0.24 16 33 H 0.07 0.64 7.83 -51.93 -0.41 0.23 16 34 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.10 0.58 8.03 -51.93 -0.42 0.16 16 36 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.17 1.81 7.73 -52.49 -0.41 1.41 16 LS Contribution 362.90 15.07 5.47 5.47 Total: -1.00 -30.12 362.90 -8.78 -38.90 By element: Atomic # 1 Polarization: 1.72 SS G_CDS: -4.97 Total: -3.26 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -2.52 Total: -3.72 kcal Atomic # 7 Polarization: -32.15 SS G_CDS: 0.62 Total: -31.53 kcal Atomic # 8 Polarization: -19.19 SS G_CDS: -0.87 Total: -20.06 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.48 Total: -1.86 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -30.12 -8.78 -38.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181662377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.904 kcal (2) G-P(sol) polarization free energy of solvation -30.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds