Wall clock time and date at job start Tue Mar 31 2020 14:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86793 * 120.00130 * 2 1 4 4 H 1.48501 * 109.47472 * 239.99934 * 3 2 1 5 5 H 1.48496 * 109.47259 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47158 * 120.00453 * 3 2 1 7 7 C 1.37882 * 119.99727 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99935 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99959 * 0.02562 * 7 2 1 10 10 C 1.52996 * 109.46910 * 180.02562 * 9 7 2 11 11 O 1.45203 * 109.47324 * 179.97438 * 10 9 7 12 12 C 1.34745 * 117.00395 * 179.97438 * 11 10 9 13 13 O 1.21496 * 119.99657 * 359.97438 * 12 11 10 14 14 C 1.47483 * 119.99765 * 180.02562 * 12 11 10 15 15 C 1.39603 * 120.50283 * 359.97438 * 14 12 11 16 16 N 1.31631 * 120.64308 * 180.02562 * 15 14 12 17 17 C 1.32417 * 121.81815 * 359.97438 * 16 15 14 18 18 O 1.35515 * 119.52607 * 179.97438 * 17 16 15 19 19 C 1.42901 * 116.99801 * 0.02562 * 18 17 16 20 20 C 1.52998 * 109.47046 * 179.97438 * 19 18 17 21 21 C 1.52995 * 117.50120 * 243.74689 * 20 19 18 22 22 C 1.52994 * 117.50083 * 175.08738 * 20 19 18 23 23 C 1.39248 * 120.94803 * 0.25615 * 17 16 15 24 24 Cl 1.73604 * 120.37631 * 179.74088 * 23 17 16 25 25 C 1.38059 * 119.24605 * 359.49284 * 23 17 16 26 26 H 0.96998 * 119.99843 * 359.97438 * 1 2 3 27 27 H 1.09000 * 109.47008 * 59.99879 * 9 7 2 28 28 H 1.08999 * 109.46602 * 299.99732 * 9 7 2 29 29 H 1.09003 * 109.47410 * 59.99487 * 10 9 7 30 30 H 1.09007 * 109.47188 * 299.99770 * 10 9 7 31 31 H 1.08004 * 119.67741 * 0.02562 * 15 14 12 32 32 H 1.08996 * 109.47352 * 299.99667 * 19 18 17 33 33 H 1.08999 * 109.47144 * 59.99691 * 19 18 17 34 34 H 1.09003 * 115.54871 * 29.41967 * 20 19 18 35 35 H 1.09005 * 117.49956 * 0.02562 * 21 20 19 36 36 H 1.09005 * 117.50194 * 145.01822 * 21 20 19 37 37 H 1.09001 * 117.50003 * 214.98218 * 22 20 19 38 38 H 1.09004 * 117.49957 * 359.97438 * 22 20 19 39 39 H 1.08000 * 120.82799 * 180.26540 * 25 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0017 10 6 2.2451 -3.6621 -0.0015 11 8 1.5191 -4.9196 -0.0020 12 6 2.2529 -6.0497 -0.0024 13 8 3.4662 -5.9861 -0.0027 14 6 1.5832 -7.3638 -0.0035 15 6 0.1898 -7.4489 -0.0036 16 7 -0.4108 -8.6202 -0.0040 17 6 0.2719 -9.7548 -0.0049 18 8 -0.3941 -10.9350 -0.0049 19 6 -1.8218 -10.8742 -0.0044 20 6 -2.3927 -12.2937 -0.0050 21 6 -3.2136 -12.7244 -1.2221 22 6 -3.9107 -12.4446 0.1116 23 6 1.6644 -9.7527 -0.0001 24 17 2.5446 -11.2491 0.0054 25 6 2.3371 -8.5471 -0.0049 26 1 -0.4850 0.8400 0.0004 27 1 0.6246 -2.5563 -0.8920 28 1 0.6240 -2.5574 0.8880 29 1 2.8712 -3.6048 0.8890 30 1 2.8725 -3.6040 -0.8910 31 1 -0.4012 -6.5449 -0.0033 32 1 -2.1627 -10.3456 0.8858 33 1 -2.1632 -10.3452 -0.8941 34 1 -1.7732 -13.0497 0.4774 35 1 -3.3467 -11.9967 -2.0226 36 1 -3.1346 -13.7640 -1.5403 37 1 -4.2900 -13.3002 0.6704 38 1 -4.5027 -11.5327 0.1892 39 1 3.4166 -8.5156 -0.0056 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000181662377.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:30 Heat of formation + Delta-G solvation = -93.912470 kcal Electronic energy + Delta-G solvation = -23530.070219 eV Core-core repulsion = 19657.209021 eV Total energy + Delta-G solvation = -3872.861198 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.24334 -41.21792 -39.52666 -37.86049 -37.77086 -37.62299 -35.43300 -33.80735 -32.69754 -31.84240 -28.87343 -27.20525 -25.63465 -24.97099 -23.28551 -23.10822 -22.26882 -21.68149 -19.93296 -19.37971 -18.62127 -18.37845 -17.67247 -17.48989 -17.37119 -16.58248 -16.51557 -16.33288 -15.48174 -15.36245 -15.10831 -14.68453 -14.55523 -14.49496 -14.34603 -14.07978 -13.25596 -13.15489 -13.05980 -12.74862 -12.61351 -12.57123 -12.44210 -12.35317 -12.21819 -12.07412 -11.60256 -11.47780 -11.46453 -11.41572 -11.13037 -11.03554 -10.92255 -10.58299 -9.78833 -8.25051 -6.37490 -0.77395 -0.32256 0.76363 1.27584 1.42211 1.45901 1.49634 1.53760 1.64334 2.34326 2.41342 2.79758 2.91001 3.09762 3.29448 3.52072 3.53832 3.78495 3.82218 3.90963 4.06640 4.17778 4.21966 4.26245 4.31104 4.46414 4.54002 4.65765 4.73720 4.78246 4.84746 5.00575 5.18720 5.22978 5.23338 5.48934 5.50808 5.75539 5.82747 6.08860 6.27197 6.59943 6.76219 7.31971 8.87087 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017526 B = 0.002226 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.214390 B =12577.927439 C =14078.506946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.550 4.550 8 H 0.065 0.935 9 C 0.030 3.970 10 C 0.092 3.908 11 O -0.354 6.354 12 C 0.517 3.483 13 O -0.533 6.533 14 C -0.210 4.210 15 C 0.219 3.781 16 N -0.535 5.535 17 C 0.365 3.635 18 O -0.289 6.289 19 C 0.096 3.904 20 C -0.172 4.172 21 C -0.176 4.176 22 C -0.158 4.158 23 C -0.126 4.126 24 Cl -0.024 7.024 25 C 0.036 3.964 26 H 0.267 0.733 27 H 0.010 0.990 28 H 0.010 0.990 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.197 0.803 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.113 0.887 38 H 0.102 0.898 39 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.253 -27.259 -0.276 27.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.192 4.192 3 Si 0.794 3.206 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.191 1.191 7 C -0.588 4.588 8 H 0.084 0.916 9 C -0.007 4.007 10 C 0.019 3.981 11 O -0.270 6.270 12 C 0.362 3.638 13 O -0.424 6.424 14 C -0.214 4.214 15 C 0.061 3.939 16 N -0.259 5.259 17 C 0.185 3.815 18 O -0.194 6.194 19 C 0.022 3.978 20 C -0.190 4.190 21 C -0.213 4.213 22 C -0.195 4.195 23 C -0.156 4.156 24 Cl 0.004 6.996 25 C 0.011 3.989 26 H 0.076 0.924 27 H 0.028 0.972 28 H 0.028 0.972 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.213 0.787 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.134 0.866 35 H 0.116 0.884 36 H 0.125 0.875 37 H 0.131 0.869 38 H 0.121 0.879 39 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -4.817 -27.587 -0.277 28.006 hybrid contribution 1.243 1.124 0.002 1.676 sum -3.575 -26.462 -0.276 26.704 Atomic orbital electron populations 1.70076 1.07710 1.28273 1.50391 1.25922 0.95823 1.03273 0.94207 0.85421 0.78216 0.77684 0.79269 1.19134 1.20644 1.19119 1.21353 0.93749 0.91254 1.52421 0.91648 1.18987 0.94365 0.90335 0.96985 1.23254 0.95116 0.78319 1.01413 1.86527 1.41881 1.15451 1.83157 1.20918 0.85328 0.85196 0.72329 1.90812 1.15756 1.88409 1.47464 1.19826 0.95226 0.90438 1.15941 1.23266 0.90811 0.95344 0.84449 1.67726 1.39246 0.97793 1.21175 1.19924 0.87821 0.85987 0.87747 1.86271 1.23422 1.24164 1.85531 1.22454 0.75143 0.97014 1.03203 1.22126 0.95219 0.96132 1.05569 1.23213 1.03062 1.03365 0.91683 1.23109 0.91835 1.04427 1.00144 1.20604 0.89636 0.90110 1.15271 1.98391 1.74477 1.29619 1.97070 1.21534 1.02329 0.87661 0.87370 0.92382 0.97206 0.97206 0.91817 0.91813 0.78660 0.90467 0.90797 0.86601 0.88446 0.87510 0.86880 0.87915 0.80830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.34 13.29 21.45 0.28 -54.05 16 2 C 0.01 0.38 5.46 84.66 0.46 0.85 16 3 Si 0.97 42.90 29.54 68.60 2.03 44.92 16 4 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 5 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 6 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 7 C -0.55 -30.35 9.11 25.60 0.23 -30.12 16 8 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 9 C 0.03 1.57 5.35 29.85 0.16 1.73 16 10 C 0.09 3.92 5.41 71.98 0.39 4.31 16 11 O -0.35 -13.17 9.49 -56.55 -0.54 -13.71 16 12 C 0.52 17.13 7.90 70.26 0.55 17.68 16 13 O -0.53 -19.93 16.20 19.85 0.32 -19.60 16 14 C -0.21 -5.45 5.89 -20.01 -0.12 -5.56 16 15 C 0.22 5.13 10.78 85.05 0.92 6.05 16 16 N -0.54 -12.16 9.18 -307.68 -2.82 -14.98 16 17 C 0.37 8.05 7.49 84.85 0.64 8.69 16 18 O -0.29 -5.79 9.57 -88.17 -0.84 -6.63 16 19 C 0.10 1.54 5.58 71.98 0.40 1.94 16 20 C -0.17 -2.16 6.05 -10.80 -0.07 -2.23 16 21 C -0.18 -1.83 10.18 30.61 0.31 -1.52 16 22 C -0.16 -1.47 10.25 30.61 0.31 -1.16 16 23 C -0.13 -2.71 6.35 22.47 0.14 -2.57 16 24 Cl -0.02 -0.47 28.52 -2.72 -0.08 -0.54 16 25 C 0.04 0.82 9.50 22.73 0.22 1.04 16 26 H 0.27 14.72 8.31 -92.71 -0.77 13.95 16 27 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.06 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.06 2.68 8.14 -2.38 -0.02 2.66 16 31 H 0.20 4.22 7.61 -2.91 -0.02 4.20 16 32 H 0.08 1.24 8.10 -2.39 -0.02 1.22 16 33 H 0.07 1.19 7.83 -2.39 -0.02 1.17 16 34 H 0.12 1.47 8.14 -2.39 -0.02 1.45 16 35 H 0.10 1.02 8.03 -2.38 -0.02 1.00 16 36 H 0.11 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.10 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.17 3.60 7.73 -2.91 -0.02 3.58 16 Total: -1.00 -63.31 362.90 3.98 -59.33 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: 1.07 Total: 6.16 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: 4.56 Total: -0.89 kcal Atomic # 7 Polarization: -66.50 SS G_CDS: -2.54 Total: -69.04 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -1.06 Total: -39.94 kcal Atomic # 14 Polarization: 42.90 SS G_CDS: 2.03 Total: 44.92 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -0.08 Total: -0.54 kcal Total: -63.31 3.98 -59.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000181662377.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.583 kcal (2) G-P(sol) polarization free energy of solvation -63.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds