Wall clock time and date at job start Tue Mar 31 2020 13:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31630 * 1 3 3 Si 1.86797 * 120.00061 * 2 1 4 4 H 1.48496 * 109.47530 * 179.97438 * 3 2 1 5 5 H 1.48509 * 109.47123 * 299.99937 * 3 2 1 6 6 H 1.48500 * 109.47088 * 59.99502 * 3 2 1 7 7 C 1.38801 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99515 * 180.02562 * 7 2 1 9 9 S 1.76198 * 119.99967 * 359.97438 * 7 2 1 10 10 C 1.80998 * 99.99999 * 180.02562 * 9 7 2 11 11 C 1.50693 * 109.47274 * 180.02562 * 10 9 7 12 12 O 1.21281 * 120.00328 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00452 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00430 * 179.97438 * 13 11 10 15 15 H 1.09001 * 109.59499 * 34.52412 * 14 13 11 16 16 C 1.52882 * 109.72808 * 274.13188 * 14 13 11 17 17 C 1.52144 * 110.79658 * 323.48260 * 16 14 13 18 18 C 1.51430 * 113.44969 * 292.46577 * 17 16 14 19 19 O 1.43135 * 110.95011 * 65.45836 * 18 17 16 20 20 C 1.36162 * 115.61937 * 273.23426 * 19 18 17 21 21 C 1.38862 * 119.77945 * 251.73761 * 20 19 18 22 22 C 1.38379 * 119.65832 * 177.79835 * 21 20 19 23 23 F 1.35104 * 119.91600 * 180.02562 * 22 21 20 24 24 C 1.38522 * 120.17478 * 0.02654 * 22 21 20 25 25 C 1.38344 * 120.04581 * 0.40890 * 24 22 21 26 26 C 1.37966 * 120.34052 * 70.29749 * 20 19 18 27 27 H 0.96995 * 120.00085 * 0.02562 * 1 2 3 28 28 H 1.08994 * 109.47038 * 59.99932 * 10 9 7 29 29 H 1.09004 * 109.47009 * 300.00191 * 10 9 7 30 30 H 0.97006 * 119.99777 * 0.02562 * 13 11 10 31 31 H 1.09002 * 109.20807 * 83.82307 * 16 14 13 32 32 H 1.09000 * 109.21035 * 203.13900 * 16 14 13 33 33 H 1.08997 * 108.68828 * 171.43943 * 17 16 14 34 34 H 1.09004 * 108.58667 * 53.41585 * 17 16 14 35 35 H 1.08999 * 109.18161 * 305.07967 * 18 17 16 36 36 H 1.09005 * 109.13965 * 185.80851 * 18 17 16 37 37 H 1.08006 * 120.16929 * 357.81857 * 21 20 19 38 38 H 1.07999 * 119.98044 * 180.42808 * 24 22 21 39 39 H 1.07999 * 120.16219 * 179.89352 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3964 1.2124 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2019 -0.0001 9 16 1.1293 -2.7280 -0.0005 10 6 2.5158 -3.8914 -0.0005 11 6 1.9874 -5.3026 -0.0012 12 8 0.7912 -5.5023 -0.0011 13 7 2.8441 -6.3431 -0.0018 14 6 2.3304 -7.7151 -0.0019 15 1 1.4097 -7.7606 -0.5834 16 6 2.0530 -8.1623 1.4335 17 6 3.0971 -7.5990 2.3862 18 6 4.4809 -8.1759 2.1731 19 8 5.0005 -7.8004 0.8934 20 6 4.6605 -8.6161 -0.1425 21 6 5.6188 -9.4447 -0.7111 22 6 5.2601 -10.3058 -1.7332 23 9 6.1881 -11.1147 -2.2897 24 6 3.9519 -10.3406 -2.1874 25 6 3.0011 -9.5075 -1.6253 26 6 3.3628 -8.6448 -0.6101 27 1 -0.4850 0.8400 -0.0004 28 1 3.1244 -3.7313 0.8894 29 1 3.1245 -3.7313 -0.8905 30 1 3.8010 -6.1835 -0.0015 31 1 1.0661 -7.8107 1.7343 32 1 2.0748 -9.2511 1.4805 33 1 2.7852 -7.8082 3.4094 34 1 3.1445 -6.5185 2.2502 35 1 4.4289 -9.2630 2.2336 36 1 5.1465 -7.8053 2.9527 37 1 6.6388 -9.4176 -0.3571 38 1 3.6738 -11.0187 -2.9806 39 1 1.9810 -9.5318 -1.9791 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000182822976.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:58:21 Heat of formation + Delta-G solvation = -115.239697 kcal Electronic energy + Delta-G solvation = -24931.002305 eV Core-core repulsion = 21071.632785 eV Total energy + Delta-G solvation = -3859.369520 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -49.98157 -42.07119 -40.28106 -38.41536 -36.83737 -34.58730 -33.99905 -32.43664 -31.58501 -30.39501 -28.16115 -27.63786 -25.81523 -24.21238 -22.45299 -22.30200 -20.94498 -19.88901 -19.38921 -18.27452 -17.92812 -17.31737 -17.19659 -16.88240 -16.76194 -16.57509 -16.35240 -16.09561 -15.72409 -15.46864 -14.93710 -14.73486 -14.66598 -14.50249 -14.39281 -14.01966 -13.54680 -13.40552 -13.16939 -13.15108 -12.91428 -12.60263 -12.44313 -12.23093 -11.84249 -11.70035 -11.66977 -11.15980 -11.14469 -10.96894 -10.28154 -10.15378 -9.98676 -9.60950 -8.66029 -8.34987 -6.12459 -0.10282 0.04094 1.27138 1.41194 1.46817 1.58462 1.60915 2.14899 2.26054 2.30480 2.71323 2.99193 3.22121 3.32822 3.44960 3.69050 3.83631 3.88739 3.92016 4.01137 4.04288 4.16838 4.27792 4.35812 4.44418 4.49754 4.54065 4.64144 4.83687 4.88766 4.93514 4.98854 5.07973 5.14452 5.21033 5.29515 5.42265 5.51911 5.60768 6.20087 6.32624 6.49201 7.06642 7.22682 8.74425 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020475 B = 0.002761 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.183668 B =10138.615368 C =10312.867395 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.258 1.258 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.547 4.547 8 H 0.080 0.920 9 S -0.142 6.142 10 C -0.131 4.131 11 C 0.539 3.461 12 O -0.559 6.559 13 N -0.703 5.703 14 C 0.189 3.811 15 H 0.088 0.912 16 C -0.128 4.128 17 C -0.153 4.153 18 C 0.069 3.931 19 O -0.337 6.337 20 C 0.131 3.869 21 C -0.172 4.172 22 C 0.108 3.892 23 F -0.141 7.141 24 C -0.154 4.154 25 C -0.058 4.058 26 C -0.140 4.140 27 H 0.271 0.729 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.412 0.588 31 H 0.060 0.940 32 H 0.092 0.908 33 H 0.093 0.907 34 H 0.056 0.944 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.154 0.846 38 H 0.162 0.838 39 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.873 -24.072 1.229 27.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.182 1.182 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.695 4.695 8 H 0.098 0.902 9 S 0.085 5.915 10 C -0.282 4.282 11 C 0.325 3.675 12 O -0.437 6.437 13 N -0.357 5.357 14 C 0.085 3.915 15 H 0.106 0.894 16 C -0.166 4.166 17 C -0.191 4.191 18 C -0.004 4.004 19 O -0.254 6.254 20 C 0.087 3.913 21 C -0.191 4.191 22 C 0.088 3.912 23 F -0.120 7.120 24 C -0.173 4.173 25 C -0.077 4.077 26 C -0.141 4.141 27 H 0.080 0.920 28 H 0.124 0.876 29 H 0.122 0.878 30 H 0.251 0.749 31 H 0.079 0.921 32 H 0.110 0.890 33 H 0.111 0.889 34 H 0.074 0.926 35 H 0.092 0.908 36 H 0.138 0.862 37 H 0.171 0.829 38 H 0.180 0.820 39 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.901 -24.192 1.225 26.563 hybrid contribution 1.885 1.201 -0.099 2.237 sum 12.785 -22.991 1.127 26.331 Atomic orbital electron populations 1.70179 1.07901 1.28555 1.48052 1.26108 0.95975 1.03243 0.93740 0.84914 0.78567 0.76390 0.78127 1.18186 1.19893 1.19832 1.23236 0.95307 0.92145 1.58796 0.90151 1.85482 1.10117 0.98911 1.97014 1.23369 1.03684 0.94738 1.06418 1.19955 0.86213 0.86393 0.74979 1.90678 1.16964 1.85940 1.50166 1.45956 1.10344 1.04434 1.74985 1.19967 0.95210 0.79212 0.97125 0.89353 1.21744 0.99562 1.01957 0.93355 1.21661 0.95080 1.01638 1.00741 1.22750 0.94789 1.00559 0.82351 1.86269 1.73408 1.49559 1.16119 1.18164 0.91121 0.91210 0.90829 1.21308 1.02133 0.96358 0.99269 1.17642 0.86966 0.91829 0.94735 1.91514 1.65264 1.71072 1.84103 1.21432 0.90886 1.02269 1.02692 1.21045 1.00890 0.92841 0.92874 1.20369 0.94173 0.99826 0.99720 0.91965 0.87572 0.87834 0.74932 0.92071 0.88970 0.88882 0.92561 0.90790 0.86190 0.82866 0.82017 0.82371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.93 13.22 21.65 0.29 -55.64 16 2 C 0.01 0.81 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.85 29.55 68.60 2.03 45.88 16 4 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 6 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 7 C -0.55 -31.49 9.50 67.95 0.65 -30.84 16 8 H 0.08 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.14 -7.93 20.57 -56.49 -1.16 -9.09 16 10 C -0.13 -5.33 6.16 71.23 0.44 -4.89 16 11 C 0.54 20.03 7.75 87.65 0.68 20.70 16 12 O -0.56 -25.26 15.52 -3.03 -0.05 -25.31 16 13 N -0.70 -19.03 3.28 -444.82 -1.46 -20.49 16 14 C 0.19 4.29 2.62 44.51 0.12 4.40 16 15 H 0.09 2.26 7.36 -2.39 -0.02 2.24 16 16 C -0.13 -2.51 5.53 30.27 0.17 -2.35 16 17 C -0.15 -2.69 5.35 29.80 0.16 -2.53 16 18 C 0.07 0.95 6.48 71.47 0.46 1.41 16 19 O -0.34 -6.06 8.36 -95.40 -0.80 -6.86 16 20 C 0.13 2.33 5.26 22.35 0.12 2.45 16 21 C -0.17 -2.79 9.98 22.45 0.22 -2.57 16 22 C 0.11 1.73 7.29 22.37 0.16 1.90 16 23 F -0.14 -2.47 17.26 44.97 0.78 -1.69 16 24 C -0.15 -2.09 10.03 22.36 0.22 -1.87 16 25 C -0.06 -0.86 9.69 22.25 0.22 -0.64 16 26 C -0.14 -2.53 4.80 -19.67 -0.09 -2.63 16 27 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 28 H 0.11 3.95 8.14 -2.40 -0.02 3.93 16 29 H 0.10 3.91 8.14 -2.39 -0.02 3.89 16 30 H 0.41 10.04 6.68 -92.70 -0.62 9.42 16 31 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.09 1.38 7.90 -2.39 -0.02 1.36 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.28 6.90 -2.38 -0.02 1.26 16 35 H 0.07 0.81 7.90 -2.39 -0.02 0.79 16 36 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.15 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.16 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.16 1.78 7.98 -2.91 -0.02 1.76 16 Total: -1.00 -74.14 342.67 4.08 -70.06 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: 0.47 Total: 19.32 kcal Atomic # 6 Polarization: -20.16 SS G_CDS: 3.99 Total: -16.17 kcal Atomic # 7 Polarization: -74.96 SS G_CDS: -1.17 Total: -76.13 kcal Atomic # 8 Polarization: -31.33 SS G_CDS: -0.84 Total: -32.17 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.78 Total: -1.69 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -7.93 SS G_CDS: -1.16 Total: -9.09 kcal Total: -74.14 4.08 -70.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182822976.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.183 kcal (2) G-P(sol) polarization free energy of solvation -74.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.057 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds