Wall clock time and date at job start Tue Mar 31 2020 14:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30631 * 1 3 3 Si 1.86802 * 119.99685 * 2 1 4 4 H 1.48501 * 109.47319 * 275.00246 * 3 2 1 5 5 H 1.48502 * 109.46959 * 35.00542 * 3 2 1 6 6 H 1.48497 * 109.47223 * 155.00010 * 3 2 1 7 7 C 1.40129 * 120.00254 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99913 * 174.97677 * 7 2 1 9 9 C 1.41796 * 120.00194 * 354.97408 * 7 2 1 10 10 O 1.21770 * 120.00042 * 4.74277 * 9 7 2 11 11 N 1.34778 * 120.00188 * 185.02532 * 9 7 2 12 12 C 1.39557 * 119.99922 * 174.19381 * 11 9 7 13 13 C 1.38926 * 120.10829 * 335.15125 * 12 11 9 14 14 C 1.38184 * 119.96051 * 179.76933 * 13 12 11 15 15 Cl 1.73602 * 119.91526 * 180.23158 * 14 13 12 16 16 C 1.38515 * 120.16615 * 0.50678 * 14 13 12 17 17 C 1.38234 * 120.21138 * 359.74576 * 16 14 13 18 18 C 1.38538 * 120.04107 * 359.97438 * 17 16 14 19 19 O 1.35939 * 120.08635 * 179.97438 * 18 17 16 20 20 C 1.42904 * 116.99726 * 0.02810 * 19 18 17 21 21 C 1.53001 * 109.46929 * 179.97438 * 20 19 18 22 22 H 1.09000 * 110.43674 * 303.90549 * 21 20 19 23 23 C 1.54811 * 110.48646 * 181.21892 * 21 20 19 24 24 C 1.55004 * 102.09057 * 220.43996 * 23 21 20 25 25 O 1.44376 * 103.48876 * 37.02239 * 24 23 21 26 26 C 1.43740 * 106.97872 * 319.94195 * 25 24 23 27 27 H 0.97001 * 120.00429 * 359.97438 * 1 2 3 28 28 H 0.97002 * 119.99616 * 354.18759 * 11 9 7 29 29 H 1.08000 * 120.01579 * 0.02722 * 13 12 11 30 30 H 1.08003 * 119.88931 * 179.72484 * 16 14 13 31 31 H 1.08002 * 119.97686 * 179.97438 * 17 16 14 32 32 H 1.09004 * 109.46946 * 299.99037 * 20 19 18 33 33 H 1.09001 * 109.47324 * 59.99521 * 20 19 18 34 34 H 1.08999 * 110.91096 * 338.63904 * 23 21 20 35 35 H 1.08998 * 110.90990 * 102.24740 * 23 21 20 36 36 H 1.08997 * 110.61674 * 278.52220 * 24 23 21 37 37 H 1.09001 * 110.61487 * 155.52232 * 24 23 21 38 38 H 1.09007 * 109.87516 * 267.08787 * 26 25 24 39 39 H 1.08996 * 110.00978 * 146.00792 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2402 1.6178 0.0000 4 1 2.3820 2.1076 -1.3947 5 1 1.4945 2.6198 0.8032 6 1 3.5866 1.4121 0.5917 7 6 2.0070 -1.2135 -0.0005 8 1 3.0840 -1.2152 -0.0824 9 6 1.3022 -2.4393 0.1065 10 8 0.0845 -2.4430 0.1119 11 7 1.9800 -3.5998 0.2080 12 6 1.2917 -4.7924 0.4349 13 6 0.0481 -4.7723 1.0540 14 6 -0.6329 -5.9546 1.2728 15 17 -2.1895 -5.9276 2.0411 16 6 -0.0743 -7.1616 0.8859 17 6 1.1649 -7.1901 0.2740 18 6 1.8528 -6.0095 0.0452 19 8 3.0717 -6.0366 -0.5560 20 6 3.5840 -7.3181 -0.9265 21 6 4.9547 -7.1486 -1.5847 22 1 4.8868 -6.4719 -2.4365 23 6 5.5186 -8.5219 -2.0237 24 6 7.0167 -8.3932 -1.6468 25 8 6.9905 -7.6419 -0.4142 26 6 5.9832 -6.6272 -0.5624 27 1 -0.4851 0.8400 0.0004 28 1 2.9463 -3.6060 0.1233 29 1 -0.3878 -3.8329 1.3602 30 1 -0.6086 -8.0833 1.0631 31 1 1.5971 -8.1334 -0.0258 32 1 3.6821 -7.9411 -0.0375 33 1 2.9000 -7.7934 -1.6297 34 1 5.0460 -9.3320 -1.4683 35 1 5.3988 -8.6664 -3.0973 36 1 7.5608 -7.8474 -2.4175 37 1 7.4581 -9.3770 -1.4874 38 1 6.4362 -5.7061 -0.9291 39 1 5.4945 -6.4443 0.3946 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186864691.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:19 Heat of formation + Delta-G solvation = -103.491816 kcal Electronic energy + Delta-G solvation = -24884.184114 eV Core-core repulsion = 21010.907525 eV Total energy + Delta-G solvation = -3873.276590 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.29349 -39.48085 -37.93406 -36.93189 -35.67570 -33.59672 -33.14891 -32.43140 -29.98699 -29.69347 -28.64668 -26.49712 -26.08143 -23.07318 -22.53880 -21.69800 -20.74372 -19.88312 -18.04073 -17.51496 -17.03907 -16.43535 -16.27322 -15.79045 -15.44847 -15.28143 -15.00525 -14.62510 -14.17455 -13.80061 -13.64892 -13.32336 -13.05023 -12.69830 -12.51810 -12.29137 -12.11222 -11.94538 -11.79138 -11.51907 -11.41584 -11.23053 -11.19309 -11.04172 -10.88352 -10.66706 -10.45019 -10.36410 -10.31373 -9.85415 -9.50806 -8.94259 -8.09554 -7.68026 -6.94232 -6.41375 -4.93543 1.68048 1.78898 2.63030 3.03372 3.11609 3.15508 3.20694 3.70646 3.94567 4.03047 4.22513 4.42496 4.50782 4.56364 4.57412 4.86815 4.92993 5.01433 5.12802 5.19825 5.30643 5.40478 5.43447 5.52754 5.56640 5.61258 5.70305 5.76198 5.85979 5.97034 6.21918 6.41658 6.51038 6.63789 6.76989 7.14026 7.22662 7.49691 7.81007 7.99508 8.12526 8.76759 9.22342 10.33090 10.52345 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.004297 C = 0.002906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.896649 B = 6514.695663 C = 9632.239915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.088 3.912 3 Si 0.913 3.087 4 H -0.271 1.271 5 H -0.276 1.276 6 H -0.262 1.262 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.541 3.459 10 O -0.564 6.564 11 N -0.685 5.685 12 C 0.190 3.810 13 C -0.106 4.106 14 C -0.038 4.038 15 Cl -0.084 7.084 16 C -0.129 4.129 17 C -0.174 4.174 18 C 0.065 3.935 19 O -0.312 6.312 20 C 0.072 3.928 21 C -0.122 4.122 22 H 0.096 0.904 23 C -0.147 4.147 24 C 0.047 3.953 25 O -0.380 6.380 26 C 0.052 3.948 27 H 0.274 0.726 28 H 0.398 0.602 29 H 0.171 0.829 30 H 0.124 0.876 31 H 0.127 0.873 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.080 0.920 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.702 -15.520 -2.290 17.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.135 4.135 3 Si 0.736 3.264 4 H -0.196 1.196 5 H -0.201 1.201 6 H -0.186 1.186 7 C -0.570 4.570 8 H 0.089 0.911 9 C 0.351 3.649 10 O -0.448 6.448 11 N -0.327 5.327 12 C 0.088 3.912 13 C -0.128 4.128 14 C -0.065 4.065 15 Cl -0.056 7.056 16 C -0.149 4.149 17 C -0.194 4.194 18 C 0.017 3.983 19 O -0.226 6.226 20 C -0.004 4.004 21 C -0.140 4.140 22 H 0.115 0.885 23 C -0.185 4.185 24 C -0.030 4.030 25 O -0.299 6.299 26 C -0.025 4.025 27 H 0.084 0.916 28 H 0.232 0.768 29 H 0.188 0.812 30 H 0.142 0.858 31 H 0.145 0.855 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 7.818 -15.129 -2.090 17.157 hybrid contribution 0.520 0.529 -0.311 0.804 sum 8.338 -14.600 -2.401 16.984 Atomic orbital electron populations 1.70004 1.07285 1.28002 1.31907 1.25755 0.94647 1.00696 0.92401 0.86266 0.80359 0.80810 0.78915 1.19582 1.20125 1.18578 1.20045 0.94714 0.89963 1.52260 0.91060 1.17102 0.87544 0.82003 0.78256 1.90607 1.13512 1.85408 1.55299 1.44079 1.10055 1.05106 1.73466 1.17209 0.93082 0.84835 0.96042 1.21453 0.93965 0.98999 0.98334 1.20625 0.88365 0.94719 1.02813 1.98321 1.27985 1.98951 1.80307 1.20504 0.95799 0.96319 1.02327 1.20723 0.96563 0.96388 1.05692 1.18756 0.86750 0.93396 0.99352 1.85983 1.31443 1.30640 1.74582 1.22712 0.93983 0.84729 0.98953 1.22571 0.93884 0.98056 0.99518 0.88543 1.23142 0.96308 0.96624 1.02442 1.23539 0.95562 0.96756 0.87155 1.88886 1.58028 1.47351 1.35649 1.23251 0.88010 0.91123 1.00088 0.91553 0.76840 0.81231 0.85782 0.85472 0.91875 0.91918 0.90088 0.89661 0.92023 0.88900 0.91724 0.89032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -21.12 11.75 55.55 0.65 -20.46 16 2 C 0.09 2.33 5.49 -17.35 -0.10 2.24 16 3 Si 0.91 19.11 29.56 -169.99 -5.03 14.08 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 7 C -0.53 -14.35 9.31 -37.51 -0.35 -14.70 16 8 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 9 C 0.54 14.78 7.37 -14.90 -0.11 14.67 16 10 O -0.56 -17.18 12.05 5.13 0.06 -17.12 16 11 N -0.69 -15.52 5.26 -12.31 -0.06 -15.59 16 12 C 0.19 4.00 6.45 -83.59 -0.54 3.46 16 13 C -0.11 -2.29 8.49 -39.35 -0.33 -2.62 16 14 C -0.04 -0.70 6.32 -39.50 -0.25 -0.95 16 15 Cl -0.08 -1.43 28.95 -51.86 -1.50 -2.93 16 16 C -0.13 -2.01 9.82 -39.48 -0.39 -2.40 16 17 C -0.17 -2.60 9.03 -39.47 -0.36 -2.95 16 18 C 0.07 1.13 6.71 -38.97 -0.26 0.87 16 19 O -0.31 -4.76 9.29 -19.55 -0.18 -4.94 16 20 C 0.07 0.79 3.84 37.16 0.14 0.93 16 21 C -0.12 -1.16 3.34 -89.09 -0.30 -1.46 16 22 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 23 C -0.15 -1.06 6.71 -24.72 -0.17 -1.23 16 24 C 0.05 0.37 7.72 38.22 0.29 0.66 16 25 O -0.38 -4.35 11.52 -35.23 -0.41 -4.75 16 26 C 0.05 0.56 7.23 37.73 0.27 0.84 16 27 H 0.27 7.00 8.29 -40.82 -0.34 6.66 16 28 H 0.40 8.02 8.30 -40.82 -0.34 7.68 16 29 H 0.17 4.28 5.78 -52.49 -0.30 3.97 16 30 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 31 H 0.13 1.47 6.30 -52.49 -0.33 1.14 16 32 H 0.06 0.64 7.66 -51.93 -0.40 0.25 16 33 H 0.06 0.63 7.66 -51.93 -0.40 0.23 16 34 H 0.08 0.54 7.87 -51.93 -0.41 0.13 16 35 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.06 0.68 8.14 -51.92 -0.42 0.26 16 39 H 0.09 1.07 7.60 -51.93 -0.39 0.68 16 LS Contribution 343.61 15.07 5.18 5.18 Total: -1.00 -31.91 343.61 -8.38 -40.28 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -4.65 Total: 8.90 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -2.44 Total: -2.65 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.59 Total: -36.05 kcal Atomic # 8 Polarization: -26.29 SS G_CDS: -0.53 Total: -26.81 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -1.50 Total: -2.93 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.91 -8.38 -40.28 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186864691.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.207 kcal (2) G-P(sol) polarization free energy of solvation -31.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds