Wall clock time and date at job start Tue Mar 31 2020 13:51:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34704 * 117.00083 * 2 1 4 4 O 1.21469 * 120.00403 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00169 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14430 * 357.68617 * 5 3 2 7 7 C 1.37925 * 119.84350 * 180.02562 * 6 5 3 8 8 C 1.38391 * 120.15262 * 359.97438 * 7 6 5 9 9 C 1.38339 * 120.29982 * 359.72473 * 8 7 6 10 10 C 1.37964 * 120.15292 * 0.55302 * 9 8 7 11 11 S 1.76204 * 120.07906 * 179.72466 * 10 9 8 12 12 O 1.42094 * 106.40056 * 250.18503 * 11 10 9 13 13 O 1.42101 * 106.40131 * 117.26407 * 11 10 9 14 14 N 1.65605 * 107.21468 * 3.72531 * 11 10 9 15 15 C 1.36936 * 119.99773 * 98.10758 * 14 11 10 16 16 H 1.08006 * 119.99566 * 142.56558 * 15 14 11 17 17 C 1.38806 * 120.00034 * 322.56041 * 15 14 11 18 18 N 1.31619 * 120.00395 * 354.99921 * 17 15 14 19 19 Si 1.86801 * 119.99693 * 174.99879 * 17 15 14 20 20 H 1.48498 * 109.47168 * 269.99845 * 19 17 15 21 21 H 1.48494 * 109.47386 * 30.00297 * 19 17 15 22 22 H 1.48503 * 109.46961 * 150.00031 * 19 17 15 23 23 C 1.46494 * 119.99755 * 278.10239 * 14 11 10 24 24 C 1.52997 * 117.49667 * 185.07992 * 23 14 11 25 25 C 1.53001 * 117.49957 * 116.42226 * 23 14 11 26 26 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46843 * 299.99239 * 1 2 3 28 28 H 1.09004 * 109.47327 * 59.99040 * 1 2 3 29 29 H 1.08000 * 120.08284 * 0.03836 * 6 5 3 30 30 H 1.08011 * 119.92326 * 179.97438 * 7 6 5 31 31 H 1.08003 * 119.84655 * 179.97438 * 8 7 6 32 32 H 1.08007 * 119.92647 * 180.28161 * 9 8 7 33 33 H 0.96992 * 120.00191 * 175.01900 * 18 17 15 34 34 H 1.09002 * 115.55473 * 330.74935 * 23 14 11 35 35 H 1.09000 * 117.50232 * 0.02562 * 24 23 14 36 36 H 1.09005 * 117.49928 * 145.02608 * 24 23 14 37 37 H 1.08997 * 117.49755 * 214.98183 * 25 23 14 38 38 H 1.09002 * 117.49450 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3023 0.1093 0.0499 7 6 5.6793 0.1887 0.0506 8 6 6.3044 1.4224 0.0022 9 6 5.5541 2.5834 -0.0531 10 6 4.1760 2.5187 -0.0487 11 16 3.2223 3.9990 -0.1118 12 8 2.6180 4.1418 1.1663 13 8 2.4786 3.9459 -1.3215 14 7 4.2842 5.2598 -0.2706 15 6 4.5297 5.7967 -1.5061 16 1 4.6732 6.8618 -1.6132 17 6 4.5942 4.9721 -2.6208 18 7 4.5178 3.6658 -2.4785 19 14 4.7894 5.7163 -4.3230 20 1 3.4488 5.9807 -4.9044 21 1 5.5455 6.9904 -4.2225 22 1 5.5293 4.7692 -5.1954 23 6 4.9607 5.8008 0.9108 24 6 5.8373 7.0397 0.7175 25 6 6.4844 5.6760 0.9714 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 3.8158 -0.8542 0.0871 30 1 6.2710 -0.7140 0.0892 31 1 7.3830 1.4789 0.0034 32 1 6.0483 3.5428 -0.0953 33 1 4.4900 3.0935 -3.2611 34 1 4.4110 5.7145 1.8482 35 1 5.9103 7.4526 -0.2887 36 1 5.8647 7.7684 1.5277 37 1 6.9371 5.5079 1.9486 38 1 6.9834 5.1910 0.1324 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000269698768.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:54 Heat of formation + Delta-G solvation = -71.143959 kcal Electronic energy + Delta-G solvation = -27387.128478 eV Core-core repulsion = 23517.298303 eV Total energy + Delta-G solvation = -3869.830175 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.25795 -38.24819 -37.24517 -36.21277 -35.61139 -34.01393 -33.14612 -31.18799 -30.66656 -30.37570 -27.53341 -24.90238 -23.76784 -22.53124 -21.75198 -20.87355 -20.41619 -18.76914 -18.07862 -17.13598 -16.46949 -16.12587 -16.05439 -15.98529 -14.99561 -14.56776 -14.51865 -14.11093 -13.85702 -13.77983 -13.50059 -13.09478 -13.04547 -12.29987 -12.11641 -12.06680 -11.77888 -11.66106 -11.33283 -11.12078 -11.03371 -10.68631 -10.64673 -10.59283 -10.36491 -10.33093 -10.22350 -10.04897 -9.91372 -9.48031 -9.41396 -8.81089 -8.70311 -8.51739 -7.60816 -6.31752 -3.98751 1.01166 1.71162 2.01445 2.88215 2.95475 3.27515 3.33589 3.35988 4.13817 4.21571 4.54434 4.63987 4.91609 5.04797 5.19827 5.23253 5.27491 5.36925 5.48357 5.57275 5.66849 5.69137 5.72600 5.84202 5.91680 6.09901 6.18999 6.26166 6.35143 6.48317 6.52220 6.58772 6.68304 6.78498 6.79114 6.92119 7.28286 7.45801 7.61933 7.98371 8.42563 9.03419 9.46033 10.78242 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.006673 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.552595 B = 4194.813504 C = 4461.696398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.353 6.353 3 C 0.497 3.503 4 O -0.483 6.483 5 C -0.057 4.057 6 C -0.090 4.090 7 C -0.111 4.111 8 C -0.112 4.112 9 C -0.008 4.008 10 C -0.528 4.528 11 S 2.719 3.281 12 O -1.008 7.008 13 O -0.923 6.923 14 N -0.842 5.842 15 C -0.306 4.306 16 H 0.090 0.910 17 C 0.039 3.961 18 N -0.885 5.885 19 Si 0.935 3.065 20 H -0.277 1.277 21 H -0.274 1.274 22 H -0.286 1.286 23 C 0.080 3.920 24 C -0.173 4.173 25 C -0.211 4.211 26 H 0.100 0.900 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.133 0.867 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.148 0.852 33 H 0.281 0.719 34 H 0.119 0.881 35 H 0.106 0.894 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.944 -6.612 5.127 8.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.270 6.270 3 C 0.341 3.659 4 O -0.370 6.370 5 C -0.060 4.060 6 C -0.109 4.109 7 C -0.129 4.129 8 C -0.131 4.131 9 C -0.026 4.026 10 C -0.610 4.610 11 S 2.808 3.192 12 O -0.998 6.998 13 O -0.912 6.912 14 N -0.671 5.671 15 C -0.437 4.437 16 H 0.108 0.892 17 C -0.166 4.166 18 N -0.526 5.526 19 Si 0.763 3.237 20 H -0.203 1.203 21 H -0.199 1.199 22 H -0.211 1.211 23 C -0.029 4.029 24 C -0.212 4.212 25 C -0.251 4.251 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.151 0.849 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.166 0.834 33 H 0.092 0.908 34 H 0.137 0.863 35 H 0.124 0.876 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 1.817 -6.513 5.056 8.443 hybrid contribution 0.640 -0.323 -1.121 1.331 sum 2.457 -6.836 3.935 8.261 Atomic orbital electron populations 1.23307 0.76137 1.03384 1.03150 1.86478 1.23503 1.32201 1.84793 1.21483 0.89408 0.81801 0.73202 1.90869 1.66469 1.35238 1.44455 1.18422 0.87977 0.94202 1.05379 1.21262 0.94118 0.97152 0.98363 1.21099 0.94164 0.97774 0.99881 1.21445 0.99941 0.92876 0.98874 1.20951 0.91440 0.99693 0.90556 1.31461 1.08131 1.18249 1.03168 1.01800 0.72163 0.72659 0.72622 1.93420 1.74146 1.86598 1.45670 1.93449 1.67431 1.84821 1.45483 1.52806 1.56442 1.48142 1.09741 1.18914 1.49888 0.93170 0.81718 0.89232 1.25331 0.95661 0.95006 1.00621 1.69266 1.48439 1.02718 1.32204 0.85777 0.78266 0.78091 0.81570 1.20298 1.19875 1.21143 1.21593 0.89183 1.01303 0.90863 1.23052 1.04414 0.90678 1.03024 1.23381 0.98188 1.01611 1.01898 0.88132 0.91638 0.91488 0.84949 0.85740 0.85791 0.83437 0.90801 0.86345 0.87594 0.89777 0.89723 0.88361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.56 101.05 1.07 1.53 16 2 O -0.35 -6.19 9.82 -40.50 -0.40 -6.59 16 3 C 0.50 10.97 7.86 34.61 0.27 11.24 16 4 O -0.48 -12.34 11.57 -29.88 -0.35 -12.69 16 5 C -0.06 -1.24 5.87 -104.98 -0.62 -1.85 16 6 C -0.09 -1.54 9.62 -39.17 -0.38 -1.92 16 7 C -0.11 -1.69 10.03 -39.64 -0.40 -2.09 16 8 C -0.11 -1.87 10.04 -39.49 -0.40 -2.27 16 9 C -0.01 -0.16 8.34 -39.64 -0.33 -0.49 16 10 C -0.53 -12.36 4.49 -39.17 -0.18 -12.54 16 11 S 2.72 72.65 3.16 -107.50 -0.34 72.31 16 12 O -1.01 -27.96 15.92 -65.88 -1.05 -29.01 16 13 O -0.92 -27.72 12.93 -66.55 -0.86 -28.58 16 14 N -0.84 -20.69 2.21 -53.43 -0.12 -20.81 16 15 C -0.31 -7.78 8.40 -15.06 -0.13 -7.90 16 16 H 0.09 2.18 6.51 -52.48 -0.34 1.84 16 17 C 0.04 1.00 4.63 -17.43 -0.08 0.92 16 18 N -0.88 -23.53 7.70 55.49 0.43 -23.10 16 19 Si 0.94 21.02 29.56 -169.99 -5.02 16.00 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.27 -5.84 7.11 56.52 0.40 -5.43 16 22 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 23 C 0.08 1.63 6.15 -67.93 -0.42 1.22 16 24 C -0.17 -3.00 9.81 -26.70 -0.26 -3.26 16 25 C -0.21 -3.59 9.17 -26.69 -0.24 -3.84 16 26 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 27 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.13 1.87 7.61 -52.49 -0.40 1.47 16 30 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 31 H 0.12 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.15 3.02 4.33 -52.48 -0.23 2.79 16 33 H 0.28 7.39 8.32 -40.82 -0.34 7.05 16 34 H 0.12 2.35 7.53 -51.93 -0.39 1.95 16 35 H 0.11 1.95 6.39 -51.93 -0.33 1.62 16 36 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.10 1.76 6.96 -51.93 -0.36 1.40 16 LS Contribution 323.64 15.07 4.88 4.88 Total: -1.00 -33.85 323.64 -9.06 -42.92 By element: Atomic # 1 Polarization: 10.08 SS G_CDS: -4.15 Total: 5.93 kcal Atomic # 6 Polarization: -19.17 SS G_CDS: -2.09 Total: -21.25 kcal Atomic # 7 Polarization: -44.22 SS G_CDS: 0.31 Total: -43.91 kcal Atomic # 8 Polarization: -74.22 SS G_CDS: -2.65 Total: -76.87 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 16 Polarization: 72.65 SS G_CDS: -0.34 Total: 72.31 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -33.85 -9.06 -42.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269698768.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.227 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds