Wall clock time and date at job start Tue Mar 31 2020 13:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34704 * 117.00083 * 2 1 4 4 O 1.21469 * 120.00403 * 0.02562 * 3 2 1 5 5 C 1.47729 * 120.00169 * 179.97438 * 3 2 1 6 6 C 1.39648 * 120.14430 * 357.68617 * 5 3 2 7 7 C 1.37925 * 119.84350 * 180.02562 * 6 5 3 8 8 C 1.38391 * 120.15262 * 359.97438 * 7 6 5 9 9 C 1.38339 * 120.29982 * 359.72473 * 8 7 6 10 10 C 1.37964 * 120.15292 * 0.55302 * 9 8 7 11 11 S 1.76204 * 120.07906 * 179.72466 * 10 9 8 12 12 O 1.42094 * 106.40056 * 250.18503 * 11 10 9 13 13 O 1.42101 * 106.40131 * 117.26407 * 11 10 9 14 14 N 1.65605 * 107.21468 * 3.72531 * 11 10 9 15 15 C 1.36936 * 119.99773 * 98.10758 * 14 11 10 16 16 H 1.08006 * 119.99566 * 142.56558 * 15 14 11 17 17 C 1.38806 * 120.00034 * 322.56041 * 15 14 11 18 18 N 1.31619 * 120.00395 * 354.99921 * 17 15 14 19 19 Si 1.86801 * 119.99693 * 174.99879 * 17 15 14 20 20 H 1.48498 * 109.47168 * 269.99845 * 19 17 15 21 21 H 1.48494 * 109.47386 * 30.00297 * 19 17 15 22 22 H 1.48503 * 109.46961 * 150.00031 * 19 17 15 23 23 C 1.46494 * 119.99755 * 278.10239 * 14 11 10 24 24 C 1.52997 * 117.49667 * 185.07992 * 23 14 11 25 25 C 1.53001 * 117.49957 * 116.42226 * 23 14 11 26 26 H 1.09000 * 109.47189 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46843 * 299.99239 * 1 2 3 28 28 H 1.09004 * 109.47327 * 59.99040 * 1 2 3 29 29 H 1.08000 * 120.08284 * 0.03836 * 6 5 3 30 30 H 1.08011 * 119.92326 * 179.97438 * 7 6 5 31 31 H 1.08003 * 119.84655 * 179.97438 * 8 7 6 32 32 H 1.08007 * 119.92647 * 180.28161 * 9 8 7 33 33 H 0.96992 * 120.00191 * 175.01900 * 18 17 15 34 34 H 1.09002 * 115.55473 * 330.74935 * 23 14 11 35 35 H 1.09000 * 117.50232 * 0.02562 * 24 23 14 36 36 H 1.09005 * 117.49928 * 145.02608 * 24 23 14 37 37 H 1.08997 * 117.49755 * 214.98183 * 25 23 14 38 38 H 1.09002 * 117.49450 * 359.97438 * 25 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2002 0.0000 4 8 1.4021 2.2190 0.0005 5 6 3.5388 1.2776 0.0006 6 6 4.3023 0.1093 0.0499 7 6 5.6793 0.1887 0.0506 8 6 6.3044 1.4224 0.0022 9 6 5.5541 2.5834 -0.0531 10 6 4.1760 2.5187 -0.0487 11 16 3.2223 3.9990 -0.1118 12 8 2.6180 4.1418 1.1663 13 8 2.4786 3.9459 -1.3215 14 7 4.2842 5.2598 -0.2706 15 6 4.5297 5.7967 -1.5061 16 1 4.6732 6.8618 -1.6132 17 6 4.5942 4.9721 -2.6208 18 7 4.5178 3.6658 -2.4785 19 14 4.7894 5.7163 -4.3230 20 1 3.4488 5.9807 -4.9044 21 1 5.5455 6.9904 -4.2225 22 1 5.5293 4.7692 -5.1954 23 6 4.9607 5.8008 0.9108 24 6 5.8373 7.0397 0.7175 25 6 6.4844 5.6760 0.9714 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5140 -0.8899 29 1 3.8158 -0.8542 0.0871 30 1 6.2710 -0.7140 0.0892 31 1 7.3830 1.4789 0.0034 32 1 6.0483 3.5428 -0.0953 33 1 4.4900 3.0935 -3.2611 34 1 4.4110 5.7145 1.8482 35 1 5.9103 7.4526 -0.2887 36 1 5.8647 7.7684 1.5277 37 1 6.9371 5.5079 1.9486 38 1 6.9834 5.1910 0.1324 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000269698768.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:51:53 Heat of formation + Delta-G solvation = -93.388625 kcal Electronic energy + Delta-G solvation = -27388.093079 eV Core-core repulsion = 23517.298303 eV Total energy + Delta-G solvation = -3870.794776 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.81572 -39.66975 -38.83357 -37.78113 -37.62229 -36.03548 -34.95852 -32.64396 -32.23737 -32.06256 -28.75848 -26.78265 -25.22335 -23.96901 -23.16418 -22.42724 -22.00568 -20.62328 -19.65804 -18.74681 -18.15645 -17.80316 -17.66367 -17.57251 -16.82354 -16.03311 -15.93107 -15.86741 -15.47818 -15.32339 -15.14490 -14.61322 -14.47798 -14.04103 -13.66207 -13.47766 -13.34142 -13.07986 -12.96881 -12.92963 -12.64243 -12.47189 -12.35889 -12.26086 -12.11471 -11.96544 -11.89660 -11.79648 -11.59948 -11.20931 -10.99254 -10.65139 -10.16237 -9.96270 -9.40249 -8.23115 -5.94530 -0.50526 0.13738 0.31223 1.36531 1.46046 1.49971 1.52098 1.58607 2.38428 2.71619 2.78904 3.07918 3.18787 3.43480 3.57352 3.95611 4.10575 4.14021 4.22944 4.24330 4.27497 4.37783 4.44152 4.49035 4.55111 4.59709 4.68635 4.85231 4.93176 4.98915 5.07092 5.13719 5.24359 5.34149 5.42211 5.52756 5.65040 5.76456 5.94911 6.38707 6.46640 7.14894 7.52138 8.81593 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013201 B = 0.006673 C = 0.006274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.552595 B = 4194.813504 C = 4461.696398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.341 6.341 3 C 0.489 3.511 4 O -0.533 6.533 5 C -0.095 4.095 6 C -0.079 4.079 7 C -0.091 4.091 8 C -0.103 4.103 9 C -0.025 4.025 10 C -0.552 4.552 11 S 2.702 3.298 12 O -1.047 7.047 13 O -0.980 6.980 14 N -0.850 5.850 15 C -0.308 4.308 16 H 0.095 0.905 17 C -0.007 4.007 18 N -0.890 5.890 19 Si 0.984 3.016 20 H -0.296 1.296 21 H -0.251 1.251 22 H -0.279 1.279 23 C 0.038 3.962 24 C -0.158 4.158 25 C -0.182 4.182 26 H 0.154 0.846 27 H 0.063 0.937 28 H 0.055 0.945 29 H 0.166 0.834 30 H 0.182 0.818 31 H 0.167 0.833 32 H 0.141 0.859 33 H 0.272 0.728 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.117 0.883 37 H 0.120 0.880 38 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.189 -8.590 5.476 11.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.256 6.256 3 C 0.335 3.665 4 O -0.425 6.425 5 C -0.098 4.098 6 C -0.098 4.098 7 C -0.109 4.109 8 C -0.121 4.121 9 C -0.044 4.044 10 C -0.640 4.640 11 S 2.799 3.201 12 O -1.037 7.037 13 O -0.969 6.969 14 N -0.680 5.680 15 C -0.441 4.441 16 H 0.113 0.887 17 C -0.210 4.210 18 N -0.532 5.532 19 Si 0.810 3.190 20 H -0.223 1.223 21 H -0.175 1.175 22 H -0.204 1.204 23 C -0.070 4.070 24 C -0.197 4.197 25 C -0.222 4.222 26 H 0.172 0.828 27 H 0.081 0.919 28 H 0.074 0.926 29 H 0.184 0.816 30 H 0.199 0.801 31 H 0.185 0.815 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.131 0.869 35 H 0.113 0.887 36 H 0.135 0.865 37 H 0.138 0.862 38 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.036 -8.466 5.454 11.260 hybrid contribution -0.365 0.178 -1.176 1.244 sum 4.671 -8.289 4.278 10.432 Atomic orbital electron populations 1.23741 0.74012 1.06618 1.02573 1.86463 1.25523 1.29772 1.83868 1.21929 0.90170 0.82219 0.72135 1.90842 1.67547 1.37019 1.47061 1.18737 0.88067 0.95352 1.07664 1.21730 0.95112 0.96738 0.96214 1.21756 0.93533 0.99318 0.96290 1.21959 1.01901 0.91906 0.96364 1.21076 0.90525 1.01285 0.91489 1.30743 1.09106 1.16883 1.07246 1.01960 0.72758 0.74144 0.71205 1.93330 1.76065 1.87513 1.46746 1.93352 1.70282 1.86122 1.47190 1.52532 1.56148 1.48798 1.10508 1.19167 1.48743 0.93515 0.82651 0.88707 1.26107 0.95878 0.95519 1.03540 1.69435 1.48291 1.03360 1.32081 0.85035 0.77374 0.78601 0.77988 1.22319 1.17481 1.20416 1.21764 0.91226 1.04723 0.89335 1.23162 1.01976 0.90880 1.03637 1.23415 0.94793 1.00569 1.03417 0.82799 0.91863 0.92635 0.81644 0.80072 0.81522 0.84133 0.91728 0.86856 0.88727 0.86483 0.86196 0.89094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.63 10.56 113.37 1.20 1.83 16 2 O -0.34 -11.91 9.82 -56.14 -0.55 -12.46 16 3 C 0.49 22.47 7.86 70.33 0.55 23.02 16 4 O -0.53 -29.32 11.57 30.11 0.35 -28.97 16 5 C -0.10 -4.17 5.87 -20.10 -0.12 -4.28 16 6 C -0.08 -2.48 9.62 22.54 0.22 -2.27 16 7 C -0.09 -2.32 10.03 22.23 0.22 -2.09 16 8 C -0.10 -3.01 10.04 22.33 0.22 -2.78 16 9 C -0.02 -1.01 8.34 22.23 0.19 -0.82 16 10 C -0.55 -26.50 4.49 22.53 0.10 -26.40 16 11 S 2.70 153.35 3.16 -56.49 -0.18 153.17 16 12 O -1.05 -62.62 15.92 -119.68 -1.90 -64.53 16 13 O -0.98 -63.28 12.93 -119.03 -1.54 -64.82 16 14 N -0.85 -43.38 2.21 -322.95 -0.71 -44.09 16 15 C -0.31 -16.09 8.40 84.03 0.71 -15.38 16 16 H 0.10 4.70 6.51 -2.91 -0.02 4.68 16 17 C -0.01 -0.40 4.63 84.86 0.39 0.00 16 18 N -0.89 -48.65 7.70 21.65 0.17 -48.49 16 19 Si 0.98 43.47 29.56 68.60 2.03 45.49 16 20 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.25 -10.06 7.11 99.48 0.71 -9.35 16 22 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 23 C 0.04 1.56 6.15 44.99 0.28 1.83 16 24 C -0.16 -5.24 9.81 30.62 0.30 -4.94 16 25 C -0.18 -5.89 9.17 30.62 0.28 -5.60 16 26 H 0.15 2.45 8.14 -2.39 -0.02 2.43 16 27 H 0.06 1.73 8.14 -2.38 -0.02 1.71 16 28 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.17 3.97 7.61 -2.91 -0.02 3.95 16 30 H 0.18 2.63 8.06 -2.90 -0.02 2.61 16 31 H 0.17 3.43 8.06 -2.91 -0.02 3.40 16 32 H 0.14 5.72 4.33 -2.91 -0.01 5.71 16 33 H 0.27 14.77 8.32 -92.71 -0.77 14.00 16 34 H 0.11 4.69 7.53 -2.39 -0.02 4.67 16 35 H 0.09 3.38 6.39 -2.39 -0.02 3.36 16 36 H 0.12 3.08 8.14 -2.38 -0.02 3.06 16 37 H 0.12 3.01 8.14 -2.39 -0.02 2.99 16 38 H 0.09 3.11 6.96 -2.39 -0.02 3.09 16 Total: -1.00 -82.31 323.64 3.30 -79.01 By element: Atomic # 1 Polarization: 22.47 SS G_CDS: 1.10 Total: 23.57 kcal Atomic # 6 Polarization: -42.44 SS G_CDS: 4.54 Total: -37.90 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -0.55 Total: -92.57 kcal Atomic # 8 Polarization: -167.13 SS G_CDS: -3.65 Total: -170.78 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.49 kcal Atomic # 16 Polarization: 153.35 SS G_CDS: -0.18 Total: 153.17 kcal Total: -82.31 3.30 -79.01 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000269698768.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.375 kcal (2) G-P(sol) polarization free energy of solvation -82.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds