Wall clock time and date at job start Tue Mar 31 2020 13:53:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34646 * 116.99756 * 2 1 4 4 O 1.21502 * 120.00562 * 0.02562 * 3 2 1 5 5 N 1.34781 * 119.99293 * 180.02562 * 3 2 1 6 6 C 1.39956 * 119.99628 * 185.31416 * 5 3 2 7 7 C 1.38866 * 120.06823 * 33.26728 * 6 5 3 8 8 C 1.38112 * 119.92935 * 180.02562 * 7 6 5 9 9 C 1.38286 * 120.06710 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.92811 * 179.97438 * 9 8 7 11 11 O 1.45201 * 109.47270 * 89.99897 * 10 9 8 12 12 C 1.34233 * 117.00064 * 180.02562 * 11 10 9 13 13 O 1.20826 * 119.99589 * 359.97438 * 12 11 10 14 14 C 1.50692 * 119.99945 * 180.02562 * 12 11 10 15 15 S 1.80998 * 109.47059 * 179.97438 * 14 12 11 16 16 C 1.76201 * 99.99997 * 180.02562 * 15 14 12 17 17 H 1.07994 * 120.00389 * 359.97438 * 16 15 14 18 18 C 1.38804 * 119.99892 * 180.02562 * 16 15 14 19 19 N 1.31630 * 120.00255 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 119.99803 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47243 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.46866 * 119.99823 * 20 18 16 23 23 H 1.48502 * 109.46885 * 239.99475 * 20 18 16 24 24 C 1.38281 * 120.14411 * 0.23227 * 9 8 7 25 25 C 1.38119 * 120.06497 * 359.49407 * 24 9 8 26 26 H 1.09002 * 109.47109 * 299.99956 * 1 2 3 27 27 H 1.09003 * 109.46976 * 59.99995 * 1 2 3 28 28 H 1.09000 * 109.47169 * 179.97438 * 1 2 3 29 29 H 0.96994 * 120.00215 * 5.31506 * 5 3 2 30 30 H 1.08000 * 120.03356 * 359.97438 * 7 6 5 31 31 H 1.07997 * 119.97028 * 179.97438 * 8 7 6 32 32 H 1.09001 * 109.47255 * 329.99936 * 10 9 8 33 33 H 1.09002 * 109.46730 * 209.99751 * 10 9 8 34 34 H 1.08998 * 109.47637 * 299.99907 * 14 12 11 35 35 H 1.09002 * 109.47330 * 59.99975 * 14 12 11 36 36 H 0.96999 * 120.00366 * 180.02562 * 19 18 16 37 37 H 1.07996 * 119.96936 * 179.72566 * 24 9 8 38 38 H 1.07998 * 120.03501 * 180.23113 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0633 1.1997 0.0000 4 8 1.4016 2.2188 0.0005 5 7 3.4093 1.2702 -0.0005 6 6 4.0450 2.5119 0.1117 7 6 3.4693 3.5222 0.8709 8 6 4.0989 4.7467 0.9793 9 6 5.3010 4.9674 0.3324 10 6 5.9849 6.3049 0.4523 11 8 6.8805 6.2898 1.5951 12 6 7.5709 7.4139 1.8432 13 8 7.4318 8.3783 1.1288 14 6 8.5203 7.4726 3.0120 15 16 9.2937 9.1076 3.0795 16 6 10.3223 8.9013 4.4952 17 1 10.3278 7.9610 5.0263 18 6 11.1249 9.9477 4.9283 19 7 11.1180 11.0939 4.2812 20 14 12.2149 9.7291 6.4295 21 1 12.0411 8.3578 6.9721 22 1 13.6346 9.9322 6.0441 23 1 11.8361 10.7236 7.4652 24 6 5.8742 3.9652 -0.4287 25 6 5.2524 2.7366 -0.5364 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 3.9373 0.4603 -0.0787 30 1 2.5299 3.3508 1.3754 31 1 3.6515 5.5330 1.5692 32 1 5.2360 7.0851 0.5879 33 1 6.5563 6.5033 -0.4545 34 1 7.9708 7.2918 3.9359 35 1 9.2910 6.7112 2.8927 36 1 11.6792 11.8251 4.5837 37 1 6.8109 4.1420 -0.9363 38 1 5.7024 1.9530 -1.1279 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272220502.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:19 Heat of formation + Delta-G solvation = -133.505913 kcal Electronic energy + Delta-G solvation = -23119.224789 eV Core-core repulsion = 19246.690396 eV Total energy + Delta-G solvation = -3872.534392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.35813 -40.15235 -39.40659 -37.22571 -36.17263 -35.31099 -32.48150 -31.50116 -31.26630 -29.62438 -28.18095 -26.06520 -25.50261 -23.44867 -22.59909 -21.27735 -20.88210 -19.42453 -18.14051 -17.94039 -17.21561 -17.13029 -16.75099 -16.37833 -16.20285 -15.24386 -15.00792 -14.84412 -14.56671 -14.16852 -14.07048 -14.03552 -13.77117 -13.27038 -13.14157 -12.72874 -12.62127 -12.56203 -12.02717 -11.80584 -11.58995 -11.33311 -11.09410 -11.07649 -11.01936 -10.81954 -10.73111 -10.45641 -10.01193 -9.88754 -9.21929 -9.12016 -8.51242 -8.34671 -6.59723 -6.27117 -3.99557 0.76970 1.12535 1.58024 2.23083 2.67572 2.71736 3.19960 3.23602 3.29321 3.42759 3.63167 3.73050 4.15116 4.50547 4.55841 4.62391 4.68043 4.71439 4.92635 4.98366 5.06550 5.08870 5.12582 5.21191 5.37568 5.39544 5.61210 5.63201 5.77295 5.79578 5.85093 5.94166 6.09630 6.11853 6.34147 6.64034 6.70151 6.77152 7.56189 7.71010 8.18326 8.31044 9.18590 10.80450 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.031952 B = 0.001779 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.102156 B =15736.923191 C =16076.528565 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 O -0.369 6.369 3 C 0.647 3.353 4 O -0.550 6.550 5 N -0.650 5.650 6 C 0.162 3.838 7 C -0.123 4.123 8 C -0.073 4.073 9 C -0.102 4.102 10 C 0.107 3.893 11 O -0.356 6.356 12 C 0.479 3.521 13 O -0.488 6.488 14 C -0.128 4.128 15 S -0.059 6.059 16 C -0.535 4.535 17 H 0.077 0.923 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.922 3.078 21 H -0.271 1.271 22 H -0.279 1.279 23 H -0.279 1.279 24 C -0.073 4.073 25 C -0.143 4.143 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.418 0.582 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.103 0.897 35 H 0.103 0.897 36 H 0.269 0.731 37 H 0.133 0.867 38 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.823 -23.804 -9.737 31.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.283 6.283 3 C 0.401 3.599 4 O -0.437 6.437 5 N -0.301 5.301 6 C 0.069 3.931 7 C -0.143 4.143 8 C -0.091 4.091 9 C -0.103 4.103 10 C 0.033 3.967 11 O -0.274 6.274 12 C 0.320 3.680 13 O -0.374 6.374 14 C -0.276 4.276 15 S 0.167 5.833 16 C -0.684 4.684 17 H 0.095 0.905 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.748 3.252 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.205 1.205 24 C -0.092 4.092 25 C -0.163 4.163 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.124 0.876 29 H 0.255 0.745 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.079 0.921 37 H 0.151 0.849 38 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -18.424 -22.031 -10.659 30.634 hybrid contribution 0.857 -1.548 1.577 2.370 sum -17.568 -23.579 -9.083 30.775 Atomic orbital electron populations 1.23290 0.73606 1.03873 1.03113 1.86247 1.24786 1.30489 1.86754 1.18094 0.83079 0.82540 0.76223 1.91050 1.64311 1.34610 1.53747 1.41957 1.03542 1.09380 1.75229 1.17503 0.93443 0.84668 0.97462 1.21126 1.01241 0.93001 0.98897 1.21005 0.94173 0.96733 0.97226 1.19599 0.95536 0.95357 0.99767 1.21724 0.92161 0.94472 0.88326 1.86589 1.53362 1.39869 1.47605 1.23322 0.79027 0.80085 0.85550 1.90671 1.62730 1.36234 1.47746 1.23299 0.99426 1.08566 0.96332 1.85416 1.51782 1.06212 1.39884 1.22891 1.28566 1.02528 1.14367 0.90522 1.25006 0.96513 0.94368 0.97643 1.70021 1.38175 1.02969 1.39072 0.86070 0.79594 0.78436 0.81127 1.19506 1.20518 1.20513 1.20898 0.99133 0.91570 0.97561 1.20792 0.95926 0.98358 1.01261 0.91491 0.91533 0.87602 0.74499 0.84480 0.85037 0.90231 0.90225 0.87912 0.87910 0.92127 0.84888 0.85113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.26 10.56 101.05 1.07 1.33 16 2 O -0.37 -2.72 10.62 -40.34 -0.43 -3.15 16 3 C 0.65 6.05 8.49 54.06 0.46 6.51 16 4 O -0.55 -6.76 13.82 -19.27 -0.27 -7.03 16 5 N -0.65 -4.94 5.35 -14.27 -0.08 -5.02 16 6 C 0.16 1.53 6.28 -83.68 -0.53 1.00 16 7 C -0.12 -1.32 8.66 -39.40 -0.34 -1.66 16 8 C -0.07 -0.79 9.69 -39.61 -0.38 -1.18 16 9 C -0.10 -1.14 5.52 -104.59 -0.58 -1.72 16 10 C 0.11 1.39 5.59 36.01 0.20 1.59 16 11 O -0.36 -5.67 10.20 -39.27 -0.40 -6.07 16 12 C 0.48 9.16 7.97 36.00 0.29 9.44 16 13 O -0.49 -10.65 15.61 -18.75 -0.29 -10.95 16 14 C -0.13 -2.62 6.27 36.00 0.23 -2.39 16 15 S -0.06 -1.58 20.58 -107.50 -2.21 -3.79 16 16 C -0.54 -15.02 9.50 30.94 0.29 -14.72 16 17 H 0.08 2.04 7.80 -52.49 -0.41 1.63 16 18 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 19 N -0.87 -25.74 13.22 55.49 0.73 -25.01 16 20 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 21 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 22 H -0.28 -6.31 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 C -0.07 -0.70 9.69 -39.61 -0.38 -1.08 16 25 C -0.14 -1.19 9.96 -39.39 -0.39 -1.58 16 26 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.11 0.19 8.14 -51.93 -0.42 -0.24 16 29 H 0.42 1.87 8.92 -40.82 -0.36 1.51 16 30 H 0.14 1.54 6.41 -52.49 -0.34 1.20 16 31 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 32 H 0.08 1.01 8.08 -51.93 -0.42 0.59 16 33 H 0.08 0.98 8.07 -51.93 -0.42 0.56 16 34 H 0.10 1.95 8.14 -51.92 -0.42 1.52 16 35 H 0.10 1.94 8.14 -51.91 -0.42 1.51 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -35.26 356.42 -7.23 -42.49 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -4.47 Total: -0.49 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -0.17 Total: -2.47 kcal Atomic # 7 Polarization: -30.69 SS G_CDS: 0.66 Total: -30.03 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -1.39 Total: -27.20 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -35.26 -7.23 -42.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272220502.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.019 kcal (2) G-P(sol) polarization free energy of solvation -35.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds