Wall clock time and date at job start Tue Mar 31 2020 13:48:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34751 * 117.00131 * 2 1 4 4 O 1.21507 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.47473 * 120.00120 * 179.97438 * 3 2 1 6 6 C 1.39781 * 120.05770 * 0.02562 * 5 3 2 7 7 C 1.37719 * 120.01306 * 180.02562 * 6 5 3 8 8 C 1.39004 * 120.14099 * 0.02562 * 7 6 5 9 9 N 1.39600 * 119.93951 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99748 * 24.87727 * 9 8 7 11 11 O 1.21285 * 120.00136 * 5.52393 * 10 9 8 12 12 C 1.50699 * 119.99507 * 185.52344 * 10 9 8 13 13 S 1.81003 * 109.46794 * 179.97438 * 12 10 9 14 14 C 1.76190 * 100.00037 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00523 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31633 * 120.00181 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99982 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47515 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46899 * 120.00227 * 18 16 14 21 21 H 1.48500 * 109.46911 * 240.00071 * 18 16 14 22 22 C 1.39558 * 120.12450 * 359.97438 * 8 7 6 23 23 O 1.35981 * 120.01083 * 180.02562 * 22 8 7 24 24 C 1.42896 * 116.99955 * 179.97438 * 23 22 8 25 25 C 1.38097 * 119.97652 * 0.27371 * 22 8 7 26 26 H 1.08996 * 109.46694 * 299.99445 * 1 2 3 27 27 H 1.08997 * 109.47179 * 59.99231 * 1 2 3 28 28 H 1.08995 * 109.46933 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99466 * 0.02562 * 6 5 3 30 30 H 1.07997 * 119.93120 * 179.97438 * 7 6 5 31 31 H 0.96996 * 119.99757 * 204.87770 * 9 8 7 32 32 H 1.09000 * 109.47095 * 299.99391 * 12 10 9 33 33 H 1.08999 * 109.47119 * 60.00228 * 12 10 9 34 34 H 0.96996 * 120.00208 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.46886 * 179.97438 * 24 23 22 36 36 H 1.09005 * 109.46763 * 59.99717 * 24 23 22 37 37 H 1.08999 * 109.47181 * 300.00035 * 24 23 22 38 38 H 1.08006 * 120.06650 * 179.72675 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5365 1.2778 0.0006 6 6 4.2990 0.1063 0.0006 7 6 5.6742 0.1794 0.0016 8 6 6.3074 1.4169 0.0033 9 7 7.7017 1.4861 0.0049 10 6 8.4278 0.4623 -0.4861 11 8 7.8719 -0.4742 -1.0200 12 6 9.9303 0.4812 -0.3717 13 16 10.6111 -1.0208 -1.1178 14 6 12.3304 -0.7423 -0.8520 15 1 12.6611 0.1571 -0.3538 16 6 13.2599 -1.6792 -1.2820 17 7 12.8569 -2.7756 -1.8887 18 14 15.0827 -1.3841 -0.9995 19 1 15.2720 -0.0873 -0.3012 20 1 15.6382 -2.4804 -0.1659 21 1 15.7870 -1.3504 -2.3065 22 6 5.5518 2.5902 0.0033 23 8 6.1736 3.7996 0.0043 24 6 5.3379 4.9587 0.0037 25 6 4.1725 2.5227 0.0074 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.8096 -0.8564 -0.0003 30 1 6.2621 -0.7266 0.0021 31 1 8.1478 2.2711 0.3593 32 1 10.3232 1.3554 -0.8908 33 1 10.2141 0.5249 0.6798 34 1 13.5064 -3.4302 -2.1895 35 1 5.9591 5.8544 0.0051 36 1 4.7076 4.9526 0.8930 37 1 4.7097 4.9532 -0.8870 38 1 3.5864 3.4299 0.0118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275388042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:20 Heat of formation + Delta-G solvation = -122.827371 kcal Electronic energy + Delta-G solvation = -23978.468825 eV Core-core repulsion = 20106.397489 eV Total energy + Delta-G solvation = -3872.071336 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.14286 -40.35530 -39.26214 -37.38111 -36.60876 -34.78591 -32.48240 -31.12005 -30.47502 -29.01586 -28.17618 -27.19407 -25.55833 -24.04854 -22.70064 -21.45794 -20.37461 -18.90257 -18.30684 -17.60006 -17.20184 -16.64155 -16.59483 -16.54027 -16.09958 -15.71333 -15.21729 -14.85117 -14.56057 -14.18727 -13.99370 -13.77630 -13.70285 -13.46042 -13.02778 -12.98630 -12.63147 -12.42776 -12.16197 -11.90481 -11.72958 -11.36364 -11.10612 -11.07869 -11.07690 -10.82401 -10.80643 -10.58129 -9.87885 -9.56483 -9.12443 -8.84237 -8.33366 -7.99979 -6.57850 -6.27327 -3.98863 0.42701 1.18611 2.23621 2.42138 2.75173 2.84871 2.96513 3.18808 3.23707 3.28530 3.52138 3.62422 4.14317 4.47995 4.55391 4.73443 4.79106 4.82635 4.89110 4.89839 4.96221 4.98892 5.08459 5.20438 5.21706 5.27887 5.51441 5.65109 5.70705 5.75415 5.93139 6.02682 6.07665 6.11364 6.31407 6.59348 7.06129 7.37166 7.49676 7.55247 8.25188 8.30230 9.18496 10.80136 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.002417 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.385673 B =11581.104847 C =12717.105484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.515 3.485 4 O -0.514 6.514 5 C -0.127 4.127 6 C -0.064 4.064 7 C -0.119 4.119 8 C 0.181 3.819 9 N -0.667 5.667 10 C 0.533 3.467 11 O -0.491 6.491 12 C -0.154 4.154 13 S -0.056 6.056 14 C -0.536 4.536 15 H 0.075 0.925 16 C 0.074 3.926 17 N -0.867 5.867 18 Si 0.920 3.080 19 H -0.271 1.271 20 H -0.279 1.279 21 H -0.280 1.280 22 C 0.076 3.924 23 O -0.315 6.315 24 C 0.028 3.972 25 C -0.122 4.122 26 H 0.063 0.937 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.144 0.856 30 H 0.167 0.833 31 H 0.417 0.583 32 H 0.095 0.905 33 H 0.097 0.903 34 H 0.269 0.731 35 H 0.102 0.898 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.268 11.749 6.122 24.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.361 3.639 4 O -0.404 6.404 5 C -0.129 4.129 6 C -0.083 4.083 7 C -0.139 4.139 8 C 0.083 3.917 9 N -0.312 5.312 10 C 0.321 3.679 11 O -0.364 6.364 12 C -0.305 4.305 13 S 0.171 5.829 14 C -0.684 4.684 15 H 0.093 0.907 16 C -0.136 4.136 17 N -0.502 5.502 18 Si 0.746 3.254 19 H -0.196 1.196 20 H -0.205 1.205 21 H -0.205 1.205 22 C 0.029 3.971 23 O -0.229 6.229 24 C -0.067 4.067 25 C -0.141 4.141 26 H 0.081 0.919 27 H 0.082 0.918 28 H 0.121 0.879 29 H 0.162 0.838 30 H 0.184 0.816 31 H 0.254 0.746 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.078 0.922 35 H 0.121 0.879 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -21.058 10.330 5.151 24.014 hybrid contribution 1.519 1.921 0.909 2.612 sum -19.539 12.251 6.060 23.845 Atomic orbital electron populations 1.23285 0.75976 1.03857 1.02556 1.86573 1.23528 1.32532 1.84259 1.21112 0.89056 0.81365 0.72345 1.90815 1.66939 1.36077 1.46563 1.18710 0.88807 0.94258 1.11167 1.21310 0.93136 0.97941 0.95891 1.21432 0.94462 0.97412 1.00591 1.17497 0.83359 0.91483 0.99367 1.43585 1.03635 1.22244 1.61725 1.20617 0.89678 0.81204 0.76426 1.90672 1.72165 1.33680 1.39843 1.23558 0.92147 1.08508 1.06267 1.85401 1.03719 1.18314 1.75475 1.22891 0.91084 1.09408 1.45049 0.90728 1.25001 0.99697 0.94420 0.94458 1.70017 1.34848 1.08772 1.36562 0.86099 0.82757 0.78389 0.78146 1.19585 1.20533 1.20536 1.18397 0.90350 0.84835 1.03516 1.86032 1.35464 1.11937 1.89494 1.23089 0.96019 0.86019 1.01589 1.20983 0.92357 0.98104 1.02665 0.91861 0.91835 0.87863 0.83839 0.81609 0.74645 0.88632 0.88515 0.92151 0.87948 0.92507 0.92446 0.83795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.57 101.05 1.07 1.33 16 2 O -0.35 -3.69 9.80 -40.63 -0.40 -4.09 16 3 C 0.52 6.25 7.89 34.49 0.27 6.53 16 4 O -0.51 -7.09 16.13 -19.27 -0.31 -7.40 16 5 C -0.13 -1.53 5.87 -104.97 -0.62 -2.15 16 6 C -0.06 -0.76 9.60 -39.19 -0.38 -1.14 16 7 C -0.12 -1.63 8.69 -39.49 -0.34 -1.98 16 8 C 0.18 2.47 6.44 -83.55 -0.54 1.93 16 9 N -0.67 -9.16 5.26 -9.75 -0.05 -9.21 16 10 C 0.53 9.31 7.65 -10.98 -0.08 9.23 16 11 O -0.49 -10.09 13.01 5.55 0.07 -10.02 16 12 C -0.15 -2.91 6.16 36.01 0.22 -2.69 16 13 S -0.06 -1.44 20.57 -107.50 -2.21 -3.65 16 14 C -0.54 -14.79 9.50 30.94 0.29 -14.49 16 15 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 16 C 0.07 2.05 5.49 -17.43 -0.10 1.96 16 17 N -0.87 -25.54 13.22 55.49 0.73 -24.80 16 18 Si 0.92 20.95 29.55 -169.99 -5.02 15.93 16 19 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 20 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 C 0.08 0.92 6.70 -39.14 -0.26 0.66 16 23 O -0.32 -3.35 9.89 -19.68 -0.19 -3.55 16 24 C 0.03 0.20 9.81 101.05 0.99 1.19 16 25 C -0.12 -1.40 8.57 -39.05 -0.33 -1.73 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.14 1.46 7.60 -52.49 -0.40 1.06 16 30 H 0.17 2.55 5.77 -52.49 -0.30 2.25 16 31 H 0.42 4.63 8.33 -40.82 -0.34 4.29 16 32 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 33 H 0.10 1.66 8.14 -51.92 -0.42 1.24 16 34 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 35 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.35 7.65 -51.93 -0.40 -0.05 16 37 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 38 H 0.14 1.46 5.87 -52.48 -0.31 1.16 16 LS Contribution 349.54 15.07 5.27 5.27 Total: -1.00 -34.23 349.54 -6.15 -40.38 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.22 Total: 2.51 kcal Atomic # 6 Polarization: -1.56 SS G_CDS: 0.20 Total: -1.36 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.68 Total: -34.01 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: -0.83 Total: -25.06 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -2.21 Total: -3.65 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -34.23 -6.15 -40.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275388042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.452 kcal (2) G-P(sol) polarization free energy of solvation -34.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds