Wall clock time and date at job start Tue Mar 31 2020 13:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34751 * 117.00131 * 2 1 4 4 O 1.21507 * 119.99909 * 0.02562 * 3 2 1 5 5 C 1.47473 * 120.00120 * 179.97438 * 3 2 1 6 6 C 1.39781 * 120.05770 * 0.02562 * 5 3 2 7 7 C 1.37719 * 120.01306 * 180.02562 * 6 5 3 8 8 C 1.39004 * 120.14099 * 0.02562 * 7 6 5 9 9 N 1.39600 * 119.93951 * 179.97438 * 8 7 6 10 10 C 1.34780 * 119.99748 * 24.87727 * 9 8 7 11 11 O 1.21285 * 120.00136 * 5.52393 * 10 9 8 12 12 C 1.50699 * 119.99507 * 185.52344 * 10 9 8 13 13 S 1.81003 * 109.46794 * 179.97438 * 12 10 9 14 14 C 1.76190 * 100.00037 * 179.97438 * 13 12 10 15 15 H 1.08000 * 120.00523 * 0.02562 * 14 13 12 16 16 C 1.38800 * 120.00144 * 179.97438 * 14 13 12 17 17 N 1.31633 * 120.00181 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 119.99982 * 180.02562 * 16 14 13 19 19 H 1.48499 * 109.47515 * 0.02562 * 18 16 14 20 20 H 1.48504 * 109.46899 * 120.00227 * 18 16 14 21 21 H 1.48500 * 109.46911 * 240.00071 * 18 16 14 22 22 C 1.39558 * 120.12450 * 359.97438 * 8 7 6 23 23 O 1.35981 * 120.01083 * 180.02562 * 22 8 7 24 24 C 1.42896 * 116.99955 * 179.97438 * 23 22 8 25 25 C 1.38097 * 119.97652 * 0.27371 * 22 8 7 26 26 H 1.08996 * 109.46694 * 299.99445 * 1 2 3 27 27 H 1.08997 * 109.47179 * 59.99231 * 1 2 3 28 28 H 1.08995 * 109.46933 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99466 * 0.02562 * 6 5 3 30 30 H 1.07997 * 119.93120 * 179.97438 * 7 6 5 31 31 H 0.96996 * 119.99757 * 204.87770 * 9 8 7 32 32 H 1.09000 * 109.47095 * 299.99391 * 12 10 9 33 33 H 1.08999 * 109.47119 * 60.00228 * 12 10 9 34 34 H 0.96996 * 120.00208 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.46886 * 179.97438 * 24 23 22 36 36 H 1.09005 * 109.46763 * 59.99717 * 24 23 22 37 37 H 1.08999 * 109.47181 * 300.00035 * 24 23 22 38 38 H 1.08006 * 120.06650 * 179.72675 * 25 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2006 0.0000 4 8 1.4020 2.2197 0.0005 5 6 3.5365 1.2778 0.0006 6 6 4.2990 0.1063 0.0006 7 6 5.6742 0.1794 0.0016 8 6 6.3074 1.4169 0.0033 9 7 7.7017 1.4861 0.0049 10 6 8.4278 0.4623 -0.4861 11 8 7.8719 -0.4742 -1.0200 12 6 9.9303 0.4812 -0.3717 13 16 10.6111 -1.0208 -1.1178 14 6 12.3304 -0.7423 -0.8520 15 1 12.6611 0.1571 -0.3538 16 6 13.2599 -1.6792 -1.2820 17 7 12.8569 -2.7756 -1.8887 18 14 15.0827 -1.3841 -0.9995 19 1 15.2720 -0.0873 -0.3012 20 1 15.6382 -2.4804 -0.1659 21 1 15.7870 -1.3504 -2.3065 22 6 5.5518 2.5902 0.0033 23 8 6.1736 3.7996 0.0043 24 6 5.3379 4.9587 0.0037 25 6 4.1725 2.5227 0.0074 26 1 -0.3632 0.5137 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 -0.0005 29 1 3.8096 -0.8564 -0.0003 30 1 6.2621 -0.7266 0.0021 31 1 8.1478 2.2711 0.3593 32 1 10.3232 1.3554 -0.8908 33 1 10.2141 0.5249 0.6798 34 1 13.5064 -3.4302 -2.1895 35 1 5.9591 5.8544 0.0051 36 1 4.7076 4.9526 0.8930 37 1 4.7097 4.9532 -0.8870 38 1 3.5864 3.4299 0.0118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275388042.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:48:19 Heat of formation + Delta-G solvation = -145.543748 kcal Electronic energy + Delta-G solvation = -23979.453881 eV Core-core repulsion = 20106.397489 eV Total energy + Delta-G solvation = -3873.056392 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.15466 -41.34619 -40.35115 -38.30663 -37.52124 -35.99749 -34.57426 -32.31950 -31.40508 -30.26008 -28.86568 -27.92141 -27.63420 -25.05810 -23.67244 -22.43140 -21.59591 -19.99686 -19.70999 -18.96021 -18.27607 -17.83133 -17.43515 -17.38918 -17.01196 -16.86997 -16.61257 -16.45348 -16.14884 -15.32491 -15.05326 -14.85424 -14.67292 -14.52548 -14.45801 -14.00013 -13.85881 -13.48162 -13.15790 -13.08688 -12.91105 -12.74555 -12.61557 -12.46881 -12.11945 -11.83390 -11.78162 -11.76800 -11.70046 -11.14913 -10.93381 -10.28509 -9.83264 -9.02357 -8.65251 -8.34312 -6.11680 -0.57399 0.23098 1.15909 1.21905 1.42592 1.44838 1.57147 1.61206 1.62458 2.01330 2.19091 2.27002 2.63117 3.00519 3.26389 3.60221 3.62990 3.74182 3.92782 4.02414 4.24494 4.27102 4.30399 4.34644 4.37116 4.39627 4.49244 4.63972 4.68530 4.75427 4.82244 4.97604 5.12056 5.20194 5.29381 5.44180 5.56892 6.19537 6.21132 6.24524 6.59865 6.97075 7.07928 8.74925 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022696 B = 0.002417 C = 0.002201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1233.385673 B =11581.104847 C =12717.105484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.357 6.357 3 C 0.518 3.482 4 O -0.533 6.533 5 C -0.128 4.128 6 C -0.061 4.061 7 C -0.129 4.129 8 C 0.158 3.842 9 N -0.648 5.648 10 C 0.538 3.462 11 O -0.529 6.529 12 C -0.130 4.130 13 S -0.140 6.140 14 C -0.545 4.545 15 H 0.084 0.916 16 C 0.014 3.986 17 N -0.910 5.910 18 Si 0.997 3.003 19 H -0.257 1.257 20 H -0.275 1.275 21 H -0.275 1.275 22 C 0.088 3.912 23 O -0.323 6.323 24 C 0.018 3.982 25 C -0.120 4.120 26 H 0.066 0.934 27 H 0.064 0.936 28 H 0.133 0.867 29 H 0.158 0.842 30 H 0.146 0.854 31 H 0.431 0.569 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.271 0.729 35 H 0.126 0.874 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.639 13.843 7.070 25.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.273 6.273 3 C 0.365 3.635 4 O -0.424 6.424 5 C -0.130 4.130 6 C -0.080 4.080 7 C -0.149 4.149 8 C 0.061 3.939 9 N -0.293 5.293 10 C 0.326 3.674 11 O -0.404 6.404 12 C -0.281 4.281 13 S 0.087 5.913 14 C -0.693 4.693 15 H 0.102 0.898 16 C -0.191 4.191 17 N -0.547 5.547 18 Si 0.819 3.181 19 H -0.180 1.180 20 H -0.200 1.200 21 H -0.201 1.201 22 C 0.040 3.960 23 O -0.237 6.237 24 C -0.076 4.076 25 C -0.139 4.139 26 H 0.085 0.915 27 H 0.083 0.917 28 H 0.151 0.849 29 H 0.175 0.825 30 H 0.164 0.836 31 H 0.270 0.730 32 H 0.133 0.867 33 H 0.136 0.864 34 H 0.080 0.920 35 H 0.144 0.856 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -21.459 12.465 6.122 25.560 hybrid contribution 1.414 1.374 0.651 2.077 sum -20.044 13.839 6.773 25.282 Atomic orbital electron populations 1.23619 0.74015 1.05971 1.02816 1.86564 1.25467 1.31569 1.83695 1.21079 0.88967 0.81596 0.71893 1.90803 1.67293 1.36735 1.47608 1.18860 0.89122 0.94478 1.10545 1.21378 0.92392 0.98765 0.95438 1.21309 0.95117 0.96977 1.01513 1.17599 0.83018 0.92204 1.01102 1.43202 1.03807 1.21547 1.60781 1.20299 0.89163 0.81559 0.76429 1.90675 1.72543 1.35348 1.41838 1.23370 0.92942 1.04931 1.06874 1.85544 1.04736 1.23918 1.77125 1.23238 0.91470 1.09763 1.44843 0.89753 1.26098 1.05022 0.94010 0.93983 1.70174 1.36637 1.09967 1.37918 0.84924 0.76091 0.78848 0.78206 1.18021 1.20025 1.20076 1.18317 0.90266 0.85069 1.02332 1.86033 1.36457 1.12126 1.89112 1.23414 0.96597 0.85280 1.02354 1.21165 0.92247 0.98550 1.01942 0.91495 0.91713 0.84910 0.82468 0.83628 0.73026 0.86651 0.86392 0.91996 0.85619 0.91399 0.91977 0.82263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.57 113.37 1.20 1.55 16 2 O -0.36 -6.95 9.80 -56.61 -0.55 -7.51 16 3 C 0.52 11.89 7.89 70.26 0.55 12.44 16 4 O -0.53 -13.93 16.13 19.81 0.32 -13.61 16 5 C -0.13 -2.93 5.87 -20.09 -0.12 -3.05 16 6 C -0.06 -1.43 9.60 22.52 0.22 -1.21 16 7 C -0.13 -3.58 8.69 22.33 0.19 -3.39 16 8 C 0.16 4.21 6.44 38.41 0.25 4.45 16 9 N -0.65 -17.20 5.26 -303.13 -1.60 -18.80 16 10 C 0.54 18.77 7.65 87.66 0.67 19.44 16 11 O -0.53 -22.40 13.01 -3.04 -0.04 -22.44 16 12 C -0.13 -4.84 6.16 71.24 0.44 -4.40 16 13 S -0.14 -7.45 20.57 -56.49 -1.16 -8.61 16 14 C -0.55 -30.17 9.50 67.95 0.65 -29.52 16 15 H 0.08 4.33 7.80 -2.91 -0.02 4.30 16 16 C 0.01 0.76 5.49 84.86 0.47 1.23 16 17 N -0.91 -54.79 13.22 21.65 0.29 -54.50 16 18 Si 1.00 42.75 29.55 68.60 2.03 44.78 16 19 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 20 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 21 H -0.28 -11.51 7.11 99.48 0.71 -10.80 16 22 C 0.09 1.98 6.70 22.55 0.15 2.13 16 23 O -0.32 -6.14 9.89 -93.34 -0.92 -7.06 16 24 C 0.02 0.20 9.81 113.37 1.11 1.31 16 25 C -0.12 -2.55 8.57 22.61 0.19 -2.35 16 26 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 29 H 0.16 3.13 7.60 -2.91 -0.02 3.11 16 30 H 0.15 4.70 5.77 -2.91 -0.02 4.69 16 31 H 0.43 8.80 8.33 -92.71 -0.77 8.03 16 32 H 0.12 3.84 8.14 -2.39 -0.02 3.82 16 33 H 0.12 3.88 8.14 -2.40 -0.02 3.86 16 34 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 35 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.64 7.65 -2.38 -0.02 0.62 16 37 H 0.06 0.67 7.67 -2.39 -0.02 0.65 16 38 H 0.16 2.88 5.87 -2.91 -0.02 2.86 16 Total: -1.00 -75.42 349.54 4.67 -70.74 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.35 Total: 18.36 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 5.97 Total: -1.36 kcal Atomic # 7 Polarization: -71.99 SS G_CDS: -1.31 Total: -73.30 kcal Atomic # 8 Polarization: -49.42 SS G_CDS: -1.20 Total: -50.62 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -7.45 SS G_CDS: -1.16 Total: -8.61 kcal Total: -75.42 4.67 -70.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275388042.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.800 kcal (2) G-P(sol) polarization free energy of solvation -75.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds