Wall clock time and date at job start Tue Mar 31 2020 14:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48497 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46724 * 299.99545 * 3 2 1 6 6 H 1.48499 * 109.46948 * 59.99801 * 3 2 1 7 7 C 1.37875 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00360 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47440 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47101 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00285 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99819 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46849 * 179.97438 * 14 13 11 16 16 O 1.20829 * 119.99937 * 359.97438 * 15 14 13 17 17 O 1.34226 * 119.99841 * 179.97438 * 15 14 13 18 18 C 1.45201 * 116.99677 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47197 * 180.02562 * 18 17 15 20 20 C 1.38237 * 120.00455 * 0.02562 * 19 18 17 21 21 C 1.38224 * 120.01313 * 179.74163 * 20 19 18 22 22 C 1.38264 * 120.02445 * 0.26351 * 21 20 19 23 23 C 1.38190 * 120.01695 * 0.02562 * 22 21 20 24 24 C 1.38328 * 120.01174 * 180.27757 * 19 18 17 25 25 Cl 1.73603 * 120.01189 * 0.02562 * 24 19 18 26 26 H 0.97004 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46735 * 59.99644 * 9 7 2 28 28 H 1.08999 * 109.47055 * 300.00609 * 9 7 2 29 29 H 1.08991 * 109.46990 * 60.00286 * 10 9 7 30 30 H 1.09004 * 109.46954 * 300.00203 * 10 9 7 31 31 H 0.96996 * 119.99425 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47185 * 59.99970 * 14 13 11 33 33 H 1.08996 * 109.47364 * 299.99524 * 14 13 11 34 34 H 1.09001 * 109.47024 * 60.00459 * 18 17 15 35 35 H 1.08995 * 109.47608 * 300.00057 * 18 17 15 36 36 H 1.08002 * 119.99593 * 0.02780 * 20 19 18 37 37 H 1.07996 * 119.98813 * 180.23496 * 21 20 19 38 38 H 1.08004 * 119.98845 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.00844 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 -0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1656 -6.1344 0.0003 14 6 1.4330 -7.4031 0.0003 15 6 2.4123 -8.5486 0.0001 16 8 3.6002 -8.3278 -0.0004 17 8 1.9648 -9.8141 0.0006 18 6 2.9648 -10.8668 -0.0001 19 6 2.2807 -12.2096 -0.0001 20 6 0.9002 -12.2820 0.0000 21 6 0.2725 -13.5135 -0.0054 22 6 1.0249 -14.6735 -0.0054 23 6 2.4050 -14.6024 0.0005 24 6 3.0338 -13.3698 0.0050 25 17 4.7675 -13.2796 0.0122 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 3.1355 -6.1344 0.0006 32 1 0.8066 -7.4610 -0.8899 33 1 0.8061 -7.4607 0.8900 34 1 3.5882 -10.7763 0.8894 35 1 3.5869 -10.7765 -0.8906 36 1 0.3120 -11.3763 -0.0004 37 1 -0.8060 -13.5697 -0.0091 38 1 0.5338 -15.6355 -0.0092 39 1 2.9925 -15.5086 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291639555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:27 Heat of formation + Delta-G solvation = -114.106494 kcal Electronic energy + Delta-G solvation = -23185.504429 eV Core-core repulsion = 19311.767552 eV Total energy + Delta-G solvation = -3873.736877 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.07269 -39.86229 -39.08689 -37.07343 -36.93642 -34.37893 -33.46427 -32.80702 -31.27240 -31.10695 -28.84946 -26.89667 -25.35762 -23.41003 -22.28256 -21.74407 -21.02795 -19.93943 -18.02402 -17.92691 -17.17464 -17.12368 -16.48278 -15.84486 -15.84311 -15.47679 -15.39104 -14.94517 -14.59562 -14.39774 -14.33165 -13.87231 -13.68412 -13.16696 -13.00202 -12.79114 -12.21199 -12.18250 -12.05930 -12.03523 -11.82490 -11.35493 -11.28985 -11.17092 -10.94309 -10.93655 -10.57852 -9.97443 -9.70313 -9.44255 -9.27333 -9.22933 -9.06066 -9.02673 -8.32428 -5.96442 -4.00627 0.55064 0.70727 1.57518 1.78456 1.97871 3.05408 3.13400 3.33215 3.39942 3.43066 3.48291 3.92208 4.18481 4.40862 4.44971 4.48149 4.70891 4.75701 4.77019 4.94050 5.10948 5.11614 5.14743 5.37532 5.38827 5.60344 5.63254 5.69365 5.85175 6.01736 6.21065 6.23202 6.23292 6.44611 6.86723 7.28315 7.73188 7.75664 7.84736 8.06170 8.37396 8.64489 9.07787 9.63086 11.14537 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.033638 B = 0.001734 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.188309 B =16145.235089 C =16946.365287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.893 3.107 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.527 4.527 8 H 0.057 0.943 9 C 0.036 3.964 10 C -0.128 4.128 11 C 0.516 3.484 12 O -0.531 6.531 13 N -0.739 5.739 14 C 0.129 3.871 15 C 0.464 3.536 16 O -0.499 6.499 17 O -0.350 6.350 18 C 0.110 3.890 19 C -0.085 4.085 20 C -0.086 4.086 21 C -0.113 4.113 22 C -0.107 4.107 23 C -0.108 4.108 24 C -0.031 4.031 25 Cl -0.064 7.064 26 H 0.260 0.740 27 H 0.024 0.976 28 H 0.025 0.975 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.409 0.591 32 H 0.111 0.889 33 H 0.111 0.889 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.145 0.855 37 H 0.133 0.867 38 H 0.134 0.866 39 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.786 -33.460 -0.007 33.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.565 4.565 8 H 0.075 0.925 9 C -0.002 4.002 10 C -0.168 4.168 11 C 0.305 3.695 12 O -0.406 6.406 13 N -0.398 5.398 14 C 0.003 3.997 15 C 0.306 3.694 16 O -0.386 6.386 17 O -0.266 6.266 18 C 0.036 3.964 19 C -0.086 4.086 20 C -0.104 4.104 21 C -0.131 4.131 22 C -0.125 4.125 23 C -0.127 4.127 24 C -0.058 4.058 25 Cl -0.035 7.035 26 H 0.070 0.930 27 H 0.043 0.957 28 H 0.043 0.957 29 H 0.101 0.899 30 H 0.101 0.899 31 H 0.246 0.754 32 H 0.128 0.872 33 H 0.128 0.872 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.163 0.837 37 H 0.151 0.849 38 H 0.152 0.848 39 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 4.275 -33.298 -0.006 33.571 hybrid contribution 1.247 0.701 -0.001 1.430 sum 5.522 -32.597 -0.007 33.061 Atomic orbital electron populations 1.70009 1.06047 1.26485 1.50303 1.25026 0.94838 0.99261 0.95295 0.86524 0.80021 0.83780 0.77564 1.19740 1.21026 1.21031 1.21261 0.93035 0.90955 1.51260 0.92471 1.18928 0.93171 0.89329 0.98724 1.21885 1.00790 0.91207 1.02906 1.21654 0.88629 0.85136 0.74070 1.90686 1.14344 1.87479 1.48099 1.46120 1.11169 1.03863 1.78672 1.20584 0.92398 0.80455 1.06224 1.23744 0.89527 0.83848 0.72269 1.90693 1.17991 1.84894 1.45025 1.86398 1.40557 1.15432 1.84249 1.21728 0.88755 0.81754 1.04158 1.19405 0.94332 0.92260 1.02581 1.21104 0.92856 0.99038 0.97434 1.21357 1.00766 0.92117 0.98825 1.21214 0.93007 0.99192 0.99064 1.21032 0.95069 0.95998 1.00602 1.20639 0.84777 0.94297 1.06045 1.98397 1.09695 1.98657 1.96770 0.93005 0.95716 0.95707 0.89903 0.89909 0.75355 0.87170 0.87163 0.89022 0.89026 0.83726 0.84879 0.84842 0.84573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.29 13.29 55.43 0.74 -26.56 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 4 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 7 C -0.53 -14.90 9.11 -34.44 -0.31 -15.21 16 8 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 9 C 0.04 0.96 4.26 -27.88 -0.12 0.84 16 10 C -0.13 -2.57 5.64 -27.89 -0.16 -2.72 16 11 C 0.52 9.62 7.83 -10.98 -0.09 9.53 16 12 O -0.53 -11.89 15.98 5.56 0.09 -11.81 16 13 N -0.74 -10.42 5.53 -61.47 -0.34 -10.76 16 14 C 0.13 1.47 6.27 -5.19 -0.03 1.43 16 15 C 0.46 5.04 8.03 36.01 0.29 5.33 16 16 O -0.50 -6.52 15.42 -18.75 -0.29 -6.81 16 17 O -0.35 -3.29 8.69 -39.25 -0.34 -3.63 16 18 C 0.11 0.95 4.83 36.00 0.17 1.13 16 19 C -0.08 -0.68 5.88 -104.59 -0.62 -1.29 16 20 C -0.09 -0.61 9.38 -39.59 -0.37 -0.98 16 21 C -0.11 -0.63 10.05 -39.58 -0.40 -1.03 16 22 C -0.11 -0.54 10.05 -39.59 -0.40 -0.94 16 23 C -0.11 -0.65 9.83 -39.55 -0.39 -1.04 16 24 C -0.03 -0.23 6.31 -39.50 -0.25 -0.48 16 25 Cl -0.06 -0.49 27.99 -51.86 -1.45 -1.94 16 26 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 27 H 0.02 0.71 8.10 -51.93 -0.42 0.29 16 28 H 0.02 0.72 8.10 -51.93 -0.42 0.29 16 29 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 31 H 0.41 5.26 7.44 -40.82 -0.30 4.95 16 32 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.11 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 35 H 0.09 0.80 8.13 -51.93 -0.42 0.38 16 36 H 0.15 0.95 6.99 -52.49 -0.37 0.59 16 37 H 0.13 0.47 8.06 -52.49 -0.42 0.05 16 38 H 0.13 0.36 8.06 -52.48 -0.42 -0.06 16 39 H 0.14 0.58 8.06 -52.49 -0.42 0.16 16 LS Contribution 360.35 15.07 5.43 5.43 Total: -1.00 -34.36 360.35 -8.81 -43.17 By element: Atomic # 1 Polarization: 4.99 SS G_CDS: -4.86 Total: 0.13 kcal Atomic # 6 Polarization: -1.11 SS G_CDS: -2.76 Total: -3.87 kcal Atomic # 7 Polarization: -37.72 SS G_CDS: 0.40 Total: -37.32 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -0.54 Total: -22.24 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.45 Total: -1.94 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -34.36 -8.81 -43.17 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291639555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.938 kcal (2) G-P(sol) polarization free energy of solvation -34.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds