Wall clock time and date at job start Tue Mar 31 2020 14:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00036 * 2 1 4 4 H 1.48497 * 109.46993 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.46724 * 299.99545 * 3 2 1 6 6 H 1.48499 * 109.46948 * 59.99801 * 3 2 1 7 7 C 1.37875 * 119.99780 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00305 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00360 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47440 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47101 * 180.02562 * 10 9 7 12 12 O 1.21278 * 120.00285 * 359.97438 * 11 10 9 13 13 N 1.34783 * 120.00020 * 180.02562 * 11 10 9 14 14 C 1.46500 * 119.99819 * 179.97438 * 13 11 10 15 15 C 1.50703 * 109.46849 * 179.97438 * 14 13 11 16 16 O 1.20829 * 119.99937 * 359.97438 * 15 14 13 17 17 O 1.34226 * 119.99841 * 179.97438 * 15 14 13 18 18 C 1.45201 * 116.99677 * 179.97438 * 17 15 14 19 19 C 1.50699 * 109.47197 * 180.02562 * 18 17 15 20 20 C 1.38237 * 120.00455 * 0.02562 * 19 18 17 21 21 C 1.38224 * 120.01313 * 179.74163 * 20 19 18 22 22 C 1.38264 * 120.02445 * 0.26351 * 21 20 19 23 23 C 1.38190 * 120.01695 * 0.02562 * 22 21 20 24 24 C 1.38328 * 120.01174 * 180.27757 * 19 18 17 25 25 Cl 1.73603 * 120.01189 * 0.02562 * 24 19 18 26 26 H 0.97004 * 120.00021 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.46735 * 59.99644 * 9 7 2 28 28 H 1.08999 * 109.47055 * 300.00609 * 9 7 2 29 29 H 1.08991 * 109.46990 * 60.00286 * 10 9 7 30 30 H 1.09004 * 109.46954 * 300.00203 * 10 9 7 31 31 H 0.96996 * 119.99425 * 359.97438 * 13 11 10 32 32 H 1.08999 * 109.47185 * 59.99970 * 14 13 11 33 33 H 1.08996 * 109.47364 * 299.99524 * 14 13 11 34 34 H 1.09001 * 109.47024 * 60.00459 * 18 17 15 35 35 H 1.08995 * 109.47608 * 300.00057 * 18 17 15 36 36 H 1.08002 * 119.99593 * 0.02780 * 20 19 18 37 37 H 1.07996 * 119.98813 * 180.23496 * 21 20 19 38 38 H 1.08004 * 119.98845 * 179.97438 * 22 21 20 39 39 H 1.08000 * 120.00844 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3463 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4917 -4.9672 -0.0001 12 8 0.2789 -4.9672 0.0000 13 7 2.1656 -6.1344 0.0003 14 6 1.4330 -7.4031 0.0003 15 6 2.4123 -8.5486 0.0001 16 8 3.6002 -8.3278 -0.0004 17 8 1.9648 -9.8141 0.0006 18 6 2.9648 -10.8668 -0.0001 19 6 2.2807 -12.2096 -0.0001 20 6 0.9002 -12.2820 0.0000 21 6 0.2725 -13.5135 -0.0054 22 6 1.0249 -14.6735 -0.0054 23 6 2.4050 -14.6024 0.0005 24 6 3.0338 -13.3698 0.0050 25 17 4.7675 -13.2796 0.0122 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5571 -0.8897 28 1 0.6239 -2.5567 0.8902 29 1 2.8718 -3.6044 0.8905 30 1 2.8719 -3.6043 -0.8895 31 1 3.1355 -6.1344 0.0006 32 1 0.8066 -7.4610 -0.8899 33 1 0.8061 -7.4607 0.8900 34 1 3.5882 -10.7763 0.8894 35 1 3.5869 -10.7765 -0.8906 36 1 0.3120 -11.3763 -0.0004 37 1 -0.8060 -13.5697 -0.0091 38 1 0.5338 -15.6355 -0.0092 39 1 2.9925 -15.5086 0.0001 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291639555.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:30:26 Heat of formation + Delta-G solvation = -135.069647 kcal Electronic energy + Delta-G solvation = -23186.413459 eV Core-core repulsion = 19311.767552 eV Total energy + Delta-G solvation = -3874.645907 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.95910 -40.69101 -40.23669 -37.93352 -37.50192 -35.75271 -35.45501 -33.39556 -33.02168 -31.73447 -30.02537 -27.87998 -26.99594 -24.08553 -23.56147 -22.64005 -21.99736 -21.39385 -19.17652 -18.65396 -18.49215 -18.02931 -17.76584 -17.14564 -16.66357 -16.61563 -16.40154 -16.25971 -15.78435 -15.58718 -14.84560 -14.79017 -14.66710 -14.38843 -14.17076 -14.05644 -13.56575 -13.53686 -13.21426 -12.83285 -12.71025 -12.56539 -12.44750 -12.29440 -12.13436 -11.91126 -11.90706 -11.78905 -11.62902 -11.27223 -10.86897 -10.56324 -10.28505 -9.92831 -9.72883 -8.16825 -6.30041 0.06488 0.23683 0.89030 1.03414 1.09744 1.43768 1.44549 1.57963 1.63989 2.25808 2.45781 2.59018 3.16506 3.23420 3.50688 3.87401 3.97770 4.01237 4.06935 4.15758 4.19767 4.33208 4.35382 4.45381 4.53835 4.57114 4.63897 4.91592 4.98590 5.07008 5.18986 5.24093 5.35996 5.47528 5.52712 5.66042 5.80564 5.87523 6.19759 6.38214 6.46225 6.88225 7.21498 7.39934 8.95853 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.033638 B = 0.001734 C = 0.001652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.188309 B =16145.235089 C =16946.365287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.006 4.006 3 Si 0.972 3.028 4 H -0.255 1.255 5 H -0.280 1.280 6 H -0.281 1.281 7 C -0.543 4.543 8 H 0.074 0.926 9 C 0.041 3.959 10 C -0.120 4.120 11 C 0.523 3.477 12 O -0.576 6.576 13 N -0.720 5.720 14 C 0.126 3.874 15 C 0.475 3.525 16 O -0.521 6.521 17 O -0.342 6.342 18 C 0.111 3.889 19 C -0.101 4.101 20 C -0.099 4.099 21 C -0.113 4.113 22 C -0.103 4.103 23 C -0.113 4.113 24 C -0.044 4.044 25 Cl -0.073 7.073 26 H 0.263 0.737 27 H -0.013 1.013 28 H -0.013 1.013 29 H 0.105 0.895 30 H 0.105 0.895 31 H 0.419 0.581 32 H 0.122 0.878 33 H 0.123 0.877 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.162 0.838 39 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.931 -34.760 -0.010 35.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.204 4.204 3 Si 0.796 3.204 4 H -0.179 1.179 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.581 4.581 8 H 0.092 0.908 9 C 0.003 3.997 10 C -0.160 4.160 11 C 0.312 3.688 12 O -0.455 6.455 13 N -0.378 5.378 14 C 0.002 3.998 15 C 0.319 3.681 16 O -0.410 6.410 17 O -0.258 6.258 18 C 0.037 3.963 19 C -0.102 4.102 20 C -0.117 4.117 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.131 4.131 24 C -0.070 4.070 25 Cl -0.044 7.044 26 H 0.071 0.929 27 H 0.005 0.995 28 H 0.005 0.995 29 H 0.123 0.877 30 H 0.123 0.877 31 H 0.257 0.743 32 H 0.140 0.860 33 H 0.140 0.860 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.163 0.837 37 H 0.173 0.827 38 H 0.180 0.820 39 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 5.466 -34.654 -0.010 35.082 hybrid contribution 0.844 0.958 0.000 1.276 sum 6.310 -33.696 -0.009 34.282 Atomic orbital electron populations 1.70172 1.08167 1.27707 1.51547 1.26097 0.95737 1.03799 0.94718 0.85293 0.79243 0.78278 0.77540 1.17854 1.20633 1.20644 1.21753 0.94007 0.91717 1.50629 0.90761 1.18715 0.93698 0.92139 0.95123 1.21652 0.99469 0.89805 1.05048 1.21227 0.87776 0.85930 0.73910 1.90677 1.16072 1.88112 1.50598 1.45772 1.11608 1.03744 1.76648 1.20723 0.92357 0.79258 1.07464 1.23490 0.88826 0.84166 0.71635 1.90692 1.18786 1.85238 1.46253 1.86389 1.40663 1.14975 1.83749 1.21774 0.88636 0.81950 1.03914 1.19411 0.94871 0.91824 1.04074 1.21238 0.92542 0.99945 0.97986 1.21666 1.02023 0.91639 0.97764 1.21583 0.92631 1.00316 0.97513 1.21323 0.95820 0.95971 0.99991 1.20787 0.84421 0.94846 1.06959 1.98390 1.10430 1.98698 1.96870 0.92856 0.99468 0.99459 0.87701 0.87708 0.74250 0.85989 0.85983 0.89334 0.89328 0.83692 0.82707 0.82042 0.82996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.89 13.29 21.45 0.28 -58.61 16 2 C -0.01 -0.35 5.46 84.65 0.46 0.11 16 3 Si 0.97 44.33 29.54 68.60 2.03 46.36 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 5 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 6 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 7 C -0.54 -30.80 9.11 25.60 0.23 -30.56 16 8 H 0.07 3.86 7.74 -2.91 -0.02 3.84 16 9 C 0.04 2.24 4.26 29.85 0.13 2.37 16 10 C -0.12 -4.75 5.64 29.85 0.17 -4.58 16 11 C 0.52 19.33 7.83 87.65 0.69 20.02 16 12 O -0.58 -26.32 15.98 -3.02 -0.05 -26.37 16 13 N -0.72 -19.36 5.53 -466.79 -2.58 -21.94 16 14 C 0.13 2.72 6.27 85.63 0.54 3.26 16 15 C 0.48 9.79 8.03 71.24 0.57 10.36 16 16 O -0.52 -13.05 15.42 21.95 0.34 -12.71 16 17 O -0.34 -6.12 8.69 -51.38 -0.45 -6.57 16 18 C 0.11 1.88 4.83 71.24 0.34 2.23 16 19 C -0.10 -1.55 5.88 -19.84 -0.12 -1.66 16 20 C -0.10 -1.29 9.38 22.27 0.21 -1.08 16 21 C -0.11 -1.02 10.05 22.27 0.22 -0.80 16 22 C -0.10 -0.78 10.05 22.26 0.22 -0.56 16 23 C -0.11 -1.15 9.83 22.29 0.22 -0.94 16 24 C -0.04 -0.62 6.31 22.32 0.14 -0.48 16 25 Cl -0.07 -1.09 27.99 -2.72 -0.08 -1.17 16 26 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 27 H -0.01 -0.81 8.10 -2.38 -0.02 -0.83 16 28 H -0.01 -0.80 8.10 -2.39 -0.02 -0.82 16 29 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 30 H 0.10 3.68 8.14 -2.38 -0.02 3.66 16 31 H 0.42 9.97 7.44 -92.71 -0.69 9.28 16 32 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 33 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 34 H 0.09 1.54 8.13 -2.39 -0.02 1.52 16 35 H 0.09 1.54 8.13 -2.39 -0.02 1.52 16 36 H 0.15 1.78 6.99 -2.91 -0.02 1.76 16 37 H 0.16 0.67 8.06 -2.91 -0.02 0.64 16 38 H 0.16 0.30 8.06 -2.91 -0.02 0.27 16 39 H 0.15 1.00 8.06 -2.91 -0.02 0.97 16 Total: -1.00 -76.02 360.35 3.92 -72.10 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: 0.39 Total: 11.23 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: 4.03 Total: -2.31 kcal Atomic # 7 Polarization: -78.25 SS G_CDS: -2.30 Total: -80.55 kcal Atomic # 8 Polarization: -45.50 SS G_CDS: -0.16 Total: -45.66 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -76.02 3.92 -72.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291639555.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.973 kcal (2) G-P(sol) polarization free energy of solvation -76.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds