Wall clock time and date at job start Tue Mar 31 2020 14:04:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30830 * 1 3 3 Si 1.86796 * 120.00171 * 2 1 4 4 H 1.48504 * 109.47187 * 239.99967 * 3 2 1 5 5 H 1.48501 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47354 * 120.00168 * 3 2 1 7 7 C 1.39942 * 119.99809 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99914 * 162.65406 * 7 2 1 9 9 C 1.41429 * 120.00072 * 342.65764 * 7 2 1 10 10 C 1.40789 * 120.18113 * 154.89039 * 9 7 2 11 11 C 1.37708 * 120.04327 * 180.02562 * 10 9 7 12 12 C 1.38375 * 120.41289 * 359.97438 * 11 10 9 13 13 C 1.39883 * 120.35765 * 0.02562 * 12 11 10 14 14 C 1.47879 * 120.02674 * 179.70397 * 13 12 11 15 15 O 1.21546 * 120.00526 * 180.02562 * 14 13 12 16 16 N 1.34783 * 119.99911 * 359.97438 * 14 13 12 17 17 C 1.46502 * 120.00207 * 179.97438 * 16 14 13 18 18 H 1.09009 * 109.25589 * 33.05552 * 17 16 14 19 19 C 1.54132 * 109.27274 * 273.55136 * 17 16 14 20 20 S 1.83298 * 101.08503 * 211.54479 * 19 17 16 21 21 C 1.77436 * 96.59632 * 24.88689 * 20 19 17 22 22 C 1.38826 * 130.57388 * 164.56727 * 21 20 19 23 23 C 1.38022 * 120.16218 * 180.25647 * 22 21 20 24 24 C 1.38326 * 119.28860 * 359.94133 * 23 22 21 25 25 C 1.37699 * 120.54809 * 359.94078 * 24 23 22 26 26 C 1.38885 * 108.27604 * 344.55920 * 21 20 19 27 27 C 1.39030 * 119.94717 * 359.97438 * 13 12 11 28 28 H 0.97002 * 119.99846 * 0.02562 * 1 2 3 29 29 H 1.08000 * 119.96996 * 0.02562 * 10 9 7 30 30 H 1.07995 * 119.79198 * 179.97438 * 11 10 9 31 31 H 1.07995 * 119.82076 * 180.02562 * 12 11 10 32 32 H 0.97004 * 120.00093 * 0.02562 * 16 14 13 33 33 H 1.08998 * 111.10074 * 329.50156 * 19 17 16 34 34 H 1.09000 * 111.09699 * 93.55232 * 19 17 16 35 35 H 1.08002 * 119.91464 * 0.20227 * 22 21 20 36 36 H 1.07997 * 120.35581 * 179.97438 * 23 22 21 37 37 H 1.08003 * 119.72679 * 179.91125 * 24 23 22 38 38 H 1.07995 * 119.47677 * 179.97438 * 25 24 23 39 39 H 1.08008 * 120.20219 * 179.97438 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6963 -1.2125 5 1 1.2773 2.7464 -0.0006 6 1 3.0961 1.6963 1.2124 7 6 2.0080 -1.2120 0.0005 8 1 3.0512 -1.2334 -0.2783 9 6 1.3490 -2.4088 0.3662 10 6 1.8186 -3.6485 -0.1078 11 6 1.1745 -4.8120 0.2496 12 6 0.0646 -4.7731 1.0750 13 6 -0.4165 -3.5508 1.5557 14 6 -1.6072 -3.5172 2.4320 15 8 -2.0251 -2.4547 2.8491 16 7 -2.2296 -4.6646 2.7675 17 6 -3.4089 -4.6315 3.6361 18 1 -3.9700 -3.7165 3.4457 19 6 -2.9563 -4.6534 5.1093 20 16 -4.3474 -5.5546 5.8920 21 6 -4.8676 -6.4287 4.4381 22 6 -5.7013 -7.5297 4.2964 23 6 -5.9605 -8.0465 3.0431 24 6 -5.3823 -7.4550 1.9343 25 6 -4.5574 -6.3614 2.0748 26 6 -4.2840 -5.8225 3.3332 27 6 0.2223 -2.3670 1.2043 28 1 -0.4850 0.8401 -0.0004 29 1 2.6845 -3.6869 -0.7520 30 1 1.5379 -5.7608 -0.1167 31 1 -0.4330 -5.6915 1.3495 32 1 -1.8964 -5.5125 2.4344 33 1 -2.0204 -5.2001 5.2243 34 1 -2.8690 -3.6427 5.5080 35 1 -6.1473 -7.9835 5.1690 36 1 -6.6082 -8.9031 2.9292 37 1 -5.5792 -7.8544 0.9504 38 1 -4.1148 -5.9134 1.1974 39 1 -0.1459 -1.4208 1.5727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336522532.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:04:40 Heat of formation + Delta-G solvation = 10.998562 kcal Electronic energy + Delta-G solvation = -23696.683101 eV Core-core repulsion = 20273.556907 eV Total energy + Delta-G solvation = -3423.126194 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.07366 -38.94090 -37.15655 -35.48086 -33.81190 -32.18679 -31.02665 -30.14175 -29.51664 -29.08659 -25.42452 -24.46628 -23.04038 -22.47362 -21.17622 -20.77987 -19.74456 -18.20222 -17.68284 -16.44859 -16.09539 -15.58506 -15.49895 -15.20150 -14.97598 -14.61527 -14.33684 -14.02601 -13.76912 -13.44291 -13.21200 -13.16395 -12.76028 -12.59195 -12.55310 -12.19822 -11.79454 -11.66270 -11.32573 -11.20637 -11.12770 -10.80915 -10.55637 -10.49797 -10.12121 -9.92995 -9.75832 -9.31610 -9.26012 -9.06313 -8.83598 -7.71356 -7.60013 -7.58038 -6.84899 -4.46853 0.88896 1.07883 1.39521 2.01387 2.13654 2.76945 3.04754 3.06246 3.12582 3.31293 3.62792 3.74435 3.88217 4.13530 4.51061 4.62047 4.68995 4.83929 4.94634 5.09400 5.25110 5.37049 5.47850 5.53873 5.59365 5.72386 5.80929 5.98936 6.02907 6.10658 6.20630 6.25366 6.59924 6.64293 6.65735 6.92046 6.94624 7.15264 7.31315 7.61944 7.67397 7.84568 7.96993 8.11774 8.44165 8.73490 8.76556 8.79952 10.09859 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019969 B = 0.002958 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1401.854592 B = 9462.451345 C =10107.708455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.783 5.783 2 C 0.073 3.927 3 Si 0.911 3.089 4 H -0.265 1.265 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.460 4.460 8 H 0.081 0.919 9 C 0.099 3.901 10 C -0.210 4.210 11 C -0.097 4.097 12 C -0.218 4.218 13 C -0.128 4.128 14 C 0.567 3.433 15 O -0.541 6.541 16 N -0.728 5.728 17 C 0.185 3.815 18 H 0.115 0.885 19 C -0.091 4.091 20 S -0.147 6.147 21 C -0.070 4.070 22 C -0.091 4.091 23 C -0.099 4.099 24 C -0.121 4.121 25 C -0.080 4.080 26 C -0.115 4.115 27 C -0.090 4.090 28 H 0.285 0.715 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.403 0.597 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.128 0.872 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.296 -12.452 5.847 16.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.407 5.407 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.187 1.187 7 C -0.489 4.489 8 H 0.099 0.901 9 C 0.097 3.903 10 C -0.230 4.230 11 C -0.115 4.115 12 C -0.239 4.239 13 C -0.132 4.132 14 C 0.358 3.642 15 O -0.418 6.418 16 N -0.382 5.382 17 C 0.079 3.921 18 H 0.133 0.867 19 C -0.240 4.240 20 S 0.095 5.905 21 C -0.183 4.183 22 C -0.115 4.115 23 C -0.119 4.119 24 C -0.141 4.141 25 C -0.100 4.100 26 C -0.121 4.121 27 C -0.111 4.111 28 H 0.097 0.903 29 H 0.114 0.886 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.239 0.761 33 H 0.123 0.877 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.146 0.854 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -10.170 -11.389 7.427 16.980 hybrid contribution 0.854 0.227 -1.492 1.734 sum -9.316 -11.162 5.936 15.704 Atomic orbital electron populations 1.69774 1.07573 1.29943 1.33453 1.25968 0.94792 1.01569 0.92272 0.86311 0.80111 0.80035 0.80009 1.18944 1.20190 1.18695 1.19568 0.98052 0.90998 1.40233 0.90064 1.17594 0.91175 0.92472 0.89103 1.21118 1.03471 0.92804 1.05620 1.20433 0.95992 0.96764 0.98306 1.20327 1.01469 0.94571 1.07493 1.19398 0.96411 0.95417 1.01949 1.18947 0.83306 0.82596 0.79349 1.90707 1.66190 1.29953 1.54973 1.46087 1.29776 1.10396 1.51974 1.20164 0.86436 0.97482 0.88038 0.86739 1.24925 0.98719 1.04297 0.96095 1.86091 1.38020 1.51954 1.14429 1.21980 1.01967 0.98658 0.95691 1.20409 0.98476 0.94484 0.98133 1.21133 0.99257 0.99631 0.91911 1.21015 0.97616 0.96264 0.99207 1.20919 0.97326 0.95659 0.96088 1.20847 1.00381 0.96839 0.94061 1.21636 0.96421 0.96341 0.96655 0.90336 0.88564 0.88862 0.89302 0.76101 0.87695 0.85966 0.85458 0.85066 0.85338 0.85395 0.84830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -20.35 10.97 55.55 0.61 -19.74 16 2 C 0.07 1.82 5.14 -17.34 -0.09 1.73 16 3 Si 0.91 18.48 29.59 -169.99 -5.03 13.45 16 4 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 5 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.46 -11.83 9.05 -37.73 -0.34 -12.18 16 8 H 0.08 1.98 7.90 -52.48 -0.41 1.57 16 9 C 0.10 2.56 5.57 -106.87 -0.59 1.96 16 10 C -0.21 -4.87 9.78 -38.81 -0.38 -5.24 16 11 C -0.10 -2.00 10.01 -39.72 -0.40 -2.40 16 12 C -0.22 -4.42 9.55 -38.92 -0.37 -4.79 16 13 C -0.13 -2.91 5.87 -105.04 -0.62 -3.53 16 14 C 0.57 11.72 7.75 -12.31 -0.10 11.62 16 15 O -0.54 -12.81 15.96 5.33 0.08 -12.72 16 16 N -0.73 -11.50 4.77 -55.20 -0.26 -11.76 16 17 C 0.19 2.64 2.89 -68.41 -0.20 2.44 16 18 H 0.11 1.83 7.50 -51.92 -0.39 1.45 16 19 C -0.09 -1.18 7.22 37.75 0.27 -0.91 16 20 S -0.15 -1.81 23.08 -107.50 -2.48 -4.29 16 21 C -0.07 -0.85 6.48 -39.12 -0.25 -1.11 16 22 C -0.09 -0.93 10.05 -39.44 -0.40 -1.32 16 23 C -0.10 -0.87 10.08 -39.63 -0.40 -1.27 16 24 C -0.12 -1.15 10.00 -39.75 -0.40 -1.54 16 25 C -0.08 -0.92 9.59 -39.27 -0.38 -1.30 16 26 C -0.12 -1.48 5.59 -103.79 -0.58 -2.06 16 27 C -0.09 -2.34 8.23 -38.44 -0.32 -2.66 16 28 H 0.29 6.85 8.30 -40.82 -0.34 6.51 16 29 H 0.10 2.07 8.06 -52.49 -0.42 1.65 16 30 H 0.09 1.63 8.06 -52.49 -0.42 1.21 16 31 H 0.09 1.48 6.38 -52.49 -0.33 1.15 16 32 H 0.40 5.67 6.52 -40.82 -0.27 5.41 16 33 H 0.10 1.31 8.10 -51.93 -0.42 0.89 16 34 H 0.12 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.13 1.06 8.06 -52.49 -0.42 0.64 16 36 H 0.13 0.78 8.06 -52.49 -0.42 0.35 16 37 H 0.13 0.93 8.06 -52.48 -0.42 0.50 16 38 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 39 H 0.13 3.75 5.77 -52.48 -0.30 3.45 16 LS Contribution 345.50 15.07 5.21 5.21 Total: -1.00 -28.62 345.50 -11.63 -40.25 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: -4.22 Total: 12.14 kcal Atomic # 6 Polarization: -17.01 SS G_CDS: -5.53 Total: -22.54 kcal Atomic # 7 Polarization: -31.84 SS G_CDS: 0.35 Total: -31.50 kcal Atomic # 8 Polarization: -12.81 SS G_CDS: 0.08 Total: -12.72 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: -1.81 SS G_CDS: -2.48 Total: -4.29 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -28.62 -11.63 -40.25 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336522532.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.248 kcal (2) G-P(sol) polarization free energy of solvation -28.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds