Wall clock time and date at job start Tue Mar 31 2020 14:41:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99941 * 2 1 4 4 H 1.48504 * 109.46811 * 269.99687 * 3 2 1 5 5 H 1.48499 * 109.47044 * 29.99721 * 3 2 1 6 6 H 1.48502 * 109.47281 * 149.99887 * 3 2 1 7 7 C 1.37877 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00232 * 0.02562 * 7 2 1 9 9 C 1.50708 * 120.00058 * 179.97438 * 7 2 1 10 10 C 1.52989 * 109.47200 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.34786 * 120.00190 * 179.97438 * 11 10 9 13 13 O 1.21351 * 119.99542 * 359.97438 * 12 11 10 14 14 C 1.49353 * 119.99852 * 180.02562 * 12 11 10 15 15 O 1.21372 * 120.00153 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99648 * 180.02562 * 14 12 11 17 17 C 1.39715 * 119.99911 * 184.62116 * 16 14 12 18 18 C 1.38917 * 120.06385 * 324.91639 * 17 16 14 19 19 C 1.38294 * 119.89575 * 179.97438 * 18 17 16 20 20 F 1.35103 * 119.98301 * 179.97438 * 19 18 17 21 21 C 1.38541 * 120.03111 * 359.97438 * 19 18 17 22 22 C 1.38240 * 120.12564 * 0.04486 * 21 19 18 23 23 N 1.48013 * 119.95228 * 179.97438 * 22 21 19 24 24 O 1.21796 * 119.99955 * 179.97438 * 23 22 21 25 25 O 1.21805 * 119.99693 * 359.97436 * 23 22 21 26 26 C 1.38126 * 120.09717 * 359.95618 * 22 21 19 27 27 H 0.96993 * 120.00185 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.46452 * 60.00024 * 9 7 2 29 29 H 1.08999 * 109.47116 * 300.00706 * 9 7 2 30 30 H 1.08993 * 109.47647 * 60.00433 * 10 9 7 31 31 H 1.08999 * 109.47273 * 300.00132 * 10 9 7 32 32 H 0.96997 * 119.99953 * 359.97438 * 11 10 9 33 33 H 0.97003 * 119.99781 * 4.62635 * 16 14 12 34 34 H 1.07997 * 120.04835 * 359.69958 * 18 17 16 35 35 H 1.08003 * 119.93854 * 180.02562 * 21 19 18 36 36 H 1.08003 * 120.01102 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1605 -3.8037 0.0008 13 8 5.5537 -4.8546 0.0018 14 6 7.6540 -3.8036 0.0014 15 8 8.2609 -2.7525 0.0009 16 7 8.3279 -4.9708 0.0015 17 6 9.7216 -4.9728 0.0996 18 6 10.4629 -3.9628 -0.5006 19 6 11.8423 -3.9679 -0.4009 20 9 12.5650 -2.9867 -0.9843 21 6 12.4833 -4.9785 0.2970 22 6 11.7467 -5.9844 0.8943 23 7 12.4355 -7.0626 1.6385 24 8 11.7874 -7.9489 2.1654 25 8 13.6506 -7.0634 1.7238 26 6 10.3688 -5.9845 0.7980 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6580 -3.1505 -0.8896 31 1 3.6586 -3.1501 0.8903 32 1 5.9715 -1.7964 -0.0003 33 1 7.8453 -5.8095 -0.0666 34 1 9.9631 -3.1773 -1.0479 35 1 13.5605 -4.9808 0.3743 36 1 9.7947 -6.7707 1.2655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351577428.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:17 Heat of formation + Delta-G solvation = -83.195859 kcal Electronic energy + Delta-G solvation = -25678.641493 eV Core-core repulsion = 21274.368284 eV Total energy + Delta-G solvation = -4404.273209 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.095 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.72120 -42.71251 -41.58975 -39.85493 -38.59517 -37.06539 -36.07692 -35.15788 -32.96324 -32.31872 -30.91000 -30.45097 -27.32328 -26.50680 -24.59396 -23.49775 -22.75447 -21.10997 -20.88701 -20.05652 -19.30036 -18.81320 -18.04583 -17.72013 -17.36982 -17.13092 -17.06591 -16.76756 -16.36926 -16.20804 -15.98567 -15.26710 -14.73931 -14.29231 -14.26535 -14.01306 -13.64148 -13.33759 -13.21576 -12.99515 -12.72204 -12.06062 -11.98985 -11.75893 -11.65534 -11.60017 -11.45886 -11.38330 -10.58430 -10.50033 -10.09776 -10.03613 -9.82114 -9.46842 -9.33146 -9.03632 -8.71668 -6.21578 -4.23290 -0.82447 -0.06928 0.67061 0.70462 1.07156 1.79175 2.39777 2.89106 3.10947 3.18435 3.27044 3.27166 3.27681 3.83872 3.88241 3.97633 4.03062 4.26381 4.28525 4.44601 4.78463 4.99684 5.10728 5.11124 5.27948 5.65054 5.76259 5.86386 5.92578 6.18642 6.30341 6.31418 6.84791 7.02397 7.04147 7.11447 7.37510 7.51420 7.85107 8.30790 8.81024 9.37707 10.91005 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.002163 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.261983 B =12942.448651 C =13801.651030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.527 4.527 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.126 3.874 11 N -0.684 5.684 12 C 0.503 3.497 13 O -0.519 6.519 14 C 0.514 3.486 15 O -0.493 6.493 16 N -0.647 5.647 17 C 0.185 3.815 18 C -0.110 4.110 19 C 0.132 3.868 20 F -0.115 7.115 21 C -0.110 4.110 22 C 0.004 3.996 23 N 0.028 4.972 24 O -0.145 6.145 25 O -0.149 6.149 26 C -0.090 4.090 27 H 0.266 0.734 28 H 0.025 0.975 29 H 0.021 0.979 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.410 0.590 33 H 0.434 0.566 34 H 0.173 0.827 35 H 0.169 0.831 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.194 -10.406 -0.842 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.190 1.190 7 C -0.565 4.565 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.335 5.335 12 C 0.281 3.719 13 O -0.396 6.396 14 C 0.297 3.703 15 O -0.365 6.365 16 N -0.295 5.295 17 C 0.088 3.912 18 C -0.131 4.131 19 C 0.111 3.889 20 F -0.093 7.093 21 C -0.130 4.130 22 C -0.079 4.079 23 N 0.550 4.450 24 O -0.363 6.363 25 O -0.366 6.366 26 C -0.112 4.112 27 H 0.076 0.924 28 H 0.043 0.957 29 H 0.039 0.961 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.246 0.754 33 H 0.274 0.726 34 H 0.190 0.810 35 H 0.186 0.814 36 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 24.571 -9.665 -1.218 26.432 hybrid contribution 0.657 0.852 0.060 1.078 sum 25.228 -8.813 -1.158 26.748 Atomic orbital electron populations 1.69888 1.06288 1.27241 1.49847 1.24989 0.94783 0.99194 0.94188 0.86769 0.80294 0.83509 0.78626 1.20130 1.21149 1.19013 1.20839 0.88283 0.95004 1.52393 0.90483 1.19833 0.98266 0.90721 0.97311 1.21815 0.73974 1.01203 1.02516 1.46248 1.09869 1.07719 1.69639 1.19467 0.86430 0.85722 0.80238 1.90803 1.68982 1.30803 1.48975 1.20880 0.89972 0.83352 0.76072 1.90784 1.69769 1.30866 1.45122 1.43160 1.03653 1.11400 1.71272 1.16959 0.83489 0.94953 0.95799 1.21761 0.92068 1.00553 0.98733 1.16896 0.88639 0.87166 0.96164 1.91622 1.77155 1.59052 1.81454 1.20891 1.03102 0.92192 0.96836 1.20299 0.92068 0.92179 1.03377 1.43409 1.01193 1.01078 0.99331 1.94585 1.66632 1.28930 1.46182 1.94577 0.95467 1.81981 1.64568 1.20766 0.92071 1.00786 0.97562 0.92395 0.95665 0.96107 0.90894 0.90886 0.75391 0.72636 0.80950 0.81366 0.81440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.26 13.96 55.43 0.77 -25.48 16 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 3 Si 0.88 20.25 27.47 -169.99 -4.67 15.58 16 4 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 6 H -0.27 -5.77 6.54 56.52 0.37 -5.40 16 7 C -0.53 -13.90 9.66 -34.44 -0.33 -14.24 16 8 H 0.08 2.19 7.99 -52.49 -0.42 1.78 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 10 C 0.13 2.24 5.61 -4.05 -0.02 2.22 16 11 N -0.68 -9.83 5.55 -60.77 -0.34 -10.17 16 12 C 0.50 6.65 7.89 -11.63 -0.09 6.56 16 13 O -0.52 -7.90 16.48 5.50 0.09 -7.81 16 14 C 0.51 5.46 7.73 -11.63 -0.09 5.37 16 15 O -0.49 -5.88 13.91 5.48 0.08 -5.80 16 16 N -0.65 -5.01 5.32 -10.30 -0.05 -5.07 16 17 C 0.18 1.35 6.30 -83.76 -0.53 0.82 16 18 C -0.11 -0.85 8.67 -39.31 -0.34 -1.19 16 19 C 0.13 0.96 7.30 -39.45 -0.29 0.67 16 20 F -0.11 -0.91 17.27 2.25 0.04 -0.87 16 21 C -0.11 -0.74 9.53 -39.47 -0.38 -1.12 16 22 C 0.00 0.03 6.85 -79.99 -0.55 -0.52 16 23 N 0.03 0.27 4.45 33.94 0.15 0.42 16 24 O -0.15 -1.51 18.44 -29.46 -0.54 -2.05 16 25 O -0.15 -1.53 18.44 -29.46 -0.54 -2.08 16 26 C -0.09 -0.60 9.47 -39.37 -0.37 -0.97 16 27 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 28 H 0.03 0.53 7.20 -51.92 -0.37 0.15 16 29 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 30 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.41 5.34 7.94 -40.82 -0.32 5.02 16 33 H 0.43 2.62 8.30 -40.82 -0.34 2.28 16 34 H 0.17 1.45 6.23 -52.49 -0.33 1.13 16 35 H 0.17 0.90 7.60 -52.48 -0.40 0.51 16 36 H 0.17 0.85 7.61 -52.48 -0.40 0.45 16 LS Contribution 335.70 15.07 5.06 5.06 Total: -1.00 -30.56 335.70 -6.15 -36.70 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.99 Total: 2.71 kcal Atomic # 6 Polarization: 2.06 SS G_CDS: -3.20 Total: -1.15 kcal Atomic # 7 Polarization: -40.84 SS G_CDS: 0.53 Total: -40.31 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.92 Total: -17.74 kcal Atomic # 9 Polarization: -0.91 SS G_CDS: 0.04 Total: -0.87 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.56 -6.15 -36.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351577428.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.491 kcal (2) G-P(sol) polarization free energy of solvation -30.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds