Wall clock time and date at job start Tue Mar 31 2020 14:41:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99941 * 2 1 4 4 H 1.48504 * 109.46811 * 269.99687 * 3 2 1 5 5 H 1.48499 * 109.47044 * 29.99721 * 3 2 1 6 6 H 1.48502 * 109.47281 * 149.99887 * 3 2 1 7 7 C 1.37877 * 120.00004 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00232 * 0.02562 * 7 2 1 9 9 C 1.50708 * 120.00058 * 179.97438 * 7 2 1 10 10 C 1.52989 * 109.47200 * 180.02562 * 9 7 2 11 11 N 1.46498 * 109.47136 * 180.02562 * 10 9 7 12 12 C 1.34786 * 120.00190 * 179.97438 * 11 10 9 13 13 O 1.21351 * 119.99542 * 359.97438 * 12 11 10 14 14 C 1.49353 * 119.99852 * 180.02562 * 12 11 10 15 15 O 1.21372 * 120.00153 * 359.97438 * 14 12 11 16 16 N 1.34777 * 119.99648 * 180.02562 * 14 12 11 17 17 C 1.39715 * 119.99911 * 184.62116 * 16 14 12 18 18 C 1.38917 * 120.06385 * 324.91639 * 17 16 14 19 19 C 1.38294 * 119.89575 * 179.97438 * 18 17 16 20 20 F 1.35103 * 119.98301 * 179.97438 * 19 18 17 21 21 C 1.38541 * 120.03111 * 359.97438 * 19 18 17 22 22 C 1.38240 * 120.12564 * 0.04486 * 21 19 18 23 23 N 1.48013 * 119.95228 * 179.97438 * 22 21 19 24 24 O 1.21796 * 119.99955 * 179.97438 * 23 22 21 25 25 O 1.21805 * 119.99693 * 359.97436 * 23 22 21 26 26 C 1.38126 * 120.09717 * 359.95618 * 22 21 19 27 27 H 0.96993 * 120.00185 * 0.02562 * 1 2 3 28 28 H 1.09007 * 109.46452 * 60.00024 * 9 7 2 29 29 H 1.08999 * 109.47116 * 300.00706 * 9 7 2 30 30 H 1.08993 * 109.47647 * 60.00433 * 10 9 7 31 31 H 1.08999 * 109.47273 * 300.00132 * 10 9 7 32 32 H 0.96997 * 119.99953 * 359.97438 * 11 10 9 33 33 H 0.97003 * 119.99781 * 4.62635 * 16 14 12 34 34 H 1.07997 * 120.04835 * 359.69958 * 18 17 16 35 35 H 1.08003 * 119.93854 * 180.02562 * 21 19 18 36 36 H 1.08003 * 120.01102 * 180.02562 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1941 0.0000 10 6 4.0216 -2.6365 0.0001 11 7 5.4865 -2.6365 0.0001 12 6 6.1605 -3.8037 0.0008 13 8 5.5537 -4.8546 0.0018 14 6 7.6540 -3.8036 0.0014 15 8 8.2609 -2.7525 0.0009 16 7 8.3279 -4.9708 0.0015 17 6 9.7216 -4.9728 0.0996 18 6 10.4629 -3.9628 -0.5006 19 6 11.8423 -3.9679 -0.4009 20 9 12.5650 -2.9867 -0.9843 21 6 12.4833 -4.9785 0.2970 22 6 11.7467 -5.9844 0.8943 23 7 12.4355 -7.0626 1.6385 24 8 11.7874 -7.9489 2.1654 25 8 13.6506 -7.0634 1.7238 26 6 10.3688 -5.9845 0.7980 27 1 -0.4850 0.8400 -0.0004 28 1 3.8752 -0.6796 0.8895 29 1 3.8746 -0.6807 -0.8904 30 1 3.6580 -3.1505 -0.8896 31 1 3.6586 -3.1501 0.8903 32 1 5.9715 -1.7964 -0.0003 33 1 7.8453 -5.8095 -0.0666 34 1 9.9631 -3.1773 -1.0479 35 1 13.5605 -4.9808 0.3743 36 1 9.7947 -6.7707 1.2655 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351577428.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:41:16 Heat of formation + Delta-G solvation = -104.021767 kcal Electronic energy + Delta-G solvation = -25679.544573 eV Core-core repulsion = 21274.368284 eV Total energy + Delta-G solvation = -4405.176289 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.095 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -50.31009 -43.41319 -42.41646 -40.73581 -39.49605 -37.80266 -37.12818 -36.24725 -34.81611 -32.94473 -32.17171 -31.51331 -28.00949 -27.82731 -25.85478 -24.11549 -23.64984 -22.67676 -21.83184 -20.73382 -20.15306 -19.71320 -19.04072 -18.74159 -18.39217 -17.99096 -17.74798 -17.67233 -17.07449 -16.97443 -16.90004 -16.39245 -16.22130 -15.85151 -15.24970 -14.92427 -14.72887 -14.60194 -14.14060 -13.81649 -13.62199 -13.40112 -13.08219 -12.93034 -12.79803 -12.51076 -12.37302 -12.24519 -12.21029 -12.13183 -11.78981 -11.51430 -10.96727 -10.79462 -10.61946 -10.30790 -9.94265 -8.30314 -6.37195 -1.49721 -0.67511 -0.05213 0.03201 0.21206 0.93524 1.39498 1.41335 1.51816 1.73128 1.98993 2.25824 2.35846 2.62175 3.05198 3.12332 3.27680 3.33043 3.40910 3.49114 3.87688 4.21025 4.24507 4.39070 4.45080 4.53199 4.62847 4.72426 4.92465 4.95682 5.20697 5.27589 5.37172 5.54568 5.60635 6.10493 6.20784 6.33604 6.39691 6.69686 6.77935 7.27565 8.85814 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.023678 B = 0.002163 C = 0.002028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.261983 B =12942.448651 C =13801.651030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.266 1.266 5 H -0.289 1.289 6 H -0.239 1.239 7 C -0.535 4.535 8 H 0.037 0.963 9 C -0.019 4.019 10 C 0.142 3.858 11 N -0.683 5.683 12 C 0.507 3.493 13 O -0.539 6.539 14 C 0.527 3.473 15 O -0.504 6.504 16 N -0.631 5.631 17 C 0.179 3.821 18 C -0.107 4.107 19 C 0.131 3.869 20 F -0.118 7.118 21 C -0.096 4.096 22 C -0.004 4.004 23 N 0.030 4.970 24 O -0.160 6.160 25 O -0.162 6.162 26 C -0.073 4.073 27 H 0.267 0.733 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.420 0.580 33 H 0.443 0.557 34 H 0.168 0.832 35 H 0.182 0.818 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.773 -9.854 -0.884 29.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.192 4.192 3 Si 0.775 3.225 4 H -0.191 1.191 5 H -0.215 1.215 6 H -0.162 1.162 7 C -0.574 4.574 8 H 0.055 0.945 9 C -0.056 4.056 10 C 0.019 3.981 11 N -0.335 5.335 12 C 0.287 3.713 13 O -0.417 6.417 14 C 0.309 3.691 15 O -0.378 6.378 16 N -0.279 5.279 17 C 0.083 3.917 18 C -0.128 4.128 19 C 0.110 3.890 20 F -0.097 7.097 21 C -0.116 4.116 22 C -0.088 4.088 23 N 0.549 4.451 24 O -0.376 6.376 25 O -0.378 6.378 26 C -0.094 4.094 27 H 0.076 0.924 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.080 0.920 32 H 0.257 0.743 33 H 0.285 0.715 34 H 0.186 0.814 35 H 0.200 0.800 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 27.208 -9.164 -1.254 28.738 hybrid contribution -0.148 0.568 0.052 0.589 sum 27.060 -8.596 -1.203 28.418 Atomic orbital electron populations 1.70055 1.08439 1.28352 1.51938 1.26008 0.95622 1.03638 0.93894 0.85634 0.79691 0.77898 0.79248 1.19136 1.21490 1.16170 1.21209 0.91297 0.93508 1.51350 0.94511 1.19705 0.94656 0.93019 0.98258 1.21317 0.76174 0.98939 1.01676 1.45960 1.08385 1.08804 1.70319 1.19804 0.87692 0.84803 0.78980 1.90800 1.69901 1.31458 1.49518 1.20153 0.88430 0.83977 0.76534 1.90797 1.69449 1.31421 1.46125 1.42942 1.03907 1.10890 1.70192 1.16857 0.82920 0.95341 0.96631 1.21779 0.92352 1.00339 0.98355 1.16811 0.88396 0.87285 0.96507 1.91618 1.77215 1.59254 1.81584 1.21011 1.03829 0.91289 0.95482 1.20288 0.92381 0.92048 1.04050 1.43609 1.01109 1.01246 0.99140 1.94580 1.66549 1.29660 1.46798 1.94572 0.95936 1.82283 1.65012 1.20863 0.91747 1.00504 0.96312 0.92375 0.94559 0.94606 0.91825 0.91956 0.74299 0.71531 0.81426 0.80018 0.79787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.14 13.96 21.45 0.30 -56.84 16 2 C 0.01 0.33 5.47 84.65 0.46 0.79 16 3 Si 0.95 40.96 27.47 68.60 1.88 42.85 16 4 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.24 -9.15 6.54 99.48 0.65 -8.50 16 7 C -0.54 -28.67 9.66 25.60 0.25 -28.42 16 8 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 9 C -0.02 -0.76 4.16 29.85 0.12 -0.63 16 10 C 0.14 4.94 5.61 86.38 0.48 5.43 16 11 N -0.68 -18.44 5.55 -464.53 -2.58 -21.02 16 12 C 0.51 12.56 7.89 87.24 0.69 13.24 16 13 O -0.54 -15.74 16.48 -3.25 -0.05 -15.79 16 14 C 0.53 10.01 7.73 87.24 0.67 10.68 16 15 O -0.50 -10.81 13.91 -3.31 -0.05 -10.86 16 16 N -0.63 -8.24 5.32 -304.86 -1.62 -9.86 16 17 C 0.18 2.16 6.30 38.21 0.24 2.40 16 18 C -0.11 -1.42 8.67 22.45 0.19 -1.22 16 19 C 0.13 1.61 7.30 22.36 0.16 1.77 16 20 F -0.12 -1.66 17.27 44.97 0.78 -0.88 16 21 C -0.10 -1.07 9.53 22.34 0.21 -0.86 16 22 C 0.00 -0.05 6.85 36.35 0.25 0.20 16 23 N 0.03 0.52 4.45 -46.53 -0.21 0.32 16 24 O -0.16 -3.09 18.44 18.89 0.35 -2.75 16 25 O -0.16 -3.14 18.44 18.88 0.35 -2.80 16 26 C -0.07 -0.78 9.47 22.41 0.21 -0.56 16 27 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 28 H 0.04 1.42 7.20 -2.38 -0.02 1.40 16 29 H 0.04 1.37 7.57 -2.39 -0.02 1.35 16 30 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.42 9.89 7.94 -92.71 -0.74 9.15 16 33 H 0.44 4.27 8.30 -92.71 -0.77 3.50 16 34 H 0.17 2.47 6.23 -2.91 -0.02 2.46 16 35 H 0.18 1.53 7.60 -2.91 -0.02 1.51 16 36 H 0.18 1.34 7.61 -2.91 -0.02 1.32 16 Total: -1.00 -66.44 335.70 2.73 -63.71 By element: Atomic # 1 Polarization: 11.50 SS G_CDS: -0.37 Total: 11.13 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: 3.95 Total: 2.81 kcal Atomic # 7 Polarization: -83.31 SS G_CDS: -4.11 Total: -87.41 kcal Atomic # 8 Polarization: -32.79 SS G_CDS: 0.60 Total: -32.19 kcal Atomic # 9 Polarization: -1.66 SS G_CDS: 0.78 Total: -0.88 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 1.88 Total: 42.85 kcal Total: -66.44 2.73 -63.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351577428.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.315 kcal (2) G-P(sol) polarization free energy of solvation -66.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds