Wall clock time and date at job start Tue Mar 31 2020 13:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46899 * 111.00118 * 2 1 4 4 C 1.53002 * 109.47100 * 293.95847 * 3 2 1 5 5 C 1.53003 * 109.46973 * 179.97438 * 4 3 2 6 6 C 1.50695 * 109.47077 * 179.97438 * 5 4 3 7 7 H 1.07998 * 120.00212 * 359.97438 * 6 5 4 8 8 C 1.37878 * 120.00006 * 180.02562 * 6 5 4 9 9 N 1.31512 * 119.99828 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00019 * 180.02562 * 8 6 5 11 11 H 1.48498 * 109.47216 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47621 * 119.99650 * 10 8 6 13 13 H 1.48507 * 109.47046 * 239.99825 * 10 8 6 14 14 C 1.46893 * 111.00017 * 123.95690 * 2 1 3 15 15 C 1.53002 * 109.47075 * 66.04377 * 14 2 1 16 16 C 1.50707 * 109.47045 * 180.02562 * 15 14 2 17 17 C 1.38259 * 119.99416 * 270.27876 * 16 15 14 18 18 C 1.38220 * 120.02067 * 180.23549 * 17 16 15 19 19 C 1.38238 * 120.00764 * 359.48336 * 18 17 16 20 20 C 1.38305 * 119.99297 * 0.26296 * 19 18 17 21 21 Br 1.89094 * 120.01387 * 179.97438 * 20 19 18 22 22 C 1.38191 * 119.99507 * 90.00188 * 16 15 14 23 23 H 1.08998 * 109.46802 * 296.04242 * 1 2 3 24 24 H 1.09002 * 109.46747 * 56.04475 * 1 2 3 25 25 H 1.08998 * 109.47215 * 176.04411 * 1 2 3 26 26 H 1.09005 * 109.46936 * 53.95345 * 3 2 1 27 27 H 1.08993 * 109.47101 * 173.95774 * 3 2 1 28 28 H 1.09005 * 109.46816 * 299.99571 * 4 3 2 29 29 H 1.08993 * 109.47727 * 59.99941 * 4 3 2 30 30 H 1.08999 * 109.47155 * 299.99928 * 5 4 3 31 31 H 1.09002 * 109.46910 * 60.00097 * 5 4 3 32 32 H 0.97005 * 119.99880 * 180.02562 * 9 8 6 33 33 H 1.09003 * 109.47277 * 306.04850 * 14 2 1 34 34 H 1.08996 * 109.47078 * 186.04389 * 14 2 1 35 35 H 1.09001 * 109.47412 * 60.00203 * 15 14 2 36 36 H 1.08996 * 109.47178 * 299.99951 * 15 14 2 37 37 H 1.07997 * 119.99226 * 359.97215 * 17 16 15 38 38 H 1.08002 * 119.99998 * 179.76945 * 18 17 16 39 39 H 1.08007 * 120.00835 * 180.23480 * 19 18 17 40 40 H 1.08002 * 120.00579 * 0.04011 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1792 3.4861 -1.3179 6 6 1.8212 4.1616 -2.6165 7 1 1.2595 3.6255 -3.3672 8 6 2.2116 5.4637 -2.8468 9 7 2.8969 6.1160 -1.9333 10 14 1.7672 6.3014 -4.4562 11 1 0.9999 5.3588 -5.3095 12 1 0.9400 7.5027 -4.1773 13 1 3.0089 6.7083 -5.1619 14 6 1.9955 -0.7660 1.1375 15 6 1.6314 -2.2426 0.9702 16 6 2.1710 -3.0284 2.1375 17 6 3.4425 -3.5683 2.0788 18 6 3.9360 -4.2932 3.1471 19 6 3.1625 -4.4696 4.2792 20 6 1.8925 -3.9254 4.3405 21 35 0.8336 -4.1670 5.8884 22 6 1.3970 -3.2044 3.2687 23 1 -0.3633 0.4512 0.9233 24 1 -0.3633 0.5740 -0.8525 25 1 -0.3633 -1.0252 -0.0709 26 1 1.5611 1.9273 0.8310 27 1 3.0797 1.3444 0.1082 28 1 2.0658 1.5016 -2.1492 29 1 0.5472 2.0846 -1.4265 30 1 1.7446 4.0417 -0.4870 31 1 3.2635 3.4594 -1.2096 32 1 3.1713 7.0323 -2.0952 33 1 1.5611 -0.3873 2.0628 34 1 3.0797 -0.6611 1.1755 35 1 2.0657 -2.6214 0.0450 36 1 0.5472 -2.3475 0.9322 37 1 4.0486 -3.4271 1.1962 38 1 4.9279 -4.7179 3.0994 39 1 3.5496 -5.0329 5.1155 40 1 0.4052 -2.7794 3.3160 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000361562100.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:46:09 Heat of formation + Delta-G solvation = -7.221882 kcal Electronic energy + Delta-G solvation = -18522.305874 eV Core-core repulsion = 15574.609271 eV Total energy + Delta-G solvation = -2947.696603 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 325.074 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.47698 -38.87266 -35.89772 -34.55261 -33.24156 -32.74347 -30.42905 -29.54571 -28.61004 -26.95001 -24.72973 -23.43573 -22.73923 -21.50083 -21.48541 -18.48581 -17.77583 -16.87263 -16.81497 -16.46426 -16.18052 -15.69099 -15.48752 -15.16867 -14.44603 -14.37074 -14.21922 -13.97700 -13.89795 -13.55124 -13.14276 -12.95245 -12.72170 -12.52845 -12.45337 -12.29687 -12.23316 -12.04527 -11.73722 -11.67533 -11.40393 -11.34907 -11.27196 -11.06011 -10.55189 -9.85285 -9.63347 -9.27753 -8.19954 -6.30815 0.12239 0.29705 0.63169 1.40404 1.40634 1.54353 2.41192 2.59989 2.99508 3.13201 3.77731 3.88454 4.02331 4.11001 4.21167 4.22971 4.31727 4.37690 4.43657 4.57303 4.61731 4.64397 4.73220 4.77109 4.89307 4.95075 5.00698 5.07330 5.09908 5.20185 5.22714 5.28685 5.38328 5.53408 5.58754 5.75013 5.86205 5.86709 6.07877 6.18842 6.28165 6.86407 7.38441 8.92254 Molecular weight = 325.07amu Principal moments of inertia in cm(-1) A = 0.030283 B = 0.001884 C = 0.001847 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.386309 B =14859.058206 C =15153.671308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.547 5.547 3 C 0.067 3.933 4 C -0.089 4.089 5 C 0.025 3.975 6 C -0.540 4.540 7 H 0.059 0.941 8 C -0.003 4.003 9 N -0.935 5.935 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.278 1.278 13 H -0.277 1.277 14 C 0.063 3.937 15 C -0.068 4.068 16 C -0.079 4.079 17 C -0.105 4.105 18 C -0.111 4.111 19 C -0.103 4.103 20 C -0.102 4.102 21 Br -0.057 7.057 22 C -0.100 4.100 23 H 0.023 0.977 24 H 0.063 0.937 25 H 0.088 0.912 26 H 0.021 0.979 27 H 0.067 0.933 28 H 0.053 0.947 29 H 0.051 0.949 30 H -0.011 1.011 31 H -0.008 1.008 32 H 0.263 0.737 33 H 0.028 0.972 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.144 0.856 38 H 0.156 0.844 39 H 0.145 0.855 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.014 -27.100 15.680 31.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.271 5.271 3 C -0.061 4.061 4 C -0.127 4.127 5 C -0.013 4.013 6 C -0.578 4.578 7 H 0.078 0.922 8 C -0.200 4.200 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.186 1.186 12 H -0.204 1.204 13 H -0.203 1.203 14 C -0.065 4.065 15 C -0.105 4.105 16 C -0.080 4.080 17 C -0.123 4.123 18 C -0.129 4.129 19 C -0.123 4.123 20 C -0.181 4.181 21 Br 0.028 6.972 22 C -0.119 4.119 23 H 0.041 0.959 24 H 0.082 0.918 25 H 0.107 0.893 26 H 0.040 0.960 27 H 0.086 0.914 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.007 0.993 31 H 0.010 0.990 32 H 0.072 0.928 33 H 0.047 0.953 34 H 0.091 0.909 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.162 0.838 38 H 0.174 0.826 39 H 0.163 0.837 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.188 -27.266 15.874 31.626 hybrid contribution -0.143 1.412 -0.078 1.422 sum -2.331 -25.854 15.796 30.387 Atomic orbital electron populations 1.22518 0.86992 1.02922 1.00494 1.62013 1.08658 1.13278 1.43107 1.22029 0.99509 0.87731 0.96829 1.21395 0.99824 0.95162 0.96292 1.18986 0.94692 0.92288 0.95347 1.21718 1.34830 0.98290 1.02985 0.92229 1.26009 0.94983 0.98352 1.00700 1.70107 1.39433 1.11751 1.36212 0.85383 0.78153 0.78324 0.79093 1.18553 1.20355 1.20305 1.22099 1.00229 0.93276 0.90907 1.20536 1.01762 0.92287 0.95949 1.19951 0.94759 0.98172 0.95136 1.21529 0.94869 0.96119 0.99777 1.21491 1.00890 0.98226 0.92339 1.21372 0.92170 0.99109 0.99643 1.21923 0.96815 1.05331 0.94028 1.96716 1.69228 1.96610 1.34639 1.21128 1.00662 0.98019 0.92132 0.95884 0.91835 0.89321 0.96031 0.91450 0.92826 0.93067 0.99305 0.98988 0.92782 0.95326 0.90904 0.89317 0.90119 0.83807 0.82596 0.83742 0.85038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.13 127.69 1.17 1.63 16 2 N -0.55 -15.44 4.76 -922.46 -4.39 -19.83 16 3 C 0.07 2.34 4.96 86.30 0.43 2.77 16 4 C -0.09 -3.74 5.08 30.60 0.16 -3.58 16 5 C 0.02 1.32 4.97 29.85 0.15 1.47 16 6 C -0.54 -31.30 9.11 25.60 0.23 -31.07 16 7 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 8 C 0.00 -0.18 5.46 84.66 0.46 0.29 16 9 N -0.93 -57.60 13.29 21.45 0.28 -57.32 16 10 Si 0.97 44.72 29.54 68.60 2.03 46.75 16 11 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 12 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 C 0.06 1.44 4.94 86.31 0.43 1.86 16 15 C -0.07 -1.21 5.27 29.85 0.16 -1.05 16 16 C -0.08 -1.35 5.13 -19.87 -0.10 -1.46 16 17 C -0.10 -1.56 9.70 22.27 0.22 -1.35 16 18 C -0.11 -1.44 10.05 22.27 0.22 -1.22 16 19 C -0.10 -1.52 9.79 22.29 0.22 -1.30 16 20 C -0.10 -1.77 6.22 22.31 0.14 -1.63 16 21 Br -0.06 -0.96 33.70 -20.37 -0.69 -1.64 16 22 C -0.10 -1.79 9.44 22.29 0.21 -1.57 16 23 H 0.02 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.06 1.76 6.30 -2.39 -0.02 1.75 16 25 H 0.09 1.76 6.47 -2.39 -0.02 1.75 16 26 H 0.02 0.78 8.12 -2.38 -0.02 0.76 16 27 H 0.07 2.36 7.93 -2.39 -0.02 2.34 16 28 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 29 H 0.05 2.10 6.47 -2.39 -0.02 2.09 16 30 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 31 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 33 H 0.03 0.68 8.12 -2.39 -0.02 0.66 16 34 H 0.07 1.69 7.93 -2.39 -0.02 1.67 16 35 H 0.09 1.55 8.09 -2.39 -0.02 1.53 16 36 H 0.08 1.34 6.50 -2.39 -0.02 1.33 16 37 H 0.14 1.73 8.06 -2.91 -0.02 1.71 16 38 H 0.16 1.20 8.06 -2.91 -0.02 1.17 16 39 H 0.14 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 Total: -1.00 -65.12 348.64 2.31 -62.81 By element: Atomic # 1 Polarization: 4.46 SS G_CDS: 1.00 Total: 5.46 kcal Atomic # 6 Polarization: -40.30 SS G_CDS: 4.08 Total: -36.22 kcal Atomic # 7 Polarization: -73.04 SS G_CDS: -4.11 Total: -77.15 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 35 Polarization: -0.96 SS G_CDS: -0.69 Total: -1.64 kcal Total: -65.12 2.31 -62.81 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361562100.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.590 kcal (2) G-P(sol) polarization free energy of solvation -65.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds