Wall clock time and date at job start Tue Mar 31 2020 13:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00174 * 2 1 4 4 C 1.53005 * 109.47093 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46868 * 64.99923 * 4 3 2 6 6 C 1.36924 * 120.00086 * 275.41952 * 5 4 3 7 7 H 1.08005 * 120.00570 * 146.75471 * 6 5 4 8 8 C 1.38818 * 120.00392 * 326.75561 * 6 5 4 9 9 N 1.31620 * 119.99488 * 336.05510 * 8 6 5 10 10 Si 1.86793 * 120.00369 * 156.04823 * 8 6 5 11 11 H 1.48500 * 109.47142 * 60.00087 * 10 8 6 12 12 H 1.48501 * 109.47312 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47192 * 300.00129 * 10 8 6 14 14 S 1.65604 * 119.99584 * 95.42107 * 5 4 3 15 15 O 1.42094 * 106.40661 * 336.45830 * 14 5 4 16 16 O 1.42104 * 106.39865 * 203.53333 * 14 5 4 17 17 C 1.76199 * 107.21609 * 90.00109 * 14 5 4 18 18 C 1.37866 * 120.02273 * 115.01826 * 17 14 5 19 19 C 1.38716 * 120.69177 * 180.02562 * 18 17 14 20 20 C 1.37766 * 120.27539 * 359.90122 * 19 18 17 21 21 C 1.39374 * 119.60016 * 0.06282 * 20 19 18 22 22 C 1.46792 * 134.34764 * 179.97438 * 21 20 19 23 23 C 1.33992 * 106.18689 * 180.02562 * 22 21 20 24 24 O 1.34446 * 110.16169 * 359.97438 * 23 22 21 25 25 C 1.34838 * 110.89324 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46625 * 60.00206 * 1 2 3 27 27 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46954 * 300.00608 * 1 2 3 29 29 H 1.09004 * 109.47153 * 59.99565 * 3 2 1 30 30 H 1.09006 * 109.47149 * 299.99976 * 3 2 1 31 31 H 1.08997 * 109.47154 * 304.99722 * 4 3 2 32 32 H 1.09004 * 109.47052 * 184.99476 * 4 3 2 33 33 H 0.97002 * 120.00039 * 179.97438 * 9 8 6 34 34 H 1.07996 * 119.64959 * 359.97438 * 18 17 14 35 35 H 1.08003 * 119.86388 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.19622 * 180.34025 * 20 19 18 37 37 H 1.08005 * 126.90258 * 0.07969 * 22 21 20 38 38 H 1.07994 * 124.91915 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 3.9916 -0.8001 -1.3706 7 1 3.7827 -1.2609 -2.3248 8 6 4.2754 -1.5908 -0.2655 9 7 4.9699 -1.0958 0.7370 10 14 3.6713 -3.3572 -0.2010 11 1 4.2419 -4.1174 -1.3419 12 1 4.1026 -3.9816 1.0755 13 1 2.1888 -3.3768 -0.2850 14 16 4.4573 1.5119 -2.5208 15 8 3.8370 2.7766 -2.3348 16 8 4.2873 0.7277 -3.6937 17 6 6.1905 1.7773 -2.3468 18 6 7.0634 1.2736 -3.2875 19 6 8.4304 1.4738 -3.1640 20 6 8.9347 2.1833 -2.0961 21 6 8.0629 2.6985 -1.1385 22 6 8.2360 3.4787 0.0928 23 6 7.0062 3.6734 0.5877 24 8 6.0895 3.0959 -0.2085 25 6 6.6781 2.4952 -1.2625 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8508 0.5685 0.8427 32 1 3.9786 2.1765 0.0901 33 1 5.1679 -1.6481 1.5094 34 1 6.6788 0.7165 -4.1290 35 1 9.1022 1.0729 -3.9086 36 1 9.9989 2.3432 -2.0041 37 1 9.1675 3.8267 0.5144 38 1 6.7834 4.2162 1.4943 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000414459927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:51 Heat of formation + Delta-G solvation = -70.457684 kcal Electronic energy + Delta-G solvation = -26896.313543 eV Core-core repulsion = 23026.513127 eV Total energy + Delta-G solvation = -3869.800416 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.97487 -37.39240 -37.28087 -35.64389 -35.36519 -34.29422 -32.41214 -31.74642 -29.97760 -28.88403 -28.81121 -25.81671 -24.35572 -23.12599 -21.92210 -21.59722 -21.15465 -18.38883 -17.67270 -16.94728 -16.78083 -16.27875 -15.79457 -15.62697 -15.31562 -15.28277 -14.56776 -14.52411 -14.38732 -14.02378 -13.57258 -13.11431 -12.95781 -12.34272 -12.16278 -12.02628 -11.93076 -11.79008 -11.56417 -11.29832 -11.26788 -11.02408 -10.85921 -10.59255 -10.56037 -10.54544 -10.16522 -10.01513 -9.87052 -9.59309 -9.20026 -8.89062 -8.23787 -7.93892 -7.80915 -6.55402 -4.02495 1.13022 1.80517 1.87252 2.67590 3.18746 3.20635 3.21133 3.32183 3.97382 4.08182 4.50195 4.60783 4.78713 4.81627 5.06559 5.13355 5.28703 5.46685 5.61904 5.71987 5.76346 5.81408 5.89150 5.93419 6.01818 6.09765 6.15614 6.21394 6.26862 6.44175 6.59067 6.64147 6.70456 6.76885 7.05147 7.12659 7.19554 7.49691 7.56615 8.00880 8.30552 8.72455 9.18616 10.38609 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.006031 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.278165 B = 4641.654282 C = 4951.165145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.359 6.359 3 C 0.054 3.946 4 C 0.122 3.878 5 N -0.784 5.784 6 C -0.208 4.208 7 H 0.111 0.889 8 C 0.046 3.954 9 N -0.817 5.817 10 Si 0.928 3.072 11 H -0.270 1.270 12 H -0.283 1.283 13 H -0.263 1.263 14 S 2.499 3.501 15 O -1.003 7.003 16 O -0.988 6.988 17 C -0.630 4.630 18 C -0.010 4.010 19 C -0.161 4.161 20 C -0.048 4.048 21 C -0.157 4.157 22 C -0.215 4.215 23 C 0.006 3.994 24 O -0.183 6.183 25 C 0.142 3.858 26 H 0.033 0.967 27 H 0.077 0.923 28 H 0.029 0.971 29 H 0.042 0.958 30 H 0.044 0.956 31 H 0.116 0.884 32 H 0.076 0.924 33 H 0.276 0.724 34 H 0.143 0.857 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.153 0.847 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.721 3.905 2.842 5.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.277 6.277 3 C -0.025 4.025 4 C -0.005 4.005 5 N -0.606 5.606 6 C -0.360 4.360 7 H 0.128 0.872 8 C -0.169 4.169 9 N -0.456 5.456 10 Si 0.754 3.246 11 H -0.195 1.195 12 H -0.209 1.209 13 H -0.188 1.188 14 S 2.600 3.400 15 O -0.992 6.992 16 O -0.978 6.978 17 C -0.707 4.707 18 C -0.029 4.029 19 C -0.179 4.179 20 C -0.066 4.066 21 C -0.159 4.159 22 C -0.234 4.234 23 C -0.059 4.059 24 O -0.083 6.083 25 C 0.093 3.907 26 H 0.052 0.948 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.133 0.867 32 H 0.094 0.906 33 H 0.086 0.914 34 H 0.161 0.839 35 H 0.145 0.855 36 H 0.140 0.860 37 H 0.171 0.829 38 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges 2.246 4.383 2.214 5.400 hybrid contribution 0.740 -0.390 0.529 0.990 sum 2.987 3.993 2.743 5.691 Atomic orbital electron populations 1.22659 0.83594 1.01731 0.98845 1.88155 1.17153 1.27356 1.95017 1.23021 0.95920 0.84588 0.98952 1.21500 0.90225 0.98309 0.90491 1.53921 1.63367 1.14069 1.29213 1.19814 1.37812 0.79667 0.98686 0.87151 1.25738 0.94033 1.00662 0.96487 1.69950 1.29968 1.37972 1.07706 0.85952 0.80324 0.80609 0.77739 1.19458 1.20881 1.18812 1.13357 0.74605 0.73927 0.78073 1.93328 1.75033 1.44131 1.86745 1.93304 1.85487 1.69467 1.49494 1.31121 1.33074 1.07760 0.98698 1.20787 0.92403 0.93559 0.96200 1.21091 0.95691 1.02047 0.99103 1.20518 0.98401 0.95247 0.92439 1.19968 0.93956 1.04152 0.97798 1.22379 0.98474 1.05610 0.96965 1.23895 0.87052 0.98743 0.96254 1.84091 1.36295 1.57585 1.30371 1.18704 0.90398 0.93877 0.87742 0.94847 0.90476 0.95264 0.93955 0.93727 0.86681 0.90629 0.91376 0.83884 0.85494 0.85975 0.82937 0.77851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 11.01 101.05 1.11 1.58 16 2 O -0.36 -7.50 9.92 -35.23 -0.35 -7.85 16 3 C 0.05 1.10 6.28 37.16 0.23 1.34 16 4 C 0.12 2.76 5.42 -4.04 -0.02 2.74 16 5 N -0.78 -19.38 2.85 -59.90 -0.17 -19.55 16 6 C -0.21 -5.24 8.39 -15.06 -0.13 -5.37 16 7 H 0.11 2.81 7.41 -52.48 -0.39 2.42 16 8 C 0.05 1.09 4.98 -17.43 -0.09 1.01 16 9 N -0.82 -19.95 11.27 55.49 0.63 -19.33 16 10 Si 0.93 19.18 29.62 -169.99 -5.03 14.14 16 11 H -0.27 -5.50 7.11 56.52 0.40 -5.09 16 12 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 13 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 14 S 2.50 62.67 5.55 -107.50 -0.60 62.07 16 15 O -1.00 -26.35 16.90 -57.17 -0.97 -27.31 16 16 O -0.99 -26.27 15.84 -57.17 -0.91 -27.17 16 17 C -0.63 -14.59 5.92 -39.48 -0.23 -14.82 16 18 C -0.01 -0.21 9.53 -39.54 -0.38 -0.59 16 19 C -0.16 -2.76 10.03 -39.58 -0.40 -3.16 16 20 C -0.05 -0.81 10.10 -39.33 -0.40 -1.20 16 21 C -0.16 -3.00 6.40 -105.16 -0.67 -3.67 16 22 C -0.22 -3.34 11.14 -37.62 -0.42 -3.76 16 23 C 0.01 0.09 11.96 29.24 0.35 0.44 16 24 O -0.18 -3.77 8.94 3.83 0.03 -3.74 16 25 C 0.14 3.13 7.04 -38.49 -0.27 2.86 16 26 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 30 H 0.04 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.12 2.73 5.30 -51.93 -0.28 2.45 16 32 H 0.08 1.66 5.89 -51.93 -0.31 1.36 16 33 H 0.28 6.32 8.31 -40.82 -0.34 5.98 16 34 H 0.14 2.79 7.30 -52.49 -0.38 2.40 16 35 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 36 H 0.12 1.60 8.06 -52.48 -0.42 1.18 16 37 H 0.15 1.79 8.06 -52.48 -0.42 1.37 16 38 H 0.20 2.10 8.06 -52.49 -0.42 1.67 16 LS Contribution 337.54 15.07 5.09 5.09 Total: -1.00 -32.17 337.54 -7.88 -40.05 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -4.29 Total: 6.21 kcal Atomic # 6 Polarization: -21.31 SS G_CDS: -1.31 Total: -22.62 kcal Atomic # 7 Polarization: -39.33 SS G_CDS: 0.45 Total: -38.87 kcal Atomic # 8 Polarization: -63.88 SS G_CDS: -2.19 Total: -66.07 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 16 Polarization: 62.67 SS G_CDS: -0.60 Total: 62.07 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -32.17 -7.88 -40.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414459927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.408 kcal (2) G-P(sol) polarization free energy of solvation -32.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.050 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds