Wall clock time and date at job start Tue Mar 31 2020 13:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00174 * 2 1 4 4 C 1.53005 * 109.47093 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46868 * 64.99923 * 4 3 2 6 6 C 1.36924 * 120.00086 * 275.41952 * 5 4 3 7 7 H 1.08005 * 120.00570 * 146.75471 * 6 5 4 8 8 C 1.38818 * 120.00392 * 326.75561 * 6 5 4 9 9 N 1.31620 * 119.99488 * 336.05510 * 8 6 5 10 10 Si 1.86793 * 120.00369 * 156.04823 * 8 6 5 11 11 H 1.48500 * 109.47142 * 60.00087 * 10 8 6 12 12 H 1.48501 * 109.47312 * 180.02562 * 10 8 6 13 13 H 1.48509 * 109.47192 * 300.00129 * 10 8 6 14 14 S 1.65604 * 119.99584 * 95.42107 * 5 4 3 15 15 O 1.42094 * 106.40661 * 336.45830 * 14 5 4 16 16 O 1.42104 * 106.39865 * 203.53333 * 14 5 4 17 17 C 1.76199 * 107.21609 * 90.00109 * 14 5 4 18 18 C 1.37866 * 120.02273 * 115.01826 * 17 14 5 19 19 C 1.38716 * 120.69177 * 180.02562 * 18 17 14 20 20 C 1.37766 * 120.27539 * 359.90122 * 19 18 17 21 21 C 1.39374 * 119.60016 * 0.06282 * 20 19 18 22 22 C 1.46792 * 134.34764 * 179.97438 * 21 20 19 23 23 C 1.33992 * 106.18689 * 180.02562 * 22 21 20 24 24 O 1.34446 * 110.16169 * 359.97438 * 23 22 21 25 25 C 1.34838 * 110.89324 * 0.02562 * 24 23 22 26 26 H 1.09001 * 109.46625 * 60.00206 * 1 2 3 27 27 H 1.08999 * 109.47080 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.46954 * 300.00608 * 1 2 3 29 29 H 1.09004 * 109.47153 * 59.99565 * 3 2 1 30 30 H 1.09006 * 109.47149 * 299.99976 * 3 2 1 31 31 H 1.08997 * 109.47154 * 304.99722 * 4 3 2 32 32 H 1.09004 * 109.47052 * 184.99476 * 4 3 2 33 33 H 0.97002 * 120.00039 * 179.97438 * 9 8 6 34 34 H 1.07996 * 119.64959 * 359.97438 * 18 17 14 35 35 H 1.08003 * 119.86388 * 179.97438 * 19 18 17 36 36 H 1.08004 * 120.19622 * 180.34025 * 20 19 18 37 37 H 1.08005 * 126.90258 * 0.07969 * 22 21 20 38 38 H 1.07994 * 124.91915 * 180.02562 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9767 0.5638 -1.2509 6 6 3.9916 -0.8001 -1.3706 7 1 3.7827 -1.2609 -2.3248 8 6 4.2754 -1.5908 -0.2655 9 7 4.9699 -1.0958 0.7370 10 14 3.6713 -3.3572 -0.2010 11 1 4.2419 -4.1174 -1.3419 12 1 4.1026 -3.9816 1.0755 13 1 2.1888 -3.3768 -0.2850 14 16 4.4573 1.5119 -2.5208 15 8 3.8370 2.7766 -2.3348 16 8 4.2873 0.7277 -3.6937 17 6 6.1905 1.7773 -2.3468 18 6 7.0634 1.2736 -3.2875 19 6 8.4304 1.4738 -3.1640 20 6 8.9347 2.1833 -2.0961 21 6 8.0629 2.6985 -1.1385 22 6 8.2360 3.4787 0.0928 23 6 7.0062 3.6734 0.5877 24 8 6.0895 3.0959 -0.2085 25 6 6.6781 2.4952 -1.2625 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.6886 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8508 0.5685 0.8427 32 1 3.9786 2.1765 0.0901 33 1 5.1679 -1.6481 1.5094 34 1 6.6788 0.7165 -4.1290 35 1 9.1022 1.0729 -3.9086 36 1 9.9989 2.3432 -2.0041 37 1 9.1675 3.8267 0.5144 38 1 6.7834 4.2162 1.4943 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000414459927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:50 Heat of formation + Delta-G solvation = -93.154041 kcal Electronic energy + Delta-G solvation = -26897.297730 eV Core-core repulsion = 23026.513127 eV Total energy + Delta-G solvation = -3870.784604 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.35580 -38.98151 -38.73711 -37.65284 -37.10578 -36.32653 -33.77771 -33.57951 -31.41926 -30.50521 -30.23792 -27.27738 -26.11209 -24.56358 -23.35677 -23.31885 -22.51654 -20.23206 -19.30248 -18.63823 -18.28040 -18.04888 -17.30407 -17.11940 -16.94903 -16.87388 -16.18834 -16.16055 -15.99761 -15.58845 -15.11084 -14.77902 -14.26436 -13.86469 -13.64235 -13.61855 -13.51906 -13.28574 -13.16864 -13.01134 -12.75717 -12.70346 -12.61253 -12.56938 -12.37907 -12.19962 -11.91947 -11.72948 -11.32020 -11.24687 -11.00128 -10.39378 -9.74207 -9.62135 -9.26980 -8.37842 -5.94131 -0.32432 0.01180 0.35317 1.39920 1.51229 1.56975 1.66597 1.88500 2.29787 2.53077 2.73566 2.94714 3.13896 3.24515 3.55644 3.67665 3.93259 4.03620 4.31666 4.34023 4.36945 4.41805 4.52188 4.57698 4.61175 4.61767 4.66442 4.75509 4.80576 4.90194 5.14854 5.21161 5.29426 5.30016 5.35018 5.51813 5.69990 5.71730 6.18209 6.41465 6.52768 6.84834 7.31921 8.56958 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013707 B = 0.006031 C = 0.005654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2042.278165 B = 4641.654282 C = 4951.165145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.389 6.389 3 C 0.057 3.943 4 C 0.121 3.879 5 N -0.791 5.791 6 C -0.233 4.233 7 H 0.095 0.905 8 C 0.021 3.979 9 N -0.835 5.835 10 Si 0.981 3.019 11 H -0.266 1.266 12 H -0.272 1.272 13 H -0.263 1.263 14 S 2.504 3.496 15 O -1.026 7.026 16 O -1.016 7.016 17 C -0.668 4.668 18 C -0.031 4.031 19 C -0.158 4.158 20 C -0.036 4.036 21 C -0.174 4.174 22 C -0.208 4.208 23 C -0.004 4.004 24 O -0.212 6.212 25 C 0.104 3.896 26 H 0.036 0.964 27 H 0.091 0.909 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.031 0.969 31 H 0.106 0.894 32 H 0.074 0.926 33 H 0.282 0.718 34 H 0.139 0.861 35 H 0.170 0.830 36 H 0.171 0.829 37 H 0.197 0.803 38 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.594 4.017 4.371 7.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.307 6.307 3 C -0.021 4.021 4 C -0.005 4.005 5 N -0.613 5.613 6 C -0.385 4.385 7 H 0.113 0.887 8 C -0.192 4.192 9 N -0.474 5.474 10 Si 0.803 3.197 11 H -0.191 1.191 12 H -0.196 1.196 13 H -0.188 1.188 14 S 2.610 3.390 15 O -1.016 7.016 16 O -1.006 7.006 17 C -0.749 4.749 18 C -0.050 4.050 19 C -0.177 4.177 20 C -0.054 4.054 21 C -0.175 4.175 22 C -0.226 4.226 23 C -0.067 4.067 24 O -0.113 6.113 25 C 0.054 3.946 26 H 0.055 0.945 27 H 0.109 0.891 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.123 0.877 32 H 0.092 0.908 33 H 0.092 0.908 34 H 0.157 0.843 35 H 0.187 0.813 36 H 0.188 0.812 37 H 0.214 0.786 38 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 4.077 4.495 3.753 7.135 hybrid contribution 0.272 -0.316 0.067 0.422 sum 4.348 4.179 3.819 7.139 Atomic orbital electron populations 1.22899 0.81155 1.03176 1.00246 1.88091 1.19915 1.27457 1.95272 1.22943 0.94518 0.84905 0.99776 1.21550 0.91864 0.97764 0.89351 1.53818 1.64144 1.13836 1.29490 1.19806 1.39625 0.80189 0.98834 0.88697 1.26341 0.93528 1.03585 0.95711 1.69997 1.30205 1.39150 1.08048 0.85183 0.79697 0.76658 0.78175 1.19114 1.19616 1.18814 1.12756 0.75216 0.73336 0.77661 1.93271 1.76297 1.45058 1.86971 1.93244 1.86465 1.70031 1.50886 1.30728 1.31915 1.11101 1.01169 1.21019 0.94243 0.93886 0.95838 1.21539 0.94513 1.01407 1.00215 1.21134 1.00522 0.92918 0.90848 1.20586 0.92908 1.04485 0.99538 1.22869 1.00123 1.04376 0.95254 1.24980 0.86746 0.98107 0.96848 1.84062 1.38302 1.58206 1.30761 1.18961 0.92280 0.95045 0.88268 0.94499 0.89081 0.92733 0.90698 0.95120 0.87652 0.90786 0.90808 0.84324 0.81283 0.81166 0.78600 0.73219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 11.01 113.37 1.25 1.92 16 2 O -0.39 -16.30 9.92 -148.98 -1.48 -17.77 16 3 C 0.06 2.38 6.28 71.98 0.45 2.83 16 4 C 0.12 5.68 5.42 86.38 0.47 6.15 16 5 N -0.79 -40.83 2.85 -343.44 -0.98 -41.80 16 6 C -0.23 -12.22 8.39 84.04 0.71 -11.51 16 7 H 0.10 5.12 7.41 -2.91 -0.02 5.10 16 8 C 0.02 1.04 4.98 84.86 0.42 1.46 16 9 N -0.84 -41.18 11.27 21.65 0.24 -40.93 16 10 Si 0.98 39.20 29.62 68.60 2.03 41.23 16 11 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 12 H -0.27 -10.25 7.11 99.48 0.71 -9.54 16 13 H -0.26 -10.48 7.11 99.48 0.71 -9.78 16 14 S 2.50 132.57 5.55 -56.49 -0.31 132.26 16 15 O -1.03 -56.86 16.90 -128.00 -2.16 -59.03 16 16 O -1.02 -57.37 15.84 -128.00 -2.03 -59.40 16 17 C -0.67 -32.09 5.92 22.34 0.13 -31.95 16 18 C -0.03 -1.28 9.53 22.30 0.21 -1.07 16 19 C -0.16 -5.13 10.03 22.27 0.22 -4.91 16 20 C -0.04 -1.11 10.10 22.43 0.23 -0.89 16 21 C -0.17 -6.29 6.40 -20.21 -0.13 -6.42 16 22 C -0.21 -5.77 11.14 23.54 0.26 -5.51 16 23 C 0.00 -0.10 11.96 66.85 0.80 0.70 16 24 O -0.21 -8.80 8.94 -9.20 -0.08 -8.88 16 25 C 0.10 4.62 7.04 22.98 0.16 4.79 16 26 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 28 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.11 5.13 5.30 -2.39 -0.01 5.12 16 32 H 0.07 3.41 5.89 -2.39 -0.01 3.39 16 33 H 0.28 12.85 8.31 -92.71 -0.77 12.08 16 34 H 0.14 5.68 7.30 -2.91 -0.02 5.66 16 35 H 0.17 3.91 8.06 -2.91 -0.02 3.89 16 36 H 0.17 3.50 8.06 -2.91 -0.02 3.48 16 37 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 38 H 0.25 4.32 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -73.96 337.54 1.51 -72.45 By element: Atomic # 1 Polarization: 25.21 SS G_CDS: 1.09 Total: 26.30 kcal Atomic # 6 Polarization: -49.60 SS G_CDS: 5.19 Total: -44.42 kcal Atomic # 7 Polarization: -82.00 SS G_CDS: -0.73 Total: -82.73 kcal Atomic # 8 Polarization: -139.34 SS G_CDS: -5.75 Total: -145.08 kcal Atomic # 14 Polarization: 39.20 SS G_CDS: 2.03 Total: 41.23 kcal Atomic # 16 Polarization: 132.57 SS G_CDS: -0.31 Total: 132.26 kcal Total: -73.96 1.51 -72.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000414459927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.706 kcal (2) G-P(sol) polarization free energy of solvation -73.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.664 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds