Wall clock time and date at job start Tue Mar 31 2020 14:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86797 * 120.00502 * 2 1 4 4 H 1.48507 * 109.47355 * 270.00199 * 3 2 1 5 5 H 1.48499 * 109.47061 * 30.00066 * 3 2 1 6 6 H 1.48495 * 109.47350 * 150.00097 * 3 2 1 7 7 C 1.38807 * 119.99773 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99874 * 359.97438 * 7 2 1 9 9 S 1.76205 * 120.00025 * 179.97438 * 7 2 1 10 10 C 1.80996 * 99.99814 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47036 * 180.02562 * 10 9 7 12 12 O 1.21277 * 120.00097 * 0.02562 * 11 10 9 13 13 N 1.34774 * 119.99751 * 180.02562 * 11 10 9 14 14 C 1.47152 * 120.98699 * 4.12682 * 13 11 10 15 15 C 1.53300 * 108.38479 * 129.48478 * 14 13 11 16 16 O 1.42958 * 109.22312 * 52.30659 * 15 14 13 17 17 C 1.42966 * 114.16686 * 297.41794 * 16 15 14 18 18 C 1.47153 * 120.98012 * 184.14913 * 13 11 10 19 19 H 1.09001 * 109.68149 * 110.79008 * 18 13 11 20 20 C 1.50700 * 109.71375 * 350.25268 * 18 13 11 21 21 C 1.38241 * 119.97727 * 289.60528 * 20 18 13 22 22 C 1.38200 * 120.02761 * 179.76158 * 21 20 18 23 23 C 1.38454 * 119.97186 * 0.51379 * 22 21 20 24 24 F 1.35098 * 120.02650 * 179.76821 * 23 22 21 25 25 C 1.38463 * 119.95209 * 359.73687 * 23 22 21 26 26 C 1.38196 * 119.97147 * 0.02562 * 25 23 22 27 27 H 0.97007 * 119.99515 * 0.02562 * 1 2 3 28 28 H 1.09001 * 109.47011 * 59.99973 * 10 9 7 29 29 H 1.09005 * 109.47432 * 300.00395 * 10 9 7 30 30 H 1.08997 * 109.68251 * 249.21039 * 14 13 11 31 31 H 1.09003 * 109.68076 * 9.72847 * 14 13 11 32 32 H 1.09000 * 109.51131 * 292.38129 * 15 14 13 33 33 H 1.09002 * 109.51036 * 172.22773 * 15 14 13 34 34 H 1.08997 * 109.51519 * 182.50583 * 17 16 15 35 35 H 1.09000 * 109.51372 * 302.66070 * 17 16 15 36 36 H 1.08001 * 119.98545 * 0.02562 * 21 20 18 37 37 H 1.08005 * 120.01264 * 180.25412 * 22 21 20 38 38 H 1.08004 * 120.01558 * 180.02562 * 25 23 22 39 39 H 1.07999 * 119.99232 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4979 2.0464 -1.4001 5 1 1.4479 2.6526 0.7000 6 1 3.5479 1.4400 0.7000 7 6 2.0103 -1.2021 -0.0005 8 1 1.4702 -2.1374 -0.0005 9 16 3.7723 -1.2022 -0.0012 10 6 4.0865 -2.9847 -0.0009 11 6 5.5729 -3.2328 -0.0008 12 8 6.3439 -2.2966 -0.0005 13 7 6.0454 -4.4950 -0.0011 14 6 5.1326 -5.6456 -0.0924 15 6 5.6314 -6.5711 -1.2080 16 8 7.0117 -6.8717 -0.9883 17 6 7.8734 -5.7318 -1.0342 18 6 7.4894 -4.7632 0.0902 19 1 7.7188 -5.2128 1.0563 20 6 8.2565 -3.4755 -0.0652 21 6 8.3036 -2.8435 -1.2939 22 6 9.0027 -1.6600 -1.4364 23 6 9.6649 -1.1127 -0.3507 24 9 10.3526 0.0419 -0.4900 25 6 9.6214 -1.7491 0.8782 26 6 8.9176 -2.9300 1.0196 27 1 -0.4850 0.8401 -0.0004 28 1 3.6431 -3.4319 -0.8907 29 1 3.6438 -3.4316 0.8893 30 1 5.1248 -6.1840 0.8553 31 1 4.1261 -5.2981 -0.3255 32 1 5.5157 -6.0750 -2.1716 33 1 5.0522 -7.4945 -1.2011 34 1 8.9071 -6.0513 -0.9024 35 1 7.7658 -5.2326 -1.9972 36 1 7.7904 -3.2728 -2.1416 37 1 9.0360 -1.1643 -2.3955 38 1 10.1372 -1.3229 1.7260 39 1 8.8837 -3.4269 1.9779 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000456480706.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:56 Heat of formation + Delta-G solvation = -96.385923 kcal Electronic energy + Delta-G solvation = -25567.391167 eV Core-core repulsion = 21708.839208 eV Total energy + Delta-G solvation = -3858.551959 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.093 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.84276 -41.94709 -39.42673 -39.23973 -35.84448 -34.68460 -34.05763 -32.03180 -30.93284 -30.12905 -28.24383 -27.83133 -25.35485 -24.19998 -23.11332 -22.68831 -20.53149 -19.57880 -18.66554 -18.21019 -17.60762 -17.52286 -17.12409 -16.89318 -16.56880 -16.52472 -16.33106 -16.18081 -15.75666 -15.40590 -14.98591 -14.89885 -14.70319 -14.44507 -14.39721 -13.96745 -13.63766 -13.39143 -13.33395 -13.07623 -13.02640 -12.67455 -12.55146 -12.36372 -11.92080 -11.87682 -11.82398 -11.19645 -11.18489 -10.97649 -10.51194 -9.95801 -9.57219 -9.04096 -8.98948 -8.53336 -6.22762 0.20635 0.41055 0.96676 1.28187 1.43389 1.50607 1.56641 1.96910 2.22049 2.65634 2.72483 2.83037 2.85422 3.38229 3.43635 3.58102 3.75659 3.86951 3.96747 4.04278 4.11168 4.13052 4.25746 4.27995 4.34101 4.42373 4.50470 4.62266 4.75367 4.85370 4.92310 5.00771 5.04720 5.25073 5.32388 5.35498 5.55645 5.69261 6.01274 6.08619 6.10080 6.19132 6.92591 7.10100 8.59105 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.010827 B = 0.004872 C = 0.003533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2585.403747 B = 5745.549538 C = 7922.386971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.049 3.951 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.239 1.239 7 C -0.527 4.527 8 H 0.063 0.937 9 S -0.171 6.171 10 C -0.107 4.107 11 C 0.533 3.467 12 O -0.519 6.519 13 N -0.609 5.609 14 C 0.067 3.933 15 C 0.047 3.953 16 O -0.384 6.384 17 C 0.059 3.941 18 C 0.155 3.845 19 H 0.107 0.893 20 C -0.058 4.058 21 C -0.060 4.060 22 C -0.158 4.158 23 C 0.067 3.933 24 F -0.156 7.156 25 C -0.154 4.154 26 C -0.088 4.088 27 H 0.276 0.724 28 H 0.108 0.892 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.102 0.898 32 H 0.056 0.944 33 H 0.134 0.866 34 H 0.129 0.871 35 H 0.059 0.941 36 H 0.126 0.874 37 H 0.133 0.867 38 H 0.144 0.856 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.278 -15.342 -0.971 23.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.157 4.157 3 Si 0.733 3.267 4 H -0.189 1.189 5 H -0.185 1.185 6 H -0.163 1.163 7 C -0.675 4.675 8 H 0.081 0.919 9 S 0.056 5.944 10 C -0.258 4.258 11 C 0.320 3.680 12 O -0.395 6.395 13 N -0.345 5.345 14 C -0.055 4.055 15 C -0.030 4.030 16 O -0.302 6.302 17 C -0.019 4.019 18 C 0.052 3.948 19 H 0.124 0.876 20 C -0.059 4.059 21 C -0.078 4.078 22 C -0.177 4.177 23 C 0.048 3.952 24 F -0.135 7.135 25 C -0.173 4.173 26 C -0.106 4.106 27 H 0.086 0.914 28 H 0.126 0.874 29 H 0.125 0.875 30 H 0.114 0.886 31 H 0.120 0.880 32 H 0.075 0.925 33 H 0.152 0.848 34 H 0.146 0.854 35 H 0.077 0.923 36 H 0.143 0.857 37 H 0.151 0.849 38 H 0.162 0.838 39 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 19.319 -14.026 -0.940 23.892 hybrid contribution -1.444 0.583 -0.121 1.562 sum 17.875 -13.443 -1.061 22.391 Atomic orbital electron populations 1.70011 1.07247 1.28938 1.49256 1.25493 0.95178 1.02002 0.92999 0.85921 0.80680 0.79989 0.80101 1.18857 1.18468 1.16262 1.22470 0.90422 0.96581 1.58028 0.91916 1.84740 1.06200 1.05984 1.97524 1.23309 0.96401 0.99460 1.06651 1.19966 0.89313 0.82935 0.75825 1.90846 1.57059 1.42888 1.48735 1.48214 1.06904 1.05219 1.74204 1.22747 0.94244 0.86732 1.01792 1.23149 0.82444 1.00899 0.96518 1.87979 1.17787 1.31649 1.92782 1.23138 0.95985 0.86346 0.96418 1.20947 0.78792 0.93031 1.02008 0.87568 1.19477 0.96615 0.95838 0.93972 1.20665 0.95831 0.93856 0.97484 1.21097 1.00169 0.97828 0.98611 1.17912 0.97234 0.83955 0.96096 1.91432 1.77814 1.47546 1.96674 1.21174 1.02809 0.97157 0.96115 1.20904 0.96263 0.94819 0.98642 0.91409 0.87402 0.87522 0.88613 0.88012 0.92530 0.84817 0.85368 0.92301 0.85657 0.84869 0.83846 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.28 13.97 21.65 0.30 -54.98 16 2 C 0.05 2.83 5.50 84.86 0.47 3.30 16 3 Si 0.91 44.89 27.74 68.60 1.90 46.79 16 4 H -0.26 -12.74 7.11 99.48 0.71 -12.03 16 5 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.24 -11.80 6.74 99.48 0.67 -11.13 16 7 C -0.53 -30.08 10.04 67.96 0.68 -29.39 16 8 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 9 S -0.17 -8.37 18.55 -56.49 -1.05 -9.42 16 10 C -0.11 -3.81 4.58 71.24 0.33 -3.49 16 11 C 0.53 16.64 7.50 87.66 0.66 17.30 16 12 O -0.52 -19.30 11.07 -3.02 -0.03 -19.34 16 13 N -0.61 -13.39 3.02 -797.66 -2.41 -15.79 16 14 C 0.07 1.05 6.53 86.36 0.56 1.61 16 15 C 0.05 0.61 6.98 72.08 0.50 1.11 16 16 O -0.38 -6.05 10.74 -148.98 -1.60 -7.65 16 17 C 0.06 0.87 6.11 72.08 0.44 1.31 16 18 C 0.15 2.86 3.30 44.22 0.15 3.01 16 19 H 0.11 1.67 7.93 -2.39 -0.02 1.65 16 20 C -0.06 -1.34 2.82 -19.86 -0.06 -1.40 16 21 C -0.06 -1.52 6.85 22.26 0.15 -1.36 16 22 C -0.16 -4.38 10.03 22.31 0.22 -4.16 16 23 C 0.07 1.95 7.30 22.38 0.16 2.11 16 24 F -0.16 -4.74 17.27 44.97 0.78 -3.96 16 25 C -0.15 -3.91 10.03 22.31 0.22 -3.68 16 26 C -0.09 -2.01 9.33 22.26 0.21 -1.80 16 27 H 0.28 15.46 8.31 -92.70 -0.77 14.69 16 28 H 0.11 3.52 7.49 -2.39 -0.02 3.50 16 29 H 0.11 3.57 8.13 -2.39 -0.02 3.55 16 30 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.61 6.07 -2.39 -0.01 1.59 16 32 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.06 0.92 6.56 -2.39 -0.02 0.90 16 36 H 0.13 2.91 6.86 -2.91 -0.02 2.89 16 37 H 0.13 3.37 8.06 -2.91 -0.02 3.35 16 38 H 0.14 3.06 8.06 -2.91 -0.02 3.04 16 39 H 0.15 2.59 7.98 -2.91 -0.02 2.57 16 Total: -1.00 -72.18 336.24 3.63 -68.55 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: 1.04 Total: 11.34 kcal Atomic # 6 Polarization: -20.24 SS G_CDS: 4.70 Total: -15.54 kcal Atomic # 7 Polarization: -68.67 SS G_CDS: -2.11 Total: -70.77 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -1.63 Total: -26.99 kcal Atomic # 9 Polarization: -4.74 SS G_CDS: 0.78 Total: -3.96 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.90 Total: 46.79 kcal Atomic # 16 Polarization: -8.37 SS G_CDS: -1.05 Total: -9.42 kcal Total: -72.18 3.63 -68.55 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000456480706.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.838 kcal (2) G-P(sol) polarization free energy of solvation -72.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds