Wall clock time and date at job start Tue Mar 31 2020 14:45:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86806 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47360 * 300.00165 * 3 2 1 6 6 H 1.48497 * 109.47176 * 60.00647 * 3 2 1 7 7 C 1.39953 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00206 * 185.19859 * 7 2 1 9 9 C 1.41041 * 119.99966 * 5.20036 * 7 2 1 10 10 C 1.40743 * 120.30501 * 34.96078 * 9 7 2 11 11 C 1.36452 * 119.94844 * 180.32055 * 10 9 7 12 12 C 1.38888 * 120.58166 * 359.68234 * 11 10 9 13 13 C 1.38186 * 120.62544 * 0.02562 * 12 11 10 14 14 C 1.38698 * 120.03192 * 0.02562 * 13 12 11 15 15 N 1.38967 * 120.29193 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99818 * 24.83103 * 15 14 13 17 17 O 1.21810 * 119.99938 * 5.63374 * 16 15 14 18 18 C 1.41247 * 119.99538 * 185.62549 * 16 15 14 19 19 C 1.35146 * 119.99683 * 180.02562 * 18 16 15 20 20 S 1.76199 * 119.99885 * 180.02562 * 19 18 16 21 21 C 1.76203 * 99.99874 * 185.00186 * 20 19 18 22 22 C 1.38943 * 120.07659 * 85.00411 * 21 20 19 23 23 C 1.38085 * 119.92315 * 179.97438 * 22 21 20 24 24 C 1.38298 * 120.07755 * 0.02562 * 23 22 21 25 25 C 1.38307 * 120.15539 * 0.27849 * 24 23 22 26 26 C 1.38087 * 120.07195 * 359.44240 * 25 24 23 27 27 H 0.97003 * 120.00285 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.02657 * 0.02959 * 10 9 7 29 29 H 1.07998 * 119.70963 * 179.70544 * 11 10 9 30 30 H 1.08009 * 119.68797 * 180.02562 * 12 11 10 31 31 H 1.08007 * 119.98441 * 179.97438 * 13 12 11 32 32 H 0.96998 * 119.99984 * 204.83925 * 15 14 13 33 33 H 1.07994 * 120.00436 * 0.02562 * 18 16 15 34 34 H 1.08001 * 120.00216 * 0.02562 * 19 18 16 35 35 H 1.08002 * 120.03786 * 359.95860 * 22 21 20 36 36 H 1.08004 * 119.96122 * 180.02562 * 23 22 21 37 37 H 1.08005 * 119.92621 * 179.97438 * 24 23 22 38 38 H 1.07995 * 119.96229 * 179.70357 * 25 24 23 39 39 H 1.08000 * 120.03731 * 180.28736 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8837 2.3966 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0083 -1.2120 -0.0005 8 1 3.0850 -1.2139 0.0842 9 6 1.3075 -2.4309 -0.1118 10 6 0.1486 -2.5139 -0.9061 11 6 -0.5274 -3.6952 -1.0034 12 6 -0.0789 -4.8236 -0.3293 13 6 1.0595 -4.7706 0.4524 14 6 1.7659 -3.5829 0.5702 15 7 2.9111 -3.5233 1.3552 16 6 3.6240 -4.6422 1.5930 17 8 3.3248 -5.6844 1.0381 18 6 4.7182 -4.6060 2.4855 19 6 5.4334 -5.7277 2.7235 20 16 6.7979 -5.6828 3.8374 21 6 7.4107 -7.3226 3.6368 22 6 8.2890 -7.6158 2.6008 23 6 8.7677 -8.9019 2.4469 24 6 8.3735 -9.8976 3.3220 25 6 7.4945 -9.6106 4.3506 26 6 7.0164 -8.3255 4.5138 27 1 -0.4851 0.8400 0.0004 28 1 -0.2080 -1.6421 -1.4345 29 1 -1.4189 -3.7533 -1.6102 30 1 -0.6249 -5.7514 -0.4168 31 1 1.3988 -5.6543 0.9724 32 1 3.1972 -2.6766 1.7321 33 1 4.9833 -3.6820 2.9777 34 1 5.1686 -6.6517 2.2310 35 1 8.5967 -6.8389 1.9166 36 1 9.4507 -9.1304 1.6421 37 1 8.7491 -10.9027 3.1991 38 1 7.1850 -10.3916 5.0293 39 1 6.3336 -8.1011 5.3200 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492770332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:11 Heat of formation + Delta-G solvation = 33.190634 kcal Electronic energy + Delta-G solvation = -22700.488412 eV Core-core repulsion = 19278.324539 eV Total energy + Delta-G solvation = -3422.163873 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -39.70645 -39.29226 -37.27096 -33.76759 -33.61446 -32.75853 -31.39234 -31.37016 -29.60662 -28.48725 -25.37926 -24.10453 -23.03899 -22.97489 -21.34056 -20.38542 -19.22775 -18.02572 -17.42712 -17.10297 -16.58386 -16.05898 -15.39624 -15.19867 -14.99304 -14.51574 -14.25683 -14.07360 -13.84782 -13.84381 -13.16410 -12.99986 -12.67854 -12.58943 -12.23548 -11.77140 -11.75408 -11.60142 -11.33131 -11.18235 -10.99582 -10.73642 -10.62833 -10.47276 -10.13968 -9.70106 -9.36703 -9.35913 -9.28671 -9.25236 -8.79815 -7.78541 -7.31210 -6.88599 -6.61124 -4.40478 0.53364 0.98783 1.17049 1.46683 2.19848 2.74130 2.97357 3.06507 3.10234 3.19996 3.34691 3.91618 3.92566 4.22012 4.47531 4.57606 4.67908 4.68504 5.01997 5.07782 5.08119 5.32396 5.58824 5.59328 5.65291 5.91939 5.93501 5.96510 6.05882 6.12056 6.35060 6.47316 6.54090 6.60467 6.95426 7.08832 7.17913 7.30125 7.69055 7.70237 7.99061 8.09567 8.14291 8.45620 8.58003 8.82996 8.86996 9.04790 10.24347 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.002557 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.785678 B =10947.498629 C =12126.527328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.262 1.262 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.474 4.474 8 H 0.075 0.925 9 C 0.098 3.902 10 C -0.136 4.136 11 C -0.121 4.121 12 C -0.214 4.214 13 C -0.101 4.101 14 C 0.027 3.973 15 N -0.627 5.627 16 C 0.534 3.466 17 O -0.549 6.549 18 C -0.181 4.181 19 C -0.098 4.098 20 S -0.002 6.002 21 C -0.147 4.147 22 C -0.066 4.066 23 C -0.129 4.129 24 C -0.091 4.091 25 C -0.130 4.130 26 C -0.065 4.065 27 H 0.279 0.721 28 H 0.119 0.881 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.406 0.594 33 H 0.129 0.871 34 H 0.145 0.855 35 H 0.134 0.866 36 H 0.130 0.870 37 H 0.127 0.873 38 H 0.129 0.871 39 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.906 -11.319 8.357 20.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.141 4.141 3 Si 0.735 3.265 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.505 4.505 8 H 0.093 0.907 9 C 0.094 3.906 10 C -0.156 4.156 11 C -0.140 4.140 12 C -0.234 4.234 13 C -0.121 4.121 14 C -0.067 4.067 15 N -0.267 5.267 16 C 0.322 3.678 17 O -0.432 6.432 18 C -0.214 4.214 19 C -0.232 4.232 20 S 0.247 5.753 21 C -0.258 4.258 22 C -0.086 4.086 23 C -0.149 4.149 24 C -0.110 4.110 25 C -0.149 4.149 26 C -0.086 4.086 27 H 0.089 0.911 28 H 0.137 0.863 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.135 0.865 32 H 0.242 0.758 33 H 0.147 0.853 34 H 0.163 0.837 35 H 0.151 0.849 36 H 0.147 0.853 37 H 0.145 0.855 38 H 0.147 0.853 39 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 15.009 -10.995 8.781 20.573 hybrid contribution -0.086 0.238 -0.634 0.682 sum 14.923 -10.758 8.147 20.119 Atomic orbital electron populations 1.69787 1.07284 1.28852 1.37310 1.25823 0.94849 1.00950 0.92455 0.86232 0.80637 0.81127 0.78509 1.18573 1.19900 1.20028 1.19297 0.94593 0.90054 1.46567 0.90659 1.17396 0.93154 0.91019 0.88989 1.20903 0.97736 0.96374 1.00585 1.20502 0.99020 0.93943 1.00524 1.20370 0.99707 0.97454 1.05879 1.20805 0.94577 0.96769 0.99921 1.17883 0.91006 0.96795 1.01034 1.42879 1.24657 1.10566 1.48648 1.16808 0.83312 0.84490 0.83165 1.90759 1.70057 1.30877 1.51470 1.21542 0.98720 0.98718 1.02446 1.25918 0.96712 1.02077 0.98479 1.84482 1.29573 1.09448 1.51808 1.21925 1.04421 0.98321 1.01181 1.21629 0.94132 0.97172 0.95680 1.21249 1.00855 0.92868 0.99891 1.21399 0.95958 0.99465 0.94135 1.21246 0.98245 0.96548 0.98895 1.21597 0.97285 0.92150 0.97527 0.91053 0.86266 0.89319 0.89137 0.86495 0.75778 0.85303 0.83723 0.84859 0.85255 0.85485 0.85270 0.84840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.43 11.00 55.55 0.61 -19.82 16 2 C 0.08 1.83 5.31 -17.33 -0.09 1.74 16 3 Si 0.91 18.19 29.56 -169.99 -5.03 13.17 16 4 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 5 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.47 -11.96 8.18 -37.88 -0.31 -12.27 16 8 H 0.08 1.81 7.45 -52.49 -0.39 1.42 16 9 C 0.10 2.57 5.51 -106.65 -0.59 1.98 16 10 C -0.14 -3.53 8.57 -39.28 -0.34 -3.87 16 11 C -0.12 -2.90 9.97 -39.98 -0.40 -3.30 16 12 C -0.21 -5.08 10.04 -39.36 -0.39 -5.47 16 13 C -0.10 -2.48 8.70 -39.43 -0.34 -2.82 16 14 C 0.03 0.68 6.46 -83.21 -0.54 0.14 16 15 N -0.63 -13.21 5.10 -12.17 -0.06 -13.27 16 16 C 0.53 10.55 7.34 -15.11 -0.11 10.44 16 17 O -0.55 -12.54 13.25 5.09 0.07 -12.47 16 18 C -0.18 -2.77 9.51 -39.54 -0.38 -3.15 16 19 C -0.10 -1.37 9.49 29.63 0.28 -1.08 16 20 S 0.00 -0.02 22.02 -107.50 -2.37 -2.38 16 21 C -0.15 -1.54 5.45 -39.06 -0.21 -1.75 16 22 C -0.07 -0.63 9.79 -39.38 -0.39 -1.01 16 23 C -0.13 -1.03 10.04 -39.62 -0.40 -1.42 16 24 C -0.09 -0.67 10.04 -39.53 -0.40 -1.07 16 25 C -0.13 -1.01 10.04 -39.61 -0.40 -1.40 16 26 C -0.07 -0.60 9.79 -39.37 -0.39 -0.99 16 27 H 0.28 6.47 8.30 -40.82 -0.34 6.13 16 28 H 0.12 3.16 6.51 -52.48 -0.34 2.82 16 29 H 0.09 1.89 8.06 -52.49 -0.42 1.46 16 30 H 0.09 1.91 8.06 -52.48 -0.42 1.49 16 31 H 0.12 2.86 5.78 -52.48 -0.30 2.56 16 32 H 0.41 7.70 7.66 -40.82 -0.31 7.39 16 33 H 0.13 1.65 8.06 -52.49 -0.42 1.23 16 34 H 0.15 2.20 7.41 -52.49 -0.39 1.81 16 35 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 36 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 37 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 38 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 39 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 354.03 15.07 5.34 5.34 Total: -1.00 -30.02 354.03 -11.08 -41.10 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -4.25 Total: 13.65 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: -5.38 Total: -25.31 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.55 Total: -33.08 kcal Atomic # 8 Polarization: -12.54 SS G_CDS: 0.07 Total: -12.47 kcal Atomic # 14 Polarization: 18.19 SS G_CDS: -5.03 Total: 13.17 kcal Atomic # 16 Polarization: -0.02 SS G_CDS: -2.37 Total: -2.38 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.02 -11.08 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492770332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.288 kcal (2) G-P(sol) polarization free energy of solvation -30.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds