Wall clock time and date at job start Tue Mar 31 2020 14:45:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30849 * 1 3 3 Si 1.86806 * 119.99815 * 2 1 4 4 H 1.48501 * 109.46853 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47360 * 300.00165 * 3 2 1 6 6 H 1.48497 * 109.47176 * 60.00647 * 3 2 1 7 7 C 1.39953 * 120.00301 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00206 * 185.19859 * 7 2 1 9 9 C 1.41041 * 119.99966 * 5.20036 * 7 2 1 10 10 C 1.40743 * 120.30501 * 34.96078 * 9 7 2 11 11 C 1.36452 * 119.94844 * 180.32055 * 10 9 7 12 12 C 1.38888 * 120.58166 * 359.68234 * 11 10 9 13 13 C 1.38186 * 120.62544 * 0.02562 * 12 11 10 14 14 C 1.38698 * 120.03192 * 0.02562 * 13 12 11 15 15 N 1.38967 * 120.29193 * 179.97438 * 14 13 12 16 16 C 1.34781 * 119.99818 * 24.83103 * 15 14 13 17 17 O 1.21810 * 119.99938 * 5.63374 * 16 15 14 18 18 C 1.41247 * 119.99538 * 185.62549 * 16 15 14 19 19 C 1.35146 * 119.99683 * 180.02562 * 18 16 15 20 20 S 1.76199 * 119.99885 * 180.02562 * 19 18 16 21 21 C 1.76203 * 99.99874 * 185.00186 * 20 19 18 22 22 C 1.38943 * 120.07659 * 85.00411 * 21 20 19 23 23 C 1.38085 * 119.92315 * 179.97438 * 22 21 20 24 24 C 1.38298 * 120.07755 * 0.02562 * 23 22 21 25 25 C 1.38307 * 120.15539 * 0.27849 * 24 23 22 26 26 C 1.38087 * 120.07195 * 359.44240 * 25 24 23 27 27 H 0.97003 * 120.00285 * 359.97438 * 1 2 3 28 28 H 1.08005 * 120.02657 * 0.02959 * 10 9 7 29 29 H 1.07998 * 119.70963 * 179.70544 * 11 10 9 30 30 H 1.08009 * 119.68797 * 180.02562 * 12 11 10 31 31 H 1.08007 * 119.98441 * 179.97438 * 13 12 11 32 32 H 0.96998 * 119.99984 * 204.83925 * 15 14 13 33 33 H 1.07994 * 120.00436 * 0.02562 * 18 16 15 34 34 H 1.08001 * 120.00216 * 0.02562 * 19 18 16 35 35 H 1.08002 * 120.03786 * 359.95860 * 22 21 20 36 36 H 1.08004 * 119.96122 * 180.02562 * 23 22 21 37 37 H 1.08005 * 119.92621 * 179.97438 * 24 23 22 38 38 H 1.07995 * 119.96229 * 179.70357 * 25 24 23 39 39 H 1.08000 * 120.03731 * 180.28736 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3085 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 3.7025 1.3464 -0.0006 5 1 1.8837 2.3966 -1.2125 6 1 1.8838 2.3964 1.2125 7 6 2.0083 -1.2120 -0.0005 8 1 3.0850 -1.2139 0.0842 9 6 1.3075 -2.4309 -0.1118 10 6 0.1486 -2.5139 -0.9061 11 6 -0.5274 -3.6952 -1.0034 12 6 -0.0789 -4.8236 -0.3293 13 6 1.0595 -4.7706 0.4524 14 6 1.7659 -3.5829 0.5702 15 7 2.9111 -3.5233 1.3552 16 6 3.6240 -4.6422 1.5930 17 8 3.3248 -5.6844 1.0381 18 6 4.7182 -4.6060 2.4855 19 6 5.4334 -5.7277 2.7235 20 16 6.7979 -5.6828 3.8374 21 6 7.4107 -7.3226 3.6368 22 6 8.2890 -7.6158 2.6008 23 6 8.7677 -8.9019 2.4469 24 6 8.3735 -9.8976 3.3220 25 6 7.4945 -9.6106 4.3506 26 6 7.0164 -8.3255 4.5138 27 1 -0.4851 0.8400 0.0004 28 1 -0.2080 -1.6421 -1.4345 29 1 -1.4189 -3.7533 -1.6102 30 1 -0.6249 -5.7514 -0.4168 31 1 1.3988 -5.6543 0.9724 32 1 3.1972 -2.6766 1.7321 33 1 4.9833 -3.6820 2.9777 34 1 5.1686 -6.6517 2.2310 35 1 8.5967 -6.8389 1.9166 36 1 9.4507 -9.1304 1.6421 37 1 8.7491 -10.9027 3.1991 38 1 7.1850 -10.3916 5.0293 39 1 6.3336 -8.1011 5.3200 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000492770332.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:10 Heat of formation + Delta-G solvation = 18.909029 kcal Electronic energy + Delta-G solvation = -22701.107709 eV Core-core repulsion = 19278.324539 eV Total energy + Delta-G solvation = -3422.783170 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.35925 -39.92008 -39.07639 -35.49401 -35.47002 -34.06115 -32.04325 -31.99707 -31.50823 -30.28999 -27.21610 -25.52663 -23.83669 -23.61112 -23.14249 -22.09886 -20.74382 -19.24574 -18.81542 -18.57723 -18.04943 -17.03283 -16.93783 -16.20261 -16.05965 -16.00150 -15.89179 -15.51095 -14.84509 -14.73292 -14.44532 -14.44198 -14.12604 -13.85724 -13.66700 -13.60723 -13.12093 -12.83940 -12.75437 -12.57321 -12.23475 -12.13086 -11.98632 -11.80957 -11.54267 -11.53101 -11.10557 -11.07601 -10.56912 -10.00018 -9.99671 -9.25717 -8.88716 -8.64529 -8.42292 -6.32766 -0.23832 -0.10344 0.35346 0.61822 0.95168 1.10748 1.25913 1.43435 1.52370 1.57141 2.24669 2.37352 2.64003 2.70260 2.82806 3.71354 3.86498 3.92551 3.99540 4.15982 4.20489 4.43863 4.45106 4.53227 4.63562 4.70599 4.72240 4.80674 4.93111 5.00262 5.13622 5.21332 5.25420 5.32286 5.34359 5.44950 5.45115 5.80045 5.84142 5.87732 6.13801 6.16788 6.26748 6.65111 6.77016 6.95889 7.02569 7.38287 8.43776 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.017303 B = 0.002557 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.785678 B =10947.498629 C =12126.527328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.838 5.838 2 C 0.034 3.966 3 Si 0.985 3.015 4 H -0.255 1.255 5 H -0.272 1.272 6 H -0.268 1.268 7 C -0.494 4.494 8 H 0.080 0.920 9 C 0.069 3.931 10 C -0.158 4.158 11 C -0.125 4.125 12 C -0.217 4.217 13 C -0.117 4.117 14 C 0.022 3.978 15 N -0.630 5.630 16 C 0.537 3.463 17 O -0.586 6.586 18 C -0.205 4.205 19 C -0.078 4.078 20 S 0.035 5.965 21 C -0.177 4.177 22 C -0.080 4.080 23 C -0.135 4.135 24 C -0.088 4.088 25 C -0.133 4.133 26 C -0.077 4.077 27 H 0.285 0.715 28 H 0.106 0.894 29 H 0.114 0.886 30 H 0.116 0.884 31 H 0.116 0.884 32 H 0.414 0.586 33 H 0.155 0.845 34 H 0.129 0.871 35 H 0.136 0.864 36 H 0.151 0.849 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.949 -12.033 9.389 22.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.178 1.178 5 H -0.197 1.197 6 H -0.193 1.193 7 C -0.525 4.525 8 H 0.098 0.902 9 C 0.065 3.935 10 C -0.179 4.179 11 C -0.144 4.144 12 C -0.236 4.236 13 C -0.137 4.137 14 C -0.074 4.074 15 N -0.271 5.271 16 C 0.328 3.672 17 O -0.471 6.471 18 C -0.238 4.238 19 C -0.212 4.212 20 S 0.286 5.714 21 C -0.289 4.289 22 C -0.101 4.101 23 C -0.154 4.154 24 C -0.106 4.106 25 C -0.153 4.153 26 C -0.098 4.098 27 H 0.096 0.904 28 H 0.124 0.876 29 H 0.132 0.868 30 H 0.134 0.866 31 H 0.133 0.867 32 H 0.252 0.748 33 H 0.173 0.827 34 H 0.147 0.853 35 H 0.154 0.846 36 H 0.169 0.831 37 H 0.174 0.826 38 H 0.171 0.829 39 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 17.080 -11.716 9.840 22.930 hybrid contribution -0.593 0.204 -0.887 1.087 sum 16.486 -11.512 8.953 22.011 Atomic orbital electron populations 1.69862 1.08812 1.30140 1.37691 1.26686 0.95579 1.04175 0.91441 0.85109 0.79398 0.76335 0.78559 1.17839 1.19669 1.19274 1.19507 0.94899 0.90526 1.47556 0.90158 1.17741 0.93885 0.92092 0.89760 1.20936 0.98719 0.96747 1.01462 1.20746 0.99656 0.93348 1.00663 1.20688 0.99453 0.98405 1.05079 1.20978 0.95254 0.96811 1.00702 1.18062 0.91962 0.96434 1.00904 1.42878 1.24108 1.11553 1.48568 1.17410 0.83633 0.83319 0.82823 1.90723 1.71297 1.31987 1.53101 1.21340 0.98436 1.00516 1.03555 1.26107 0.96886 1.00805 0.97420 1.84381 1.27094 1.10396 1.49562 1.22082 1.05894 0.98204 1.02684 1.21800 0.94376 0.98246 0.95653 1.21577 1.00911 0.92323 1.00591 1.21817 0.94954 1.00653 0.93194 1.21595 0.97872 0.96458 0.99369 1.21802 0.97635 0.92715 0.97611 0.90437 0.87619 0.86814 0.86561 0.86663 0.74814 0.82696 0.85301 0.84631 0.83121 0.82629 0.82891 0.84204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -43.20 11.00 21.83 0.24 -42.96 16 2 C 0.03 1.68 5.31 85.25 0.45 2.14 16 3 Si 0.98 37.13 29.56 68.60 2.03 39.16 16 4 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 5 H -0.27 -10.08 7.11 99.48 0.71 -9.37 16 6 H -0.27 -9.73 7.11 99.48 0.71 -9.03 16 7 C -0.49 -25.40 8.18 23.37 0.19 -25.21 16 8 H 0.08 3.90 7.45 -2.91 -0.02 3.88 16 9 C 0.07 3.71 5.51 -21.18 -0.12 3.59 16 10 C -0.16 -8.48 8.57 22.47 0.19 -8.28 16 11 C -0.13 -6.07 9.97 22.01 0.22 -5.86 16 12 C -0.22 -10.30 10.04 22.41 0.22 -10.08 16 13 C -0.12 -5.90 8.70 22.37 0.19 -5.70 16 14 C 0.02 1.10 6.46 38.93 0.25 1.36 16 15 N -0.63 -27.12 5.10 -310.58 -1.58 -28.71 16 16 C 0.54 21.63 7.34 84.98 0.62 22.25 16 17 O -0.59 -27.48 13.25 -4.70 -0.06 -27.54 16 18 C -0.20 -6.20 9.51 22.30 0.21 -5.99 16 19 C -0.08 -2.13 9.49 67.11 0.64 -1.49 16 20 S 0.04 0.75 22.02 -56.49 -1.24 -0.50 16 21 C -0.18 -3.49 5.45 22.61 0.12 -3.37 16 22 C -0.08 -1.42 9.79 22.40 0.22 -1.20 16 23 C -0.13 -1.84 10.04 22.25 0.22 -1.61 16 24 C -0.09 -1.03 10.04 22.30 0.22 -0.81 16 25 C -0.13 -1.74 10.04 22.25 0.22 -1.51 16 26 C -0.08 -1.31 9.79 22.40 0.22 -1.09 16 27 H 0.29 13.38 8.30 -92.71 -0.77 12.61 16 28 H 0.11 5.83 6.51 -2.91 -0.02 5.81 16 29 H 0.11 4.80 8.06 -2.91 -0.02 4.77 16 30 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 31 H 0.12 5.79 5.78 -2.91 -0.02 5.77 16 32 H 0.41 16.00 7.66 -92.71 -0.71 15.29 16 33 H 0.16 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.13 3.95 7.41 -2.91 -0.02 3.93 16 35 H 0.14 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.15 1.33 8.06 -2.91 -0.02 1.31 16 37 H 0.16 0.90 8.06 -2.91 -0.02 0.87 16 38 H 0.15 1.19 8.06 -2.91 -0.02 1.17 16 39 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 Total: -1.00 -66.23 354.03 4.07 -62.16 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: 0.38 Total: 41.26 kcal Atomic # 6 Polarization: -47.19 SS G_CDS: 4.32 Total: -42.87 kcal Atomic # 7 Polarization: -70.32 SS G_CDS: -1.34 Total: -71.66 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.06 Total: -27.54 kcal Atomic # 14 Polarization: 37.13 SS G_CDS: 2.03 Total: 39.16 kcal Atomic # 16 Polarization: 0.75 SS G_CDS: -1.24 Total: -0.50 kcal Total: -66.23 4.07 -62.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492770332.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.068 kcal (2) G-P(sol) polarization free energy of solvation -66.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds