Wall clock time and date at job start Tue Mar 31 2020 14:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30863 * 1 3 3 Si 1.86801 * 119.99686 * 2 1 4 4 H 1.48497 * 109.47428 * 90.00080 * 3 2 1 5 5 H 1.48504 * 109.46650 * 209.99749 * 3 2 1 6 6 H 1.48495 * 109.47556 * 329.99461 * 3 2 1 7 7 C 1.39949 * 119.99997 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00275 * 21.09865 * 7 2 1 9 9 C 1.41051 * 119.99947 * 201.09742 * 7 2 1 10 10 C 1.40735 * 120.30503 * 26.74212 * 9 7 2 11 11 C 1.36453 * 119.94729 * 179.97438 * 10 9 7 12 12 C 1.38879 * 120.58750 * 0.02562 * 11 10 9 13 13 C 1.38194 * 120.62084 * 0.02562 * 12 11 10 14 14 C 1.38695 * 120.03204 * 359.73889 * 13 12 11 15 15 N 1.38963 * 120.29166 * 180.25696 * 14 13 12 16 16 C 1.34773 * 120.00131 * 19.48543 * 15 14 13 17 17 O 1.21816 * 120.00085 * 5.72482 * 16 15 14 18 18 C 1.41243 * 120.00108 * 185.72268 * 16 15 14 19 19 C 1.35152 * 119.99745 * 179.97438 * 18 16 15 20 20 S 1.76195 * 120.00323 * 0.02562 * 19 18 16 21 21 C 1.76201 * 100.00165 * 185.01736 * 20 19 18 22 22 C 1.38933 * 120.07831 * 274.48793 * 21 20 19 23 23 C 1.38087 * 119.92251 * 179.74153 * 22 21 20 24 24 C 1.38303 * 120.07503 * 0.53425 * 23 22 21 25 25 C 1.38296 * 120.15184 * 359.71694 * 24 23 22 26 26 C 1.38084 * 120.07989 * 0.02681 * 25 24 23 27 27 H 0.97000 * 119.99732 * 174.94486 * 1 2 3 28 28 H 1.08008 * 120.02697 * 359.95725 * 10 9 7 29 29 H 1.08002 * 119.70408 * 179.97438 * 11 10 9 30 30 H 1.07996 * 119.69117 * 179.97438 * 12 11 10 31 31 H 1.08000 * 119.98490 * 179.97438 * 13 12 11 32 32 H 0.96999 * 120.00177 * 199.48236 * 15 14 13 33 33 H 1.07995 * 120.00239 * 0.02562 * 18 16 15 34 34 H 1.07998 * 119.99755 * 180.02562 * 19 18 16 35 35 H 1.08007 * 120.04111 * 359.97438 * 22 21 20 36 36 H 1.08002 * 119.96097 * 180.25058 * 23 22 21 37 37 H 1.08007 * 119.91924 * 179.70113 * 24 23 22 38 38 H 1.08004 * 119.95675 * 180.02562 * 25 24 23 39 39 H 1.07999 * 120.04009 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3086 0.0000 0.0000 3 14 2.2425 1.6178 0.0000 4 1 2.4901 2.0465 1.4000 5 1 3.5401 1.4402 -0.7000 6 1 1.4401 2.6527 -0.7001 7 6 2.0084 -1.2120 0.0005 8 1 1.5227 -2.1161 -0.3357 9 6 3.3480 -1.2527 0.4403 10 6 3.8205 -0.3044 1.3666 11 6 5.1177 -0.3509 1.7874 12 6 5.9812 -1.3279 1.3092 13 6 5.5427 -2.2702 0.3984 14 6 4.2281 -2.2498 -0.0431 15 7 3.7801 -3.1979 -0.9549 16 6 4.4612 -4.3492 -1.1195 17 8 5.4082 -4.6052 -0.3972 18 6 4.0771 -5.2588 -2.1294 19 6 4.7605 -6.4130 -2.2947 20 16 6.1302 -6.7833 -1.2501 21 6 6.6948 -8.2733 -2.0023 22 6 6.1296 -9.4912 -1.6452 23 6 6.5708 -10.6563 -2.2407 24 6 7.5818 -10.6131 -3.1835 25 6 8.1502 -9.4030 -3.5375 26 6 7.7102 -8.2335 -2.9499 27 1 -0.4850 -0.8368 -0.0740 28 1 3.1570 0.4597 1.7439 29 1 5.4762 0.3790 2.4981 30 1 7.0051 -1.3510 1.6518 31 1 6.2231 -3.0251 0.0329 32 1 2.9771 -3.0313 -1.4729 33 1 3.2378 -5.0317 -2.7700 34 1 4.4671 -7.1084 -3.0672 35 1 5.3434 -9.5262 -0.9055 36 1 6.1291 -11.6030 -1.9665 37 1 7.9283 -11.5265 -3.6441 38 1 8.9392 -9.3729 -4.2744 39 1 8.1549 -7.2889 -3.2265 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492770350.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:14 Heat of formation + Delta-G solvation = 38.380859 kcal Electronic energy + Delta-G solvation = -23060.700096 eV Core-core repulsion = 19638.761288 eV Total energy + Delta-G solvation = -3421.938808 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.94820 -39.12036 -37.54017 -33.97799 -33.76777 -32.82802 -31.23248 -31.17924 -30.22930 -28.67772 -25.05120 -23.95937 -22.92595 -22.82706 -21.72472 -20.19911 -19.55293 -18.25182 -17.80510 -17.42492 -16.64696 -16.00495 -15.24396 -15.14959 -14.75013 -14.59068 -14.29223 -14.19828 -13.79010 -13.71770 -13.37185 -13.15299 -12.72111 -12.53043 -12.49744 -12.11012 -11.69740 -11.54486 -11.45923 -11.13288 -10.85111 -10.62707 -10.45100 -10.38334 -9.85911 -9.61014 -9.45809 -9.24121 -9.21131 -9.00840 -8.55922 -7.74274 -7.60845 -7.35132 -6.91206 -4.53454 0.71803 1.10163 1.13773 1.83025 2.57273 2.61259 2.74837 3.19466 3.33185 3.49519 3.52542 3.77261 3.98723 4.02173 4.54833 4.60384 4.67827 4.78628 5.02027 5.15999 5.22124 5.41659 5.47248 5.47701 5.71447 5.92452 5.95972 6.06182 6.11206 6.13543 6.16562 6.27366 6.41753 6.62172 6.71935 6.84157 7.05306 7.36156 7.38126 7.52649 7.69256 7.86571 7.94188 8.23553 8.37132 8.49110 8.70219 8.85706 9.94951 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.026914 B = 0.002598 C = 0.002456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.112869 B =10773.622129 C =11396.484599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.046 3.954 3 Si 1.075 2.925 4 H -0.276 1.276 5 H -0.263 1.263 6 H -0.291 1.291 7 C -0.523 4.523 8 H 0.075 0.925 9 C 0.085 3.915 10 C -0.234 4.234 11 C -0.088 4.088 12 C -0.230 4.230 13 C -0.090 4.090 14 C 0.024 3.976 15 N -0.626 5.626 16 C 0.520 3.480 17 O -0.521 6.521 18 C -0.207 4.207 19 C -0.112 4.112 20 S 0.129 5.871 21 C -0.204 4.204 22 C -0.072 4.072 23 C -0.133 4.133 24 C -0.099 4.099 25 C -0.133 4.133 26 C -0.067 4.067 27 H 0.286 0.714 28 H 0.108 0.892 29 H 0.093 0.907 30 H 0.095 0.905 31 H 0.133 0.867 32 H 0.407 0.593 33 H 0.137 0.863 34 H 0.139 0.861 35 H 0.129 0.871 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.444 -15.596 -7.956 19.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.174 4.174 3 Si 0.901 3.099 4 H -0.203 1.203 5 H -0.188 1.188 6 H -0.219 1.219 7 C -0.552 4.552 8 H 0.093 0.907 9 C 0.081 3.919 10 C -0.254 4.254 11 C -0.107 4.107 12 C -0.249 4.249 13 C -0.110 4.110 14 C -0.070 4.070 15 N -0.266 5.266 16 C 0.312 3.688 17 O -0.405 6.405 18 C -0.244 4.244 19 C -0.248 4.248 20 S 0.378 5.622 21 C -0.313 4.313 22 C -0.092 4.092 23 C -0.153 4.153 24 C -0.118 4.118 25 C -0.153 4.153 26 C -0.087 4.087 27 H 0.097 0.903 28 H 0.126 0.874 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.150 0.850 32 H 0.243 0.757 33 H 0.154 0.846 34 H 0.157 0.843 35 H 0.147 0.853 36 H 0.142 0.858 37 H 0.141 0.859 38 H 0.143 0.857 39 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 10.290 -13.702 -6.475 18.318 hybrid contribution -1.128 -2.521 -1.511 3.148 sum 9.163 -16.222 -7.986 20.271 Atomic orbital electron populations 1.70572 1.08081 1.33092 1.31818 1.27256 0.95531 1.04490 0.90139 0.83568 0.75510 0.72917 0.77893 1.20253 1.18757 1.21859 1.20360 0.96604 0.97006 1.41251 0.90739 1.17498 0.92250 0.91432 0.90733 1.20699 0.96501 1.04239 1.03931 1.20393 0.94080 0.97437 0.98801 1.20355 0.98713 1.00171 1.05686 1.21181 0.94009 0.98472 0.97369 1.17743 0.93146 0.96611 0.99529 1.42802 1.28193 1.16112 1.39501 1.17069 0.84299 0.82197 0.85265 1.90503 1.29316 1.74427 1.46273 1.21511 1.04360 0.95667 1.02825 1.26183 0.98731 0.98896 1.00940 1.86729 1.27959 1.15402 1.32075 1.23555 1.02427 1.02212 1.03096 1.21623 0.98267 0.91646 0.97648 1.21249 0.97992 0.98354 0.97685 1.21313 0.95741 0.97951 0.96749 1.21254 1.00647 0.92648 1.00707 1.21582 0.94735 0.98733 0.93635 0.90308 0.87449 0.88843 0.88655 0.84966 0.75673 0.84569 0.84311 0.85326 0.85756 0.85909 0.85704 0.85174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.09 13.66 55.55 0.76 -20.33 16 2 C 0.05 1.16 5.38 -17.32 -0.09 1.07 16 3 Si 1.07 23.82 25.01 -169.99 -4.25 19.57 16 4 H -0.28 -5.87 6.37 56.52 0.36 -5.51 16 5 H -0.26 -5.82 7.10 56.52 0.40 -5.42 16 6 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.52 -13.32 8.74 -37.88 -0.33 -13.65 16 8 H 0.07 1.90 7.22 -52.49 -0.38 1.52 16 9 C 0.09 2.14 5.17 -106.64 -0.55 1.58 16 10 C -0.23 -5.67 7.32 -39.28 -0.29 -5.96 16 11 C -0.09 -1.97 9.96 -39.99 -0.40 -2.37 16 12 C -0.23 -5.08 10.04 -39.36 -0.40 -5.47 16 13 C -0.09 -2.09 8.77 -39.43 -0.35 -2.43 16 14 C 0.02 0.57 6.53 -83.22 -0.54 0.03 16 15 N -0.63 -12.70 5.16 -12.17 -0.06 -12.76 16 16 C 0.52 9.70 7.37 -15.12 -0.11 9.59 16 17 O -0.52 -10.77 10.22 5.08 0.05 -10.72 16 18 C -0.21 -2.98 9.83 -39.54 -0.39 -3.37 16 19 C -0.11 -1.45 10.05 29.63 0.30 -1.15 16 20 S 0.13 1.84 18.58 -107.50 -2.00 -0.16 16 21 C -0.20 -2.40 5.45 -39.06 -0.21 -2.61 16 22 C -0.07 -0.75 9.79 -39.38 -0.39 -1.13 16 23 C -0.13 -1.16 10.04 -39.61 -0.40 -1.56 16 24 C -0.10 -0.81 10.04 -39.54 -0.40 -1.20 16 25 C -0.13 -1.16 10.04 -39.62 -0.40 -1.56 16 26 C -0.07 -0.70 9.79 -39.38 -0.39 -1.09 16 27 H 0.29 7.18 8.73 -40.82 -0.36 6.83 16 28 H 0.11 2.56 4.36 -52.48 -0.23 2.33 16 29 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 30 H 0.10 1.87 8.06 -52.49 -0.42 1.45 16 31 H 0.13 3.02 5.40 -52.49 -0.28 2.74 16 32 H 0.41 7.59 7.30 -40.82 -0.30 7.29 16 33 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 34 H 0.14 1.42 8.02 -52.49 -0.42 1.00 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 36 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 37 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 38 H 0.12 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 LS Contribution 343.02 15.07 5.17 5.17 Total: -1.00 -29.11 343.02 -9.84 -38.95 By element: Atomic # 1 Polarization: 15.73 SS G_CDS: -4.19 Total: 11.55 kcal Atomic # 6 Polarization: -25.94 SS G_CDS: -5.33 Total: -31.27 kcal Atomic # 7 Polarization: -33.79 SS G_CDS: 0.70 Total: -33.10 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.05 Total: -10.72 kcal Atomic # 14 Polarization: 23.82 SS G_CDS: -4.25 Total: 19.57 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -2.00 Total: -0.16 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.11 -9.84 -38.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492770350.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.332 kcal (2) G-P(sol) polarization free energy of solvation -29.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds