Wall clock time and date at job start Tue Mar 31 2020 14:40:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86799 * 120.00657 * 2 1 4 4 H 1.48498 * 109.47345 * 270.00328 * 3 2 1 5 5 H 1.48506 * 109.46612 * 29.99956 * 3 2 1 6 6 H 1.48501 * 109.47455 * 149.99853 * 3 2 1 7 7 C 1.37878 * 119.99988 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99732 * 359.97438 * 7 2 1 9 9 C 1.50695 * 120.00344 * 180.02562 * 7 2 1 10 10 C 1.53009 * 109.47220 * 180.02562 * 9 7 2 11 11 C 1.50703 * 109.47033 * 180.02562 * 10 9 7 12 12 O 1.21289 * 119.99924 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99913 * 179.97438 * 11 10 9 14 14 C 1.39940 * 119.99847 * 175.38270 * 13 11 10 15 15 C 1.39035 * 119.98523 * 214.82734 * 14 13 11 16 16 C 1.38254 * 120.26667 * 179.77041 * 15 14 13 17 17 C 1.37960 * 120.24598 * 0.50918 * 16 15 14 18 18 C 1.39820 * 119.96931 * 359.75027 * 17 16 15 19 19 C 1.43207 * 120.13573 * 179.97438 * 18 17 16 20 20 C 9.97629 * 169.71305 * 121.01431 * 2 1 3 21 21 C 8.58064 * 149.39959 * 334.55697 * 6 1 2 22 22 C 1.36411 * 125.34186 * 128.89039 * 21 20 19 23 23 C 1.37717 * 114.39201 * 179.97438 * 22 21 20 24 24 C 1.33715 * 115.21305 * 0.02562 * 23 22 21 25 25 S 1.75825 * 110.00047 * 359.75154 * 24 23 22 26 26 C 1.38527 * 119.98903 * 35.11008 * 14 13 11 27 27 H 0.96997 * 119.99229 * 0.02562 * 1 2 3 28 28 H 1.09003 * 109.47419 * 60.00168 * 9 7 2 29 29 H 1.09001 * 109.47092 * 299.99348 * 9 7 2 30 30 H 1.09001 * 109.46492 * 299.99638 * 10 9 7 31 31 H 1.08996 * 109.46883 * 60.00115 * 10 9 7 32 32 H 0.97001 * 119.99904 * 355.38616 * 13 11 10 33 33 H 1.07996 * 119.86577 * 0.02686 * 15 14 13 34 34 H 1.08000 * 119.87523 * 180.26071 * 16 15 14 35 35 H 1.08001 * 120.01426 * 179.76528 * 17 16 15 36 36 H 1.07999 * 122.80121 * 359.97229 * 22 21 20 37 37 H 1.08004 * 122.39598 * 180.02562 * 23 22 21 38 38 H 1.08004 * 125.00114 * 180.02562 * 24 23 22 39 39 H 1.08002 * 120.11888 * 359.95037 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0014 9 6 3.5114 -1.1942 0.0011 10 6 4.0214 -2.6368 0.0010 11 6 5.5284 -2.6368 0.0022 12 8 6.1349 -1.5864 0.0026 13 7 6.2023 -3.8041 0.0028 14 6 7.5984 -3.8061 -0.0936 15 6 8.2455 -4.8225 -0.7872 16 6 9.6242 -4.8277 -0.8901 17 6 10.3691 -3.8297 -0.2964 18 6 9.7291 -2.8055 0.4081 19 6 10.4988 -1.7682 1.0263 20 6 11.1310 -0.9179 1.5269 21 6 11.9013 0.1194 2.1446 22 6 11.9875 1.4073 1.7035 23 6 12.7938 2.2184 2.4708 24 6 13.3649 1.6227 3.5228 25 16 12.8792 -0.0656 3.5948 26 6 8.3353 -2.7985 0.5070 27 1 -0.4849 0.8401 -0.0004 28 1 3.8745 -0.6802 0.8911 29 1 3.8752 -0.6806 -0.8889 30 1 3.6577 -3.1507 0.8908 31 1 3.6584 -3.1503 -0.8892 32 1 5.7195 -4.6427 0.0701 33 1 7.6687 -5.6090 -1.2509 34 1 10.1201 -5.6180 -1.4340 35 1 11.4461 -3.8395 -0.3759 36 1 11.4670 1.7613 0.8260 37 1 12.9534 3.2612 2.2393 38 1 14.0238 2.1083 4.2275 39 1 7.8344 -2.0102 1.0493 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589686240.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:40:57 Heat of formation + Delta-G solvation = 65.628532 kcal Electronic energy + Delta-G solvation = -22173.409968 eV Core-core repulsion = 18752.652708 eV Total energy + Delta-G solvation = -3420.757260 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.44232 -38.56132 -38.04650 -35.13260 -33.93227 -33.58575 -31.49748 -31.33008 -29.75134 -28.76719 -26.19892 -24.94047 -23.32932 -22.94017 -21.17445 -20.21749 -19.80761 -19.05297 -17.93318 -17.28710 -16.38043 -16.11391 -16.08102 -15.51909 -15.34447 -14.72056 -14.17572 -14.11421 -13.73275 -13.70305 -13.47098 -13.40756 -13.12392 -12.87585 -12.63026 -12.58460 -12.06534 -11.77560 -11.49979 -11.42704 -11.23353 -11.03285 -10.93736 -10.24188 -10.20664 -10.11129 -9.82564 -9.37624 -9.23700 -8.87868 -8.84884 -8.58149 -8.54544 -8.18227 -6.06684 -4.06023 0.24983 0.59251 1.20433 1.25570 1.59524 2.13772 2.70460 2.94302 3.05012 3.24262 3.35608 3.42501 3.52726 3.76955 3.87308 4.47642 4.70046 4.76177 4.85365 4.97611 5.03427 5.14900 5.22324 5.26123 5.28734 5.36746 5.53305 5.68191 5.81589 5.94063 5.96784 5.97455 6.06763 6.13527 6.22123 6.31187 6.41459 6.58426 6.89903 7.22022 7.28897 7.35745 7.49589 7.73451 8.35669 8.48633 8.95652 9.56037 11.06020 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.009490 B = 0.002701 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2949.754638 B =10362.969248 C =12943.035647 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.070 3.930 3 Si 0.877 3.123 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.527 4.527 8 H 0.073 0.927 9 C 0.001 3.999 10 C -0.120 4.120 11 C 0.509 3.491 12 O -0.518 6.518 13 N -0.684 5.684 14 C 0.156 3.844 15 C -0.136 4.136 16 C -0.101 4.101 17 C -0.113 4.113 18 C 0.022 3.978 19 C -0.077 4.077 20 C -0.108 4.108 21 C -0.082 4.082 22 C -0.109 4.109 23 C -0.132 4.132 24 C -0.215 4.215 25 S 0.139 5.861 26 C -0.094 4.094 27 H 0.264 0.736 28 H 0.024 0.976 29 H 0.020 0.980 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.412 0.588 33 H 0.130 0.870 34 H 0.131 0.869 35 H 0.126 0.874 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.169 0.831 39 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.810 -6.934 3.477 28.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.132 4.132 3 Si 0.704 3.296 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.565 4.565 8 H 0.091 0.909 9 C -0.037 4.037 10 C -0.160 4.160 11 C 0.299 3.701 12 O -0.392 6.392 13 N -0.330 5.330 14 C 0.061 3.939 15 C -0.157 4.157 16 C -0.120 4.120 17 C -0.132 4.132 18 C 0.022 3.978 19 C -0.082 4.082 20 C -0.110 4.110 21 C -0.199 4.199 22 C -0.141 4.141 23 C -0.162 4.162 24 C -0.351 4.351 25 S 0.407 5.593 26 C -0.115 4.115 27 H 0.073 0.927 28 H 0.043 0.957 29 H 0.038 0.962 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.248 0.752 33 H 0.148 0.852 34 H 0.149 0.851 35 H 0.144 0.856 36 H 0.165 0.835 37 H 0.164 0.836 38 H 0.186 0.814 39 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 28.371 -7.163 4.528 29.610 hybrid contribution -0.231 1.676 -0.967 1.948 sum 28.140 -5.487 3.561 28.891 Atomic orbital electron populations 1.69907 1.06291 1.27034 1.50832 1.24965 0.94715 0.99235 0.94256 0.86807 0.80613 0.83415 0.78790 1.20198 1.21369 1.18555 1.21075 0.89117 0.94625 1.51633 0.90853 1.19394 0.96612 0.89903 0.97804 1.21717 0.86750 1.03759 1.03795 1.21869 0.91966 0.82406 0.73834 1.90670 1.70362 1.31317 1.46811 1.43886 1.04221 1.10737 1.74203 1.17676 0.83586 0.96178 0.96492 1.21098 0.95059 0.99762 0.99767 1.20809 0.93115 0.98533 0.99543 1.21163 0.99969 0.93893 0.98193 1.15794 0.91020 0.92156 0.98864 1.18826 0.96986 0.94648 0.97749 1.17458 0.98204 0.95317 0.99973 1.20047 1.04970 0.94087 1.00772 1.20787 1.00383 0.91086 1.01823 1.20039 0.99017 1.01565 0.95617 1.25849 1.07739 0.97363 1.04137 1.84326 1.42379 1.09027 1.23548 1.21482 0.91753 0.99481 0.98754 0.92654 0.95718 0.96163 0.89103 0.89084 0.75169 0.85225 0.85099 0.85594 0.83490 0.83596 0.81379 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.74 13.96 55.43 0.77 -26.97 16 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 16 3 Si 0.88 22.45 27.47 -169.99 -4.67 17.79 16 4 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 7 C -0.53 -14.82 9.66 -34.44 -0.33 -15.15 16 8 H 0.07 2.15 7.99 -52.48 -0.42 1.73 16 9 C 0.00 0.02 3.33 -27.88 -0.09 -0.07 16 10 C -0.12 -2.21 5.64 -27.88 -0.16 -2.37 16 11 C 0.51 8.88 7.67 -10.98 -0.08 8.80 16 12 O -0.52 -11.03 13.41 5.55 0.07 -10.96 16 13 N -0.68 -8.93 5.34 -9.90 -0.05 -8.98 16 14 C 0.16 2.06 6.29 -83.75 -0.53 1.53 16 15 C -0.14 -1.39 9.96 -39.28 -0.39 -1.78 16 16 C -0.10 -0.94 10.02 -39.68 -0.40 -1.34 16 17 C -0.11 -1.22 9.76 -39.09 -0.38 -1.60 16 18 C 0.02 0.31 5.74 -106.82 -0.61 -0.31 16 19 C -0.08 -1.10 13.23 -38.86 -0.51 -1.62 16 20 C -0.11 -1.50 13.72 -38.86 -0.53 -2.03 16 21 C -0.08 -0.98 6.31 -38.31 -0.24 -1.22 16 22 C -0.11 -1.15 10.16 -40.43 -0.41 -1.56 16 23 C -0.13 -1.10 10.15 -41.36 -0.42 -1.52 16 24 C -0.21 -1.66 11.21 29.15 0.33 -1.33 16 25 S 0.14 1.30 23.29 -107.50 -2.50 -1.20 16 26 C -0.09 -1.43 8.41 -38.92 -0.33 -1.75 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.02 0.63 7.16 -51.93 -0.37 0.25 16 29 H 0.02 0.51 7.53 -51.93 -0.39 0.12 16 30 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 32 H 0.41 3.82 8.82 -40.82 -0.36 3.46 16 33 H 0.13 0.98 8.06 -52.49 -0.42 0.56 16 34 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 35 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.15 1.42 8.06 -52.49 -0.42 1.00 16 37 H 0.15 0.87 8.06 -52.48 -0.42 0.44 16 38 H 0.17 0.83 8.06 -52.48 -0.42 0.40 16 39 H 0.15 2.58 6.22 -52.49 -0.33 2.25 16 LS Contribution 361.60 15.07 5.45 5.45 Total: -1.00 -34.65 361.60 -10.54 -45.19 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.42 Total: 1.05 kcal Atomic # 6 Polarization: -16.17 SS G_CDS: -5.19 Total: -21.37 kcal Atomic # 7 Polarization: -36.67 SS G_CDS: 0.72 Total: -35.95 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.07 Total: -10.96 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -4.67 Total: 17.79 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.50 Total: -1.20 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.65 -10.54 -45.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589686240.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.821 kcal (2) G-P(sol) polarization free energy of solvation -34.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds