Wall clock time and date at job start Tue Mar 31 2020 14:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99767 * 2 1 4 4 H 1.48499 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47194 * 299.99627 * 3 2 1 6 6 H 1.48505 * 109.47297 * 59.99566 * 3 2 1 7 7 C 1.37868 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47030 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46885 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46814 * 180.02562 * 11 10 9 13 13 C 1.31835 * 119.99656 * 120.00188 * 12 11 10 14 14 N 1.34346 * 127.70753 * 179.97438 * 13 12 11 15 15 C 1.29419 * 116.98125 * 180.02562 * 14 13 12 16 16 C 1.47915 * 120.78450 * 180.02562 * 15 14 13 17 17 C 1.39517 * 120.11530 * 179.70031 * 16 15 14 18 18 C 1.38212 * 119.87751 * 179.72064 * 17 16 15 19 19 F 1.35098 * 119.94000 * 180.29629 * 18 17 16 20 20 C 1.38525 * 120.12052 * 0.57592 * 18 17 16 21 21 C 1.38530 * 120.23581 * 359.69853 * 20 18 17 22 22 F 1.35095 * 119.94205 * 180.02562 * 21 20 18 23 23 C 1.38212 * 120.11803 * 359.97438 * 21 20 18 24 24 N 1.35209 * 118.42703 * 359.97438 * 15 14 13 25 25 H 0.97001 * 127.12480 * 179.97438 * 24 15 14 26 26 S 1.70067 * 105.74347 * 0.23010 * 24 15 14 27 27 H 0.96997 * 120.00209 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47118 * 60.00075 * 9 7 2 29 29 H 1.08999 * 109.47035 * 299.99715 * 9 7 2 30 30 H 1.08996 * 109.46855 * 60.00601 * 10 9 7 31 31 H 1.08999 * 109.47389 * 300.00000 * 10 9 7 32 32 H 1.08991 * 109.47300 * 60.00360 * 11 10 9 33 33 H 1.08999 * 109.47077 * 300.00154 * 11 10 9 34 34 H 1.07995 * 120.05668 * 0.02562 * 17 16 15 35 35 H 1.07997 * 119.88282 * 179.71653 * 20 18 17 36 36 H 1.07993 * 120.06511 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 7 2.4325 -6.1005 0.0005 13 6 2.4262 -6.9726 0.9892 14 7 3.2225 -8.0433 1.1456 15 6 3.0347 -8.7652 2.2032 16 6 3.8643 -9.9627 2.4594 17 6 3.6540 -10.7274 3.6073 18 6 4.4281 -11.8487 3.8389 19 9 4.2216 -12.5935 4.9470 20 6 5.4193 -12.2070 2.9399 21 6 5.6360 -11.4480 1.8015 22 9 6.6039 -11.8032 0.9285 23 6 4.8632 -10.3286 1.5567 24 7 2.0631 -8.3982 3.0688 25 1 1.8154 -8.8437 3.8941 26 16 1.3604 -6.9979 2.4072 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8906 31 1 2.8722 -3.6043 -0.8894 32 1 0.8542 -5.0446 -0.8903 33 1 0.8535 -5.0450 0.8896 34 1 2.8845 -10.4464 4.3109 35 1 6.0249 -13.0814 3.1270 36 1 5.0327 -9.7378 0.6688 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591908049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:48 Heat of formation + Delta-G solvation = -6.175996 kcal Electronic energy + Delta-G solvation = -22807.566715 eV Core-core repulsion = 18861.758998 eV Total energy + Delta-G solvation = -3945.807717 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.076 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.65582 -49.54826 -40.81290 -38.79890 -36.26904 -33.98782 -32.75179 -31.99542 -31.13304 -30.65748 -27.11495 -25.57228 -23.63917 -23.24821 -21.83418 -21.10851 -20.20073 -19.43601 -18.59542 -17.59114 -17.24544 -16.93283 -16.63564 -16.36142 -16.14760 -15.88929 -15.65597 -15.26396 -15.10377 -14.80061 -14.44283 -14.10017 -13.45384 -12.96485 -12.71236 -12.58617 -12.47369 -12.28024 -12.11256 -11.76209 -11.49330 -11.00619 -10.83674 -10.61777 -10.54811 -10.34884 -9.76188 -9.52933 -9.47857 -9.27722 -9.08486 -8.93596 -8.34778 -7.55128 -5.99658 -4.01775 -0.32774 0.26526 0.45233 1.05260 1.42748 2.47533 2.81370 3.00005 3.27579 3.32347 3.39668 3.44780 3.59904 3.85575 3.99766 4.01203 4.26775 4.29787 4.47478 4.75931 5.04621 5.12723 5.24583 5.36098 5.37633 5.48398 5.67932 5.86573 5.99398 6.10538 6.30028 6.60007 6.79732 7.06456 7.11584 7.66300 7.76991 7.82591 7.99740 8.42556 9.04913 9.62288 11.11761 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.002063 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.879609 B =13567.551478 C =14093.679436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.518 4.518 8 H 0.057 0.943 9 C 0.022 3.978 10 C -0.100 4.100 11 C 0.054 3.946 12 N -0.463 5.463 13 C 0.331 3.669 14 N -0.508 5.508 15 C 0.435 3.565 16 C 0.009 3.991 17 C -0.137 4.137 18 C 0.133 3.867 19 F -0.125 7.125 20 C -0.169 4.169 21 C 0.133 3.867 22 F -0.122 7.122 23 C -0.101 4.101 24 N -0.693 5.693 25 H 0.444 0.556 26 S 0.094 5.906 27 H 0.260 0.740 28 H 0.019 0.981 29 H 0.016 0.984 30 H 0.049 0.951 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.145 0.855 35 H 0.156 0.844 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.111 -28.985 10.113 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.556 4.556 8 H 0.075 0.925 9 C -0.015 4.015 10 C -0.139 4.139 11 C -0.077 4.077 12 N -0.187 5.187 13 C -0.060 4.060 14 N -0.238 5.238 15 C 0.153 3.847 16 C 0.004 3.996 17 C -0.159 4.159 18 C 0.113 3.887 19 F -0.103 7.103 20 C -0.190 4.190 21 C 0.114 3.886 22 F -0.100 7.100 23 C -0.122 4.122 24 N -0.425 5.425 25 H 0.289 0.711 26 S 0.216 5.784 27 H 0.069 0.931 28 H 0.037 0.963 29 H 0.035 0.965 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.112 0.888 33 H 0.061 0.939 34 H 0.163 0.837 35 H 0.174 0.826 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 6.910 -27.922 9.102 30.170 hybrid contribution 0.233 0.110 1.189 1.216 sum 7.143 -27.813 10.291 30.504 Atomic orbital electron populations 1.69975 1.06038 1.26511 1.51010 1.25024 0.94872 0.99292 0.95325 0.86523 0.80165 0.83696 0.77561 1.19700 1.20976 1.21026 1.21253 0.93150 0.90852 1.50376 0.92523 1.19106 0.93911 0.91127 0.97402 1.21685 0.99317 0.91384 1.01472 1.22603 0.93305 0.90370 1.01376 1.72089 1.24181 1.04604 1.17855 1.26069 0.92370 0.95114 0.92434 1.67820 1.28548 1.08607 1.18868 1.20882 0.86726 0.92574 0.84470 1.17369 0.95484 0.91947 0.94766 1.21087 1.01583 0.95002 0.98214 1.16878 0.96319 0.90898 0.84601 1.91581 1.94037 1.75070 1.49619 1.21273 1.00366 1.02969 0.94345 1.17074 0.88608 0.94568 0.88380 1.91593 1.59933 1.91234 1.67238 1.21465 0.93672 0.95841 1.01258 1.47224 1.36670 1.30916 1.27727 0.71115 1.86370 1.44182 1.19325 1.28481 0.93050 0.96259 0.96530 0.93204 0.91975 0.88767 0.93882 0.83719 0.82642 0.81574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.89 21.94 29.54 -169.99 -5.02 16.92 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.17 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 8 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 9 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 10 C -0.10 -2.20 5.48 -26.73 -0.15 -2.34 16 11 C 0.05 1.02 6.38 -4.04 -0.03 0.99 16 12 N -0.46 -8.55 10.69 -61.13 -0.65 -9.20 16 13 C 0.33 5.31 8.59 -89.88 -0.77 4.53 16 14 N -0.51 -7.08 9.79 -11.68 -0.11 -7.19 16 15 C 0.44 4.43 7.46 -157.47 -1.17 3.26 16 16 C 0.01 0.07 5.87 -104.98 -0.62 -0.55 16 17 C -0.14 -0.72 9.58 -39.11 -0.37 -1.09 16 18 C 0.13 0.72 7.29 -39.49 -0.29 0.44 16 19 F -0.12 -0.75 17.26 2.25 0.04 -0.71 16 20 C -0.17 -0.89 10.00 -39.37 -0.39 -1.28 16 21 C 0.13 0.89 7.29 -39.48 -0.29 0.60 16 22 F -0.12 -0.93 17.26 2.25 0.04 -0.89 16 23 C -0.10 -0.77 9.57 -39.11 -0.37 -1.14 16 24 N -0.69 -6.02 6.62 31.55 0.21 -5.81 16 25 H 0.44 2.12 7.51 -40.82 -0.31 1.81 16 26 S 0.09 1.21 22.40 -107.50 -2.41 -1.20 16 27 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 33 H 0.04 0.78 6.44 -51.93 -0.33 0.44 16 34 H 0.15 0.40 6.68 -52.49 -0.35 0.05 16 35 H 0.16 0.53 8.06 -52.49 -0.42 0.11 16 36 H 0.17 1.41 7.59 -52.49 -0.40 1.01 16 LS Contribution 338.27 15.07 5.10 5.10 Total: -1.00 -33.10 338.27 -10.55 -43.64 By element: Atomic # 1 Polarization: -0.97 SS G_CDS: -3.47 Total: -4.43 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: -5.00 Total: -9.87 kcal Atomic # 7 Polarization: -48.72 SS G_CDS: 0.18 Total: -48.54 kcal Atomic # 9 Polarization: -1.69 SS G_CDS: 0.08 Total: -1.61 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Atomic # 16 Polarization: 1.21 SS G_CDS: -2.41 Total: -1.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -33.10 -10.55 -43.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591908049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.468 kcal (2) G-P(sol) polarization free energy of solvation -33.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.371 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.644 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds