Wall clock time and date at job start Tue Mar 31 2020 14:35:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 119.99767 * 2 1 4 4 H 1.48499 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47194 * 299.99627 * 3 2 1 6 6 H 1.48505 * 109.47297 * 59.99566 * 3 2 1 7 7 C 1.37868 * 120.00320 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00265 * 180.02562 * 7 2 1 9 9 C 1.50704 * 119.99872 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.47030 * 179.97438 * 9 7 2 11 11 C 1.53004 * 109.46885 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.46814 * 180.02562 * 11 10 9 13 13 C 1.31835 * 119.99656 * 120.00188 * 12 11 10 14 14 N 1.34346 * 127.70753 * 179.97438 * 13 12 11 15 15 C 1.29419 * 116.98125 * 180.02562 * 14 13 12 16 16 C 1.47915 * 120.78450 * 180.02562 * 15 14 13 17 17 C 1.39517 * 120.11530 * 179.70031 * 16 15 14 18 18 C 1.38212 * 119.87751 * 179.72064 * 17 16 15 19 19 F 1.35098 * 119.94000 * 180.29629 * 18 17 16 20 20 C 1.38525 * 120.12052 * 0.57592 * 18 17 16 21 21 C 1.38530 * 120.23581 * 359.69853 * 20 18 17 22 22 F 1.35095 * 119.94205 * 180.02562 * 21 20 18 23 23 C 1.38212 * 120.11803 * 359.97438 * 21 20 18 24 24 N 1.35209 * 118.42703 * 359.97438 * 15 14 13 25 25 H 0.97001 * 127.12480 * 179.97438 * 24 15 14 26 26 S 1.70067 * 105.74347 * 0.23010 * 24 15 14 27 27 H 0.96997 * 120.00209 * 0.02562 * 1 2 3 28 28 H 1.09004 * 109.47118 * 60.00075 * 9 7 2 29 29 H 1.08999 * 109.47035 * 299.99715 * 9 7 2 30 30 H 1.08996 * 109.46855 * 60.00601 * 10 9 7 31 31 H 1.08999 * 109.47389 * 300.00000 * 10 9 7 32 32 H 1.08991 * 109.47300 * 60.00360 * 11 10 9 33 33 H 1.08999 * 109.47077 * 300.00154 * 11 10 9 34 34 H 1.07995 * 120.05668 * 0.02562 * 17 16 15 35 35 H 1.07997 * 119.88282 * 179.71653 * 20 18 17 36 36 H 1.07993 * 120.06511 * 180.02562 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3465 0.0006 5 1 1.8904 2.3965 -1.2126 6 1 1.8903 2.3966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4805 -4.9871 -0.0001 12 7 2.4325 -6.1005 0.0005 13 6 2.4262 -6.9726 0.9892 14 7 3.2225 -8.0433 1.1456 15 6 3.0347 -8.7652 2.2032 16 6 3.8643 -9.9627 2.4594 17 6 3.6540 -10.7274 3.6073 18 6 4.4281 -11.8487 3.8389 19 9 4.2216 -12.5935 4.9470 20 6 5.4193 -12.2070 2.9399 21 6 5.6360 -11.4480 1.8015 22 9 6.6039 -11.8032 0.9285 23 6 4.8632 -10.3286 1.5567 24 7 2.0631 -8.3982 3.0688 25 1 1.8154 -8.8437 3.8941 26 16 1.3604 -6.9979 2.4072 27 1 -0.4850 0.8400 -0.0004 28 1 0.6248 -2.5571 -0.8897 29 1 0.6242 -2.5567 0.8903 30 1 2.8720 -3.6043 0.8906 31 1 2.8722 -3.6043 -0.8894 32 1 0.8542 -5.0446 -0.8903 33 1 0.8535 -5.0450 0.8896 34 1 2.8845 -10.4464 4.3109 35 1 6.0249 -13.0814 3.1270 36 1 5.0327 -9.7378 0.6688 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591908049.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:48 Heat of formation + Delta-G solvation = -26.030290 kcal Electronic energy + Delta-G solvation = -22808.427662 eV Core-core repulsion = 18861.758998 eV Total energy + Delta-G solvation = -3946.668664 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.076 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.11217 -50.09259 -41.65453 -39.47344 -37.64796 -35.67405 -34.26137 -32.78955 -32.38503 -31.43535 -28.75153 -26.66944 -24.98042 -23.99385 -22.91205 -22.15226 -21.90086 -20.37015 -19.33244 -18.51399 -18.24503 -17.92617 -17.49362 -17.16325 -16.81318 -16.65214 -16.56900 -16.39366 -16.28683 -16.14328 -15.60069 -15.27838 -14.57317 -14.19493 -14.00930 -13.63292 -13.35311 -13.24867 -13.14274 -13.02247 -12.84066 -12.76995 -12.53583 -12.34453 -11.96145 -11.58381 -11.53404 -11.30955 -11.11535 -10.56983 -10.15047 -10.05510 -9.97156 -8.70059 -8.21029 -6.32292 -1.00286 -0.50868 -0.22821 0.19662 0.27553 1.39709 1.40162 1.53895 1.61933 1.99557 2.26986 2.40784 2.67540 2.93600 3.11629 3.13957 3.23923 3.57810 3.71698 3.80299 3.96809 4.15918 4.25921 4.37163 4.50387 4.57178 4.74667 4.79114 4.80337 4.91687 5.03737 5.13222 5.48136 5.48963 5.64842 5.67438 5.81414 6.03818 6.22665 6.68702 6.82904 7.36582 8.90730 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.024093 B = 0.002063 C = 0.001986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.879609 B =13567.551478 C =14093.679436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.265 1.265 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.056 0.944 9 C 0.028 3.972 10 C -0.085 4.085 11 C 0.069 3.931 12 N -0.516 5.516 13 C 0.336 3.664 14 N -0.547 5.547 15 C 0.454 3.546 16 C -0.005 4.005 17 C -0.115 4.115 18 C 0.131 3.869 19 F -0.124 7.124 20 C -0.150 4.150 21 C 0.124 3.876 22 F -0.130 7.130 23 C -0.104 4.104 24 N -0.665 5.665 25 H 0.465 0.535 26 S 0.100 5.900 27 H 0.265 0.735 28 H -0.001 1.001 29 H -0.002 1.002 30 H 0.043 0.957 31 H 0.054 0.946 32 H 0.091 0.909 33 H 0.046 0.954 34 H 0.174 0.826 35 H 0.177 0.823 36 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.894 -30.685 12.257 33.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.197 4.197 3 Si 0.790 3.210 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.582 4.582 8 H 0.074 0.926 9 C -0.010 4.010 10 C -0.123 4.123 11 C -0.062 4.062 12 N -0.244 5.244 13 C -0.054 4.054 14 N -0.279 5.279 15 C 0.174 3.826 16 C -0.010 4.010 17 C -0.136 4.136 18 C 0.112 3.888 19 F -0.102 7.102 20 C -0.170 4.170 21 C 0.105 3.895 22 F -0.108 7.108 23 C -0.125 4.125 24 N -0.399 5.399 25 H 0.315 0.685 26 S 0.223 5.777 27 H 0.074 0.926 28 H 0.018 0.982 29 H 0.016 0.984 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.109 0.891 33 H 0.064 0.936 34 H 0.192 0.808 35 H 0.195 0.805 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 7.672 -29.676 11.325 32.677 hybrid contribution 0.012 0.360 0.722 0.807 sum 7.684 -29.317 12.046 32.613 Atomic orbital electron populations 1.70092 1.07650 1.27811 1.51509 1.25963 0.95844 1.03282 0.94612 0.85383 0.78923 0.78681 0.77965 1.18924 1.20151 1.20068 1.21652 0.93432 0.92326 1.50795 0.92562 1.18970 0.94162 0.92390 0.95438 1.21383 0.98220 0.92007 1.00720 1.22218 0.92996 0.89467 1.01490 1.72051 1.25906 1.06089 1.20334 1.26336 0.92137 0.94623 0.92281 1.67824 1.29758 1.09225 1.21137 1.21223 0.86015 0.92197 0.83189 1.17210 0.95939 0.91757 0.96144 1.21284 1.01299 0.93838 0.97209 1.16847 0.96378 0.90960 0.84626 1.91597 1.94025 1.75041 1.49558 1.21485 0.99713 1.02746 0.93052 1.17053 0.88747 0.94761 0.88972 1.91576 1.60286 1.91295 1.67675 1.21402 0.94057 0.96113 1.00966 1.47208 1.35392 1.29307 1.28039 0.68530 1.86365 1.43358 1.20721 1.27222 0.92631 0.98213 0.98367 0.93774 0.92706 0.89057 0.93634 0.80843 0.80535 0.83075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 2 C 0.00 0.05 5.46 84.65 0.46 0.51 16 3 Si 0.97 45.24 29.54 68.60 2.03 47.26 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 7 C -0.54 -32.14 9.11 25.60 0.23 -31.90 16 8 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 9 C 0.03 1.54 4.97 29.85 0.15 1.69 16 10 C -0.08 -3.89 5.48 30.60 0.17 -3.72 16 11 C 0.07 2.73 6.38 86.38 0.55 3.28 16 12 N -0.52 -19.75 10.69 -347.33 -3.71 -23.47 16 13 C 0.34 10.88 8.59 180.09 1.55 12.43 16 14 N -0.55 -15.10 9.79 -190.88 -1.87 -16.97 16 15 C 0.45 8.47 7.46 137.54 1.03 9.49 16 16 C -0.01 -0.07 5.87 -20.10 -0.12 -0.18 16 17 C -0.12 -0.77 9.58 22.57 0.22 -0.56 16 18 C 0.13 0.96 7.29 22.33 0.16 1.12 16 19 F -0.12 -1.03 17.26 44.97 0.78 -0.25 16 20 C -0.15 -1.13 10.00 22.41 0.22 -0.90 16 21 C 0.12 1.45 7.29 22.33 0.16 1.61 16 22 F -0.13 -1.87 17.26 44.97 0.78 -1.09 16 23 C -0.10 -1.47 9.57 22.57 0.22 -1.26 16 24 N -0.67 -9.80 6.62 -54.11 -0.36 -10.15 16 25 H 0.46 2.60 7.51 -92.71 -0.70 1.91 16 26 S 0.10 2.45 22.40 -56.49 -1.27 1.18 16 27 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 28 H 0.00 -0.03 8.14 -2.38 -0.02 -0.05 16 29 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 30 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 31 H 0.05 2.54 8.14 -2.39 -0.02 2.52 16 32 H 0.09 3.50 8.14 -2.39 -0.02 3.48 16 33 H 0.05 1.70 6.44 -2.39 -0.02 1.69 16 34 H 0.17 0.09 6.68 -2.91 -0.02 0.07 16 35 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 36 H 0.15 2.63 7.59 -2.91 -0.02 2.60 16 Total: -1.00 -73.43 338.27 2.11 -71.32 By element: Atomic # 1 Polarization: -3.00 SS G_CDS: 0.45 Total: -2.54 kcal Atomic # 6 Polarization: -13.39 SS G_CDS: 5.00 Total: -8.39 kcal Atomic # 7 Polarization: -101.82 SS G_CDS: -5.66 Total: -107.47 kcal Atomic # 9 Polarization: -2.90 SS G_CDS: 1.55 Total: -1.35 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 2.45 SS G_CDS: -1.27 Total: 1.18 kcal Total: -73.43 2.11 -71.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591908049.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.287 kcal (2) G-P(sol) polarization free energy of solvation -73.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds