Wall clock time and date at job start Tue Mar 31 2020 14:28:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00216 * 2 1 4 4 H 1.48506 * 109.46977 * 240.00534 * 3 2 1 5 5 H 1.48497 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47470 * 120.00362 * 3 2 1 7 7 C 1.37878 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99908 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.88582 * 62.42730 * 9 7 2 11 11 C 1.55155 * 111.00572 * 186.34756 * 9 7 2 12 12 C 1.54330 * 102.94292 * 153.57570 * 11 9 7 13 13 N 1.47026 * 107.26840 * 337.81024 * 12 11 9 14 14 C 1.34780 * 125.64391 * 178.97562 * 13 12 11 15 15 O 1.21276 * 119.99621 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00219 * 359.97438 * 14 13 12 17 17 O 1.42893 * 109.47158 * 180.02562 * 16 14 13 18 18 C 1.35894 * 117.00115 * 179.97438 * 17 16 14 19 19 C 1.38766 * 120.04853 * 359.72523 * 18 17 16 20 20 C 1.38135 * 119.96859 * 179.72099 * 19 18 17 21 21 C 1.38265 * 120.06799 * 0.55388 * 20 19 18 22 22 C 1.38370 * 120.09820 * 359.72119 * 21 20 19 23 23 Cl 1.73603 * 119.98092 * 179.97438 * 22 21 20 24 24 C 1.38276 * 120.02930 * 0.02562 * 22 21 20 25 25 C 1.47420 * 108.70428 * 358.94103 * 13 12 11 26 26 H 0.97000 * 119.99407 * 359.97438 * 1 2 3 27 27 H 0.96700 * 113.99958 * 297.57261 * 10 9 7 28 28 H 1.08998 * 110.71769 * 35.21692 * 11 9 7 29 29 H 1.08991 * 110.72382 * 271.94089 * 11 9 7 30 30 H 1.08998 * 109.88224 * 218.39343 * 12 11 9 31 31 H 1.08998 * 109.88221 * 97.22736 * 12 11 9 32 32 H 1.09008 * 109.46861 * 300.00115 * 16 14 13 33 33 H 1.08997 * 109.46822 * 59.99853 * 16 14 13 34 34 H 1.07998 * 120.01232 * 359.97438 * 19 18 17 35 35 H 1.08002 * 119.96237 * 180.25309 * 20 19 18 36 36 H 1.07997 * 119.94784 * 179.74823 * 21 20 19 37 37 H 1.07995 * 120.03362 * 180.02562 * 24 22 21 38 38 H 1.08997 * 110.36858 * 142.96748 * 25 13 12 39 39 H 1.08999 * 110.36307 * 265.28963 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4606 -2.6311 -1.1838 11 6 2.2197 -3.7006 0.1590 12 6 1.3274 -4.7805 0.8066 13 7 0.2071 -4.0871 1.4593 14 6 -0.8054 -4.6809 2.1216 15 8 -1.6796 -4.0066 2.6236 16 6 -0.8514 -6.1827 2.2383 17 8 -2.0112 -6.5676 2.9788 18 6 -2.2040 -7.8983 3.1757 19 6 -1.2981 -8.8152 2.6615 20 6 -1.4925 -10.1672 2.8676 21 6 -2.5950 -10.6085 3.5759 22 6 -3.5030 -9.6970 4.0850 23 17 -4.8865 -10.2545 4.9732 24 6 -3.3096 -8.3424 3.8856 25 6 0.3754 -2.6348 1.2701 26 1 -0.4849 0.8401 0.0004 27 1 -0.2254 -1.9558 -1.2758 28 1 3.0501 -3.4418 0.8158 29 1 2.5844 -4.0336 -0.8126 30 1 1.8997 -5.3390 1.5472 31 1 0.9487 -5.4569 0.0404 32 1 -0.8939 -6.6234 1.2422 33 1 0.0424 -6.5345 2.7534 34 1 -0.4393 -8.4717 2.1040 35 1 -0.7853 -10.8805 2.4708 36 1 -2.7472 -11.6662 3.7323 37 1 -4.0181 -7.6309 4.2832 38 1 -0.5925 -2.1576 1.1165 39 1 0.8832 -2.1966 2.1293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592837801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:56 Heat of formation + Delta-G solvation = -97.076988 kcal Electronic energy + Delta-G solvation = -24634.422384 eV Core-core repulsion = 20761.423962 eV Total energy + Delta-G solvation = -3872.998422 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55383 -39.39228 -37.95698 -37.06524 -36.44606 -34.36296 -32.29267 -31.42425 -30.60003 -30.18202 -28.64975 -27.50811 -24.99847 -23.21616 -22.83215 -22.17854 -19.78832 -18.96347 -18.69970 -17.26628 -16.79623 -16.44959 -16.43852 -16.01956 -15.29596 -15.12626 -14.89334 -14.71576 -14.30985 -13.96960 -13.72914 -13.23250 -13.13624 -13.06610 -12.90886 -12.16957 -12.06892 -11.96656 -11.73916 -11.52777 -11.50082 -11.18631 -11.10040 -11.06686 -10.91735 -10.71434 -10.54454 -10.27752 -9.50362 -9.41591 -9.17100 -8.75063 -8.54502 -8.46511 -7.94001 -6.33179 -4.43462 0.80785 1.04153 1.73082 2.66194 2.92601 3.18904 3.25367 3.26498 3.32278 3.76519 4.22171 4.40389 4.65113 4.67839 4.77867 4.88014 4.94678 4.97426 5.00238 5.10121 5.26804 5.49833 5.52403 5.67400 5.83061 5.89217 5.95831 5.99998 6.03731 6.21335 6.39186 6.61627 6.75486 6.82338 7.08899 7.16642 7.27325 7.68226 7.94308 8.03476 8.53836 8.60859 9.22668 9.31586 10.73912 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.032635 B = 0.002291 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.771794 B =12216.851395 C =12778.410542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.072 3.928 3 Si 0.905 3.095 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.540 4.540 8 H 0.067 0.933 9 C 0.249 3.751 10 O -0.583 6.583 11 C -0.117 4.117 12 C 0.099 3.901 13 N -0.607 5.607 14 C 0.522 3.478 15 O -0.527 6.527 16 C 0.045 3.955 17 O -0.283 6.283 18 C 0.149 3.851 19 C -0.208 4.208 20 C -0.065 4.065 21 C -0.154 4.154 22 C 0.005 3.995 23 Cl -0.065 7.065 24 C -0.144 4.144 25 C 0.096 3.904 26 H 0.272 0.728 27 H 0.382 0.618 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.136 0.864 35 H 0.136 0.864 36 H 0.134 0.866 37 H 0.144 0.856 38 H 0.088 0.912 39 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.490 -19.829 5.273 20.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.132 4.132 3 Si 0.732 3.268 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.578 4.578 8 H 0.085 0.915 9 C 0.208 3.792 10 O -0.392 6.392 11 C -0.155 4.155 12 C -0.024 4.024 13 N -0.341 5.341 14 C 0.308 3.692 15 O -0.404 6.404 16 C -0.033 4.033 17 O -0.195 6.195 18 C 0.102 3.898 19 C -0.227 4.227 20 C -0.084 4.084 21 C -0.173 4.173 22 C -0.022 4.022 23 Cl -0.036 7.036 24 C -0.164 4.164 25 C -0.024 4.024 26 H 0.082 0.918 27 H 0.232 0.768 28 H 0.098 0.902 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.152 0.848 37 H 0.161 0.839 38 H 0.107 0.893 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.039 -19.759 5.636 20.648 hybrid contribution 0.180 1.202 0.089 1.218 sum -1.858 -18.557 5.725 19.509 Atomic orbital electron populations 1.69699 1.06005 1.28155 1.49165 1.25089 0.95056 0.99828 0.93260 0.86446 0.79522 0.82036 0.78818 1.19974 1.21061 1.19999 1.21400 0.93619 0.89966 1.52831 0.91499 1.19625 0.86570 0.91705 0.81277 1.86101 1.51554 1.57202 1.44297 1.22618 0.97554 0.95020 1.00297 1.22106 0.88210 0.96254 0.95871 1.48692 1.22839 1.10282 1.52322 1.19416 0.81964 0.88113 0.79721 1.90736 1.37270 1.65248 1.47103 1.22599 0.88082 0.95337 0.97301 1.86190 1.43744 1.19512 1.70056 1.18868 0.93746 0.83010 0.94152 1.21439 1.01584 0.93926 1.05729 1.20893 0.96391 0.94992 0.96095 1.20945 0.95136 0.99611 1.01567 1.20551 0.90692 0.93056 0.97914 1.98380 1.41723 1.89452 1.74017 1.20232 0.98699 0.94225 1.03210 1.23356 1.03006 0.75939 1.00133 0.91841 0.76798 0.90203 0.90527 0.92463 0.92005 0.89006 0.89144 0.84621 0.84653 0.84834 0.83852 0.89318 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.30 10.69 55.43 0.59 -22.70 16 2 C 0.07 1.81 5.29 -17.82 -0.09 1.72 16 3 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 4 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 5 H -0.29 -6.30 7.11 56.52 0.40 -5.89 16 6 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 7 C -0.54 -13.52 8.27 -34.44 -0.28 -13.80 16 8 H 0.07 1.63 7.79 -52.49 -0.41 1.22 16 9 C 0.25 5.72 0.87 -89.63 -0.08 5.64 16 10 O -0.58 -14.19 13.16 -35.23 -0.46 -14.66 16 11 C -0.12 -2.13 6.13 -24.89 -0.15 -2.28 16 12 C 0.10 1.53 6.49 -3.06 -0.02 1.51 16 13 N -0.61 -11.67 3.33 -170.52 -0.57 -12.24 16 14 C 0.52 9.99 7.93 -10.98 -0.09 9.90 16 15 O -0.53 -12.47 16.76 -14.35 -0.24 -12.71 16 16 C 0.05 0.62 4.41 36.01 0.16 0.78 16 17 O -0.28 -4.34 9.67 -39.32 -0.38 -4.72 16 18 C 0.15 1.86 6.69 -39.22 -0.26 1.59 16 19 C -0.21 -2.02 9.04 -39.42 -0.36 -2.38 16 20 C -0.07 -0.53 10.04 -39.61 -0.40 -0.93 16 21 C -0.15 -1.33 9.83 -39.52 -0.39 -1.72 16 22 C 0.00 0.05 6.32 -39.52 -0.25 -0.20 16 23 Cl -0.06 -0.62 28.95 -51.86 -1.50 -2.12 16 24 C -0.14 -1.71 9.77 -39.40 -0.38 -2.10 16 25 C 0.10 2.22 5.38 -2.53 -0.01 2.21 16 26 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 27 H 0.38 9.64 7.56 45.56 0.34 9.98 16 28 H 0.08 1.36 8.03 -51.93 -0.42 0.95 16 29 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.09 1.04 7.65 -51.92 -0.40 0.65 16 33 H 0.09 0.97 7.68 -51.93 -0.40 0.57 16 34 H 0.14 1.06 6.30 -52.49 -0.33 0.73 16 35 H 0.14 0.72 8.06 -52.49 -0.42 0.29 16 36 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.14 1.69 8.06 -52.49 -0.42 1.26 16 38 H 0.09 2.33 7.33 -51.93 -0.38 1.95 16 39 H 0.06 1.51 8.03 -51.93 -0.42 1.09 16 LS Contribution 347.13 15.07 5.23 5.23 Total: -1.00 -29.85 347.13 -9.04 -38.89 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: -4.08 Total: 10.22 kcal Atomic # 6 Polarization: 2.55 SS G_CDS: -2.61 Total: -0.06 kcal Atomic # 7 Polarization: -34.97 SS G_CDS: 0.03 Total: -34.95 kcal Atomic # 8 Polarization: -31.00 SS G_CDS: -1.08 Total: -32.09 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 17 Polarization: -0.62 SS G_CDS: -1.50 Total: -2.12 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -29.85 -9.04 -38.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.191 kcal (2) G-P(sol) polarization free energy of solvation -29.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds