Wall clock time and date at job start Tue Mar 31 2020 14:28:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00216 * 2 1 4 4 H 1.48506 * 109.46977 * 240.00534 * 3 2 1 5 5 H 1.48497 * 109.47280 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47470 * 120.00362 * 3 2 1 7 7 C 1.37878 * 120.00029 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00261 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99908 * 359.97438 * 7 2 1 10 10 O 1.42906 * 110.88582 * 62.42730 * 9 7 2 11 11 C 1.55155 * 111.00572 * 186.34756 * 9 7 2 12 12 C 1.54330 * 102.94292 * 153.57570 * 11 9 7 13 13 N 1.47026 * 107.26840 * 337.81024 * 12 11 9 14 14 C 1.34780 * 125.64391 * 178.97562 * 13 12 11 15 15 O 1.21276 * 119.99621 * 179.97438 * 14 13 12 16 16 C 1.50700 * 120.00219 * 359.97438 * 14 13 12 17 17 O 1.42893 * 109.47158 * 180.02562 * 16 14 13 18 18 C 1.35894 * 117.00115 * 179.97438 * 17 16 14 19 19 C 1.38766 * 120.04853 * 359.72523 * 18 17 16 20 20 C 1.38135 * 119.96859 * 179.72099 * 19 18 17 21 21 C 1.38265 * 120.06799 * 0.55388 * 20 19 18 22 22 C 1.38370 * 120.09820 * 359.72119 * 21 20 19 23 23 Cl 1.73603 * 119.98092 * 179.97438 * 22 21 20 24 24 C 1.38276 * 120.02930 * 0.02562 * 22 21 20 25 25 C 1.47420 * 108.70428 * 358.94103 * 13 12 11 26 26 H 0.97000 * 119.99407 * 359.97438 * 1 2 3 27 27 H 0.96700 * 113.99958 * 297.57261 * 10 9 7 28 28 H 1.08998 * 110.71769 * 35.21692 * 11 9 7 29 29 H 1.08991 * 110.72382 * 271.94089 * 11 9 7 30 30 H 1.08998 * 109.88224 * 218.39343 * 12 11 9 31 31 H 1.08998 * 109.88221 * 97.22736 * 12 11 9 32 32 H 1.09008 * 109.46861 * 300.00115 * 16 14 13 33 33 H 1.08997 * 109.46822 * 59.99853 * 16 14 13 34 34 H 1.07998 * 120.01232 * 359.97438 * 19 18 17 35 35 H 1.08002 * 119.96237 * 180.25309 * 20 19 18 36 36 H 1.07997 * 119.94784 * 179.74823 * 21 20 19 37 37 H 1.07995 * 120.03362 * 180.02562 * 24 22 21 38 38 H 1.08997 * 110.36858 * 142.96748 * 25 13 12 39 39 H 1.08999 * 110.36307 * 265.28963 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2843 2.7464 -0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0045 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 8 0.4606 -2.6311 -1.1838 11 6 2.2197 -3.7006 0.1590 12 6 1.3274 -4.7805 0.8066 13 7 0.2071 -4.0871 1.4593 14 6 -0.8054 -4.6809 2.1216 15 8 -1.6796 -4.0066 2.6236 16 6 -0.8514 -6.1827 2.2383 17 8 -2.0112 -6.5676 2.9788 18 6 -2.2040 -7.8983 3.1757 19 6 -1.2981 -8.8152 2.6615 20 6 -1.4925 -10.1672 2.8676 21 6 -2.5950 -10.6085 3.5759 22 6 -3.5030 -9.6970 4.0850 23 17 -4.8865 -10.2545 4.9732 24 6 -3.3096 -8.3424 3.8856 25 6 0.3754 -2.6348 1.2701 26 1 -0.4849 0.8401 0.0004 27 1 -0.2254 -1.9558 -1.2758 28 1 3.0501 -3.4418 0.8158 29 1 2.5844 -4.0336 -0.8126 30 1 1.8997 -5.3390 1.5472 31 1 0.9487 -5.4569 0.0404 32 1 -0.8939 -6.6234 1.2422 33 1 0.0424 -6.5345 2.7534 34 1 -0.4393 -8.4717 2.1040 35 1 -0.7853 -10.8805 2.4708 36 1 -2.7472 -11.6662 3.7323 37 1 -4.0181 -7.6309 4.2832 38 1 -0.5925 -2.1576 1.1165 39 1 0.8832 -2.1966 2.1293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592837801.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:28:55 Heat of formation + Delta-G solvation = -116.537640 kcal Electronic energy + Delta-G solvation = -24635.266261 eV Core-core repulsion = 20761.423962 eV Total energy + Delta-G solvation = -3873.842299 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57721 -40.72888 -39.13560 -38.39208 -37.24778 -36.08554 -34.23814 -32.37216 -31.88136 -31.09212 -29.97205 -28.99902 -26.72708 -24.37586 -23.78510 -23.13280 -21.49496 -20.35362 -19.59783 -19.08827 -18.12013 -17.58236 -17.41419 -17.04456 -16.92544 -16.32633 -16.22196 -16.05463 -15.69330 -14.94435 -14.77396 -14.66182 -14.63098 -14.24600 -14.21543 -13.52685 -13.51387 -13.31595 -12.82975 -12.81319 -12.79814 -12.52971 -12.34438 -12.29912 -12.27597 -12.08319 -11.93645 -11.89366 -11.20418 -10.99383 -10.65870 -10.31501 -9.90887 -9.54011 -9.34046 -8.25514 -6.42619 0.08117 0.29610 0.96303 1.42217 1.43687 1.48532 1.51604 1.55292 2.36943 2.57006 2.59679 3.00958 3.37085 3.75422 3.79263 3.91211 4.01523 4.05774 4.11574 4.12597 4.20064 4.28335 4.39558 4.41190 4.67941 4.74270 4.77245 5.05198 5.10644 5.11594 5.24589 5.26622 5.32598 5.39899 5.46944 5.54816 5.75383 6.06439 6.22897 6.56300 6.67264 7.07429 7.26163 7.34240 8.79198 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.032635 B = 0.002291 C = 0.002191 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 857.771794 B =12216.851395 C =12778.410542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.025 3.975 3 Si 0.962 3.038 4 H -0.269 1.269 5 H -0.289 1.289 6 H -0.269 1.269 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.231 3.769 10 O -0.587 6.587 11 C -0.113 4.113 12 C 0.098 3.902 13 N -0.609 5.609 14 C 0.512 3.488 15 O -0.589 6.589 16 C 0.058 3.942 17 O -0.320 6.320 18 C 0.123 3.877 19 C -0.203 4.203 20 C -0.057 4.057 21 C -0.149 4.149 22 C -0.005 4.005 23 Cl -0.065 7.065 24 C -0.167 4.167 25 C 0.108 3.892 26 H 0.268 0.732 27 H 0.372 0.628 28 H 0.090 0.910 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.131 0.869 34 H 0.162 0.838 35 H 0.174 0.826 36 H 0.157 0.843 37 H 0.127 0.873 38 H 0.043 0.957 39 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.958 -23.113 4.825 23.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.176 4.176 3 Si 0.788 3.212 4 H -0.194 1.194 5 H -0.214 1.214 6 H -0.194 1.194 7 C -0.593 4.593 8 H 0.089 0.911 9 C 0.190 3.810 10 O -0.394 6.394 11 C -0.150 4.150 12 C -0.023 4.023 13 N -0.342 5.342 14 C 0.300 3.700 15 O -0.470 6.470 16 C -0.019 4.019 17 O -0.234 6.234 18 C 0.078 3.922 19 C -0.221 4.221 20 C -0.075 4.075 21 C -0.167 4.167 22 C -0.032 4.032 23 Cl -0.036 7.036 24 C -0.186 4.186 25 C -0.015 4.015 26 H 0.077 0.923 27 H 0.221 0.779 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.105 0.895 32 H 0.141 0.859 33 H 0.148 0.852 34 H 0.180 0.820 35 H 0.192 0.808 36 H 0.175 0.825 37 H 0.145 0.855 38 H 0.062 0.938 39 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.450 -23.095 5.175 23.672 hybrid contribution -0.603 2.163 0.243 2.259 sum -0.153 -20.932 5.418 21.623 Atomic orbital electron populations 1.69838 1.07218 1.28405 1.50129 1.25841 0.95710 1.02909 0.93182 0.85536 0.78287 0.78399 0.78992 1.19357 1.21448 1.19428 1.21796 0.94032 0.91224 1.52288 0.91104 1.19888 0.87200 0.93451 0.80442 1.86090 1.51413 1.56744 1.45161 1.22635 0.97194 0.93563 1.01636 1.22390 0.86873 0.95480 0.97550 1.48724 1.24162 1.08870 1.52480 1.20498 0.80626 0.90637 0.78191 1.90701 1.39489 1.67232 1.49544 1.22574 0.89328 0.90522 0.99505 1.86124 1.44698 1.21571 1.70970 1.19061 0.95025 0.82292 0.95848 1.21756 1.01375 0.94083 1.04934 1.21355 0.96372 0.95009 0.94748 1.21333 0.94551 1.00484 1.00362 1.20683 0.91314 0.92774 0.98449 1.98376 1.41896 1.89267 1.74083 1.20275 0.99083 0.94911 1.04352 1.22856 1.00347 0.78605 0.99677 0.92267 0.77926 0.89112 0.89306 0.87625 0.89452 0.85917 0.85175 0.82044 0.80833 0.82505 0.85468 0.93814 0.93741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.88 10.69 21.45 0.23 -49.65 16 2 C 0.02 1.26 5.29 84.65 0.45 1.71 16 3 Si 0.96 41.26 29.54 68.60 2.03 43.28 16 4 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 5 H -0.29 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -11.21 7.11 99.48 0.71 -10.51 16 7 C -0.56 -27.97 8.27 25.60 0.21 -27.76 16 8 H 0.07 3.42 7.79 -2.91 -0.02 3.40 16 9 C 0.23 10.61 0.87 -10.15 -0.01 10.60 16 10 O -0.59 -28.93 13.16 -148.98 -1.96 -30.89 16 11 C -0.11 -3.80 6.13 31.78 0.19 -3.61 16 12 C 0.10 2.67 6.49 86.73 0.56 3.23 16 13 N -0.61 -22.90 3.33 -811.80 -2.70 -25.60 16 14 C 0.51 19.45 7.93 87.66 0.69 20.14 16 15 O -0.59 -29.25 16.76 16.02 0.27 -28.98 16 16 C 0.06 1.44 4.41 71.24 0.31 1.75 16 17 O -0.32 -9.64 9.67 -73.32 -0.71 -10.35 16 18 C 0.12 2.90 6.69 22.50 0.15 3.05 16 19 C -0.20 -3.15 9.04 22.37 0.20 -2.95 16 20 C -0.06 -0.66 10.04 22.25 0.22 -0.44 16 21 C -0.15 -2.09 9.83 22.31 0.22 -1.87 16 22 C -0.01 -0.11 6.32 22.31 0.14 0.03 16 23 Cl -0.07 -1.20 28.95 -2.72 -0.08 -1.28 16 24 C -0.17 -3.97 9.77 22.39 0.22 -3.75 16 25 C 0.11 5.14 5.38 86.86 0.47 5.60 16 26 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.37 19.61 7.56 -74.06 -0.56 19.05 16 28 H 0.09 2.84 8.03 -2.39 -0.02 2.82 16 29 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 31 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.12 2.26 7.65 -2.38 -0.02 2.24 16 33 H 0.13 2.16 7.68 -2.39 -0.02 2.14 16 34 H 0.16 1.58 6.30 -2.91 -0.02 1.57 16 35 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 36 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 37 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 38 H 0.04 2.45 7.33 -2.39 -0.02 2.43 16 39 H 0.04 2.22 8.03 -2.39 -0.02 2.20 16 Total: -1.00 -70.84 347.13 1.64 -69.20 By element: Atomic # 1 Polarization: 27.98 SS G_CDS: 0.53 Total: 28.50 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: 4.04 Total: 5.76 kcal Atomic # 7 Polarization: -72.77 SS G_CDS: -2.47 Total: -75.25 kcal Atomic # 8 Polarization: -67.82 SS G_CDS: -2.40 Total: -70.23 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.28 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -70.84 1.64 -69.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592837801.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.338 kcal (2) G-P(sol) polarization free energy of solvation -70.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds