Wall clock time and date at job start Tue Mar 31 2020 14:44:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00424 * 2 1 4 4 H 1.48498 * 109.47564 * 179.97438 * 3 2 1 5 5 H 1.48513 * 109.47177 * 299.99785 * 3 2 1 6 6 H 1.48497 * 109.47320 * 59.99713 * 3 2 1 7 7 C 1.37877 * 119.99852 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00332 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00164 * 0.02562 * 7 2 1 10 10 O 1.42901 * 110.91451 * 303.90366 * 9 7 2 11 11 C 1.55153 * 111.00734 * 179.97438 * 9 7 2 12 12 C 1.54323 * 103.10236 * 206.33593 * 11 9 7 13 13 N 1.47486 * 107.03754 * 22.24109 * 12 11 9 14 14 C 1.34778 * 125.59520 * 181.08732 * 13 12 11 15 15 O 1.21278 * 119.99822 * 179.97438 * 14 13 12 16 16 C 1.50693 * 119.99827 * 359.92993 * 14 13 12 17 17 O 1.42905 * 109.47200 * 180.02562 * 16 14 13 18 18 C 1.35915 * 116.99924 * 180.02562 * 17 16 14 19 19 C 1.38724 * 120.04661 * 359.71928 * 18 17 16 20 20 C 1.38144 * 119.95534 * 179.77015 * 19 18 17 21 21 C 1.38361 * 120.04581 * 0.50664 * 20 19 18 22 22 Cl 1.73602 * 119.95993 * 179.76460 * 21 20 19 23 23 C 1.38368 * 120.08429 * 359.75177 * 21 20 19 24 24 C 1.38147 * 120.04073 * 359.97438 * 23 21 20 25 25 C 1.47428 * 108.75727 * 1.02624 * 13 12 11 26 26 H 0.97001 * 119.99643 * 0.02562 * 1 2 3 27 27 H 0.96703 * 113.99966 * 56.09313 * 10 9 7 28 28 H 1.09002 * 110.72030 * 324.78859 * 11 9 7 29 29 H 1.09003 * 110.72184 * 87.88510 * 11 9 7 30 30 H 1.09000 * 109.88693 * 141.69901 * 12 11 9 31 31 H 1.09005 * 109.88012 * 262.86516 * 12 11 9 32 32 H 1.09000 * 109.47129 * 299.99930 * 16 14 13 33 33 H 1.09000 * 109.47692 * 59.99857 * 16 14 13 34 34 H 1.07999 * 120.01892 * 0.02845 * 19 18 17 35 35 H 1.08002 * 119.97643 * 180.25057 * 20 19 18 36 36 H 1.08004 * 119.97736 * 180.02562 * 23 21 20 37 37 H 1.08003 * 120.01836 * 179.97438 * 24 23 21 38 38 H 1.09000 * 110.36462 * 217.05803 * 25 13 12 39 39 H 1.08998 * 110.36847 * 94.73011 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 8 0.3506 -2.5684 1.1081 11 6 2.2272 -3.7051 0.0005 12 6 1.4004 -4.8246 -0.6663 13 7 0.3469 -4.1679 -1.4626 14 6 -0.6003 -4.7999 -2.1836 15 8 -1.4210 -4.1565 -2.8028 16 6 -0.6390 -6.3058 -2.2211 17 8 -1.7243 -6.7341 -3.0463 18 6 -1.9010 -8.0743 -3.1868 19 6 -1.0438 -8.9587 -2.5484 20 6 -1.2281 -10.3206 -2.6888 21 6 -2.2603 -10.8028 -3.4739 22 17 -2.4860 -12.5146 -3.6536 23 6 -3.1131 -9.9223 -4.1158 24 6 -2.9355 -8.5597 -3.9734 25 6 0.5002 -2.7068 -1.3385 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2789 -1.8355 1.1497 28 1 3.1173 -3.4807 -0.5873 29 1 2.4991 -3.9812 1.0194 30 1 2.0408 -5.4223 -1.3149 31 1 0.9492 -5.4575 0.0980 32 1 0.2984 -6.6833 -2.6295 33 1 -0.7763 -6.6911 -1.2107 34 1 -0.2356 -8.5827 -1.9387 35 1 -0.5634 -11.0094 -2.1886 36 1 -3.9185 -10.3005 -4.7279 37 1 -3.6011 -7.8727 -4.4749 38 1 -0.4767 -2.2245 -1.3044 39 1 1.0888 -2.3153 -2.1681 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592842242.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:03 Heat of formation + Delta-G solvation = -117.051072 kcal Electronic energy + Delta-G solvation = -24584.172553 eV Core-core repulsion = 20710.307990 eV Total energy + Delta-G solvation = -3873.864563 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.56722 -40.71223 -39.12420 -38.38294 -37.10854 -36.10206 -34.16338 -32.40951 -32.03630 -31.03091 -29.92770 -28.97756 -26.72830 -24.41811 -23.78676 -23.11091 -21.47162 -20.36593 -19.55168 -19.15117 -18.09709 -17.63556 -17.56922 -17.12088 -16.97862 -16.34306 -16.17635 -15.86071 -15.48629 -14.91524 -14.76553 -14.66052 -14.54991 -14.22925 -14.18966 -13.51253 -13.50039 -13.34281 -13.20282 -12.89078 -12.83715 -12.52373 -12.33561 -12.30512 -12.19509 -12.08519 -11.74301 -11.71661 -11.26781 -10.98572 -10.66434 -10.32917 -10.14836 -9.53668 -9.19208 -8.27558 -6.44138 0.15904 0.21195 1.17860 1.39102 1.43675 1.46925 1.50629 1.54707 2.36133 2.54302 2.57761 2.99105 3.35763 3.73084 3.79972 3.82230 3.94277 4.01424 4.13550 4.14322 4.24418 4.33694 4.38658 4.48980 4.67960 4.73117 4.91117 4.92878 5.01672 5.10358 5.18224 5.22689 5.26286 5.40549 5.45650 5.53079 5.76101 6.02704 6.22223 6.55330 6.66217 7.07111 7.28909 7.37570 8.78106 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.038141 B = 0.002196 C = 0.002124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 733.936743 B =12749.414872 C =13179.510230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.023 3.977 3 Si 0.965 3.035 4 H -0.261 1.261 5 H -0.285 1.285 6 H -0.281 1.281 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.230 3.770 10 O -0.590 6.590 11 C -0.114 4.114 12 C 0.099 3.901 13 N -0.609 5.609 14 C 0.512 3.488 15 O -0.588 6.588 16 C 0.057 3.943 17 O -0.317 6.317 18 C 0.117 3.883 19 C -0.196 4.196 20 C -0.067 4.067 21 C -0.084 4.084 22 Cl -0.070 7.070 23 C -0.069 4.069 24 C -0.152 4.152 25 C 0.106 3.894 26 H 0.270 0.730 27 H 0.377 0.623 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.107 0.893 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.121 0.879 34 H 0.163 0.837 35 H 0.159 0.841 36 H 0.157 0.843 37 H 0.140 0.860 38 H 0.038 0.962 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.763 -22.323 -4.418 22.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.178 4.178 3 Si 0.790 3.210 4 H -0.185 1.185 5 H -0.211 1.211 6 H -0.207 1.207 7 C -0.591 4.591 8 H 0.091 0.909 9 C 0.190 3.810 10 O -0.399 6.399 11 C -0.151 4.151 12 C -0.022 4.022 13 N -0.342 5.342 14 C 0.301 3.699 15 O -0.469 6.469 16 C -0.021 4.021 17 O -0.230 6.230 18 C 0.071 3.929 19 C -0.215 4.215 20 C -0.085 4.085 21 C -0.110 4.110 22 Cl -0.041 7.041 23 C -0.087 4.087 24 C -0.171 4.171 25 C -0.017 4.017 26 H 0.079 0.921 27 H 0.228 0.772 28 H 0.109 0.891 29 H 0.106 0.894 30 H 0.125 0.875 31 H 0.104 0.896 32 H 0.147 0.853 33 H 0.139 0.861 34 H 0.180 0.820 35 H 0.177 0.823 36 H 0.175 0.825 37 H 0.158 0.842 38 H 0.056 0.944 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.352 -22.465 -4.754 22.965 hybrid contribution -0.314 1.891 -0.146 1.922 sum 0.038 -20.574 -4.900 21.150 Atomic orbital electron populations 1.69687 1.07271 1.28438 1.50567 1.25856 0.95732 1.03002 0.93162 0.85396 0.79267 0.78912 0.77390 1.18518 1.21072 1.20671 1.21893 0.94143 0.91182 1.51906 0.90945 1.19885 0.86277 0.93540 0.81309 1.86044 1.51114 1.52518 1.50258 1.22640 0.97474 0.93235 1.01790 1.22469 0.88854 0.95880 0.95010 1.48811 1.29946 1.08420 1.47038 1.20486 0.80129 0.90470 0.78815 1.90696 1.40840 1.69229 1.46160 1.22566 0.91639 0.90118 0.97774 1.86149 1.49972 1.20732 1.66181 1.19429 0.95642 0.81864 0.95916 1.21509 1.02306 0.93085 1.04555 1.21118 0.96111 0.95178 0.96142 1.20967 1.00534 0.85145 1.04377 1.98365 1.96827 1.12059 1.96886 1.21033 0.98741 0.90862 0.98098 1.20578 0.99012 0.95588 1.01889 1.22896 0.99911 0.78461 1.00455 0.92061 0.77246 0.89079 0.89412 0.87510 0.89552 0.85269 0.86093 0.81960 0.82316 0.82545 0.84217 0.94376 0.93346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.68 10.71 21.45 0.23 -49.45 16 2 C 0.02 1.17 5.29 84.66 0.45 1.62 16 3 Si 0.96 41.03 29.54 68.60 2.03 43.06 16 4 H -0.26 -10.60 7.11 99.48 0.71 -9.89 16 5 H -0.28 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 7 C -0.55 -27.76 8.25 25.60 0.21 -27.54 16 8 H 0.07 3.49 7.76 -2.91 -0.02 3.46 16 9 C 0.23 10.64 0.89 -10.15 -0.01 10.63 16 10 O -0.59 -29.57 13.18 -148.98 -1.96 -31.53 16 11 C -0.11 -3.85 6.12 31.78 0.19 -3.66 16 12 C 0.10 2.70 6.52 86.64 0.56 3.26 16 13 N -0.61 -22.81 3.34 -810.60 -2.71 -25.52 16 14 C 0.51 19.27 7.93 87.65 0.69 19.97 16 15 O -0.59 -28.79 16.75 16.01 0.27 -28.52 16 16 C 0.06 1.38 4.41 71.23 0.31 1.70 16 17 O -0.32 -9.19 9.67 -73.55 -0.71 -9.90 16 18 C 0.12 2.63 6.69 22.50 0.15 2.78 16 19 C -0.20 -3.21 9.04 22.36 0.20 -3.01 16 20 C -0.07 -0.99 9.82 22.28 0.22 -0.77 16 21 C -0.08 -1.37 6.32 22.33 0.14 -1.23 16 22 Cl -0.07 -1.06 28.95 -2.72 -0.08 -1.14 16 23 C -0.07 -1.16 9.82 22.28 0.22 -0.94 16 24 C -0.15 -3.14 9.99 22.36 0.22 -2.92 16 25 C 0.11 5.00 5.62 86.86 0.49 5.49 16 26 H 0.27 14.00 8.31 -92.71 -0.77 13.23 16 27 H 0.38 20.29 6.93 -74.06 -0.51 19.78 16 28 H 0.09 2.84 8.01 -2.39 -0.02 2.82 16 29 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.09 2.00 8.14 -2.38 -0.02 1.98 16 32 H 0.13 2.14 7.65 -2.39 -0.02 2.12 16 33 H 0.12 2.25 7.67 -2.39 -0.02 2.23 16 34 H 0.16 1.77 6.30 -2.91 -0.02 1.75 16 35 H 0.16 1.56 8.06 -2.91 -0.02 1.54 16 36 H 0.16 1.96 8.06 -2.91 -0.02 1.94 16 37 H 0.14 2.83 8.06 -2.91 -0.02 2.80 16 38 H 0.04 2.12 7.64 -2.39 -0.02 2.10 16 39 H 0.05 2.36 8.03 -2.39 -0.02 2.35 16 Total: -1.00 -68.99 347.09 1.70 -67.29 By element: Atomic # 1 Polarization: 29.75 SS G_CDS: 0.57 Total: 30.32 kcal Atomic # 6 Polarization: 1.32 SS G_CDS: 4.06 Total: 5.38 kcal Atomic # 7 Polarization: -72.49 SS G_CDS: -2.48 Total: -74.96 kcal Atomic # 8 Polarization: -67.55 SS G_CDS: -2.41 Total: -69.95 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -68.99 1.70 -67.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592842242.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.760 kcal (2) G-P(sol) polarization free energy of solvation -68.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds