Wall clock time and date at job start Tue Mar 31 2020 14:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47271 * 300.00246 * 3 2 1 6 6 H 1.48499 * 109.47118 * 60.00004 * 3 2 1 7 7 C 1.37877 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99790 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64142 * 298.31333 * 9 7 2 11 11 C 1.55154 * 110.71804 * 174.97658 * 9 7 2 12 12 C 1.54910 * 101.58031 * 206.13347 * 11 9 7 13 13 N 1.47426 * 104.83209 * 37.01037 * 12 11 9 14 14 C 1.34775 * 125.64777 * 155.89013 * 13 12 11 15 15 O 1.21276 * 120.00034 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99931 * 359.97438 * 14 13 12 17 17 O 1.42905 * 109.46963 * 179.97438 * 16 14 13 18 18 C 1.35927 * 117.00079 * 179.97438 * 17 16 14 19 19 C 1.38713 * 120.05596 * 0.02562 * 18 17 16 20 20 C 1.38148 * 119.95605 * 180.02562 * 19 18 17 21 21 C 1.38285 * 120.07584 * 359.97438 * 20 19 18 22 22 C 1.38250 * 120.12020 * 0.02562 * 21 20 19 23 23 C 1.38264 * 120.03998 * 359.68246 * 22 21 20 24 24 Cl 1.73598 * 120.03902 * 180.32067 * 23 22 21 25 25 C 1.47019 * 108.70209 * 335.87354 * 13 12 11 26 26 H 0.97001 * 119.99663 * 0.02562 * 1 2 3 27 27 H 0.96694 * 114.00195 * 61.68649 * 10 9 7 28 28 H 1.09002 * 111.00945 * 88.06154 * 11 9 7 29 29 H 1.08999 * 111.00353 * 324.20692 * 11 9 7 30 30 H 1.08998 * 110.36709 * 278.17139 * 12 11 9 31 31 H 1.09005 * 110.36466 * 155.84673 * 12 11 9 32 32 H 1.09002 * 109.46910 * 299.99521 * 16 14 13 33 33 H 1.08995 * 109.47630 * 59.99841 * 16 14 13 34 34 H 1.07996 * 120.02363 * 0.02562 * 19 18 17 35 35 H 1.07994 * 119.96284 * 179.97438 * 20 19 18 36 36 H 1.07994 * 119.94188 * 179.97438 * 21 20 19 37 37 H 1.07992 * 119.97873 * 179.97438 * 22 21 20 38 38 H 1.09001 * 109.88389 * 120.48020 * 25 13 12 39 39 H 1.09003 * 109.87977 * 241.64361 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2284 -3.6973 -0.1283 12 6 1.3204 -4.7716 -0.7773 13 7 0.4640 -4.0245 -1.7164 14 6 -0.1419 -4.5379 -2.8053 15 8 -0.8270 -3.8271 -3.5097 16 6 0.0319 -5.9953 -3.1475 17 8 -0.7029 -6.2965 -4.3356 18 6 -0.6515 -7.5784 -4.7847 19 6 0.0903 -8.5266 -4.0958 20 6 0.1416 -9.8288 -4.5543 21 6 -0.5462 -10.1880 -5.6990 22 6 -1.2865 -9.2454 -6.3881 23 6 -1.3460 -7.9422 -5.9301 24 17 -2.2824 -6.7606 -6.7908 25 6 0.3802 -2.6268 -1.2682 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2277 -1.9344 1.2627 28 1 2.5787 -4.0221 0.8515 29 1 3.0671 -3.4497 -0.7789 30 1 0.7121 -5.2631 -0.0181 31 1 1.9234 -5.5039 -1.3142 32 1 1.0887 -6.2068 -3.3100 33 1 -0.3392 -6.6082 -2.3261 34 1 0.6275 -8.2472 -3.2015 35 1 0.7194 -10.5670 -4.0183 36 1 -0.5043 -11.2064 -6.0558 37 1 -1.8223 -9.5283 -7.2820 38 1 0.7591 -1.9645 -2.0466 39 1 -0.6540 -2.3739 -1.0345 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592843407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:09 Heat of formation + Delta-G solvation = -95.022990 kcal Electronic energy + Delta-G solvation = -24867.761675 eV Core-core repulsion = 20994.852322 eV Total energy + Delta-G solvation = -3872.909354 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.54345 -39.37926 -37.83104 -36.92966 -36.42942 -34.38711 -32.27855 -31.18684 -30.72298 -30.14574 -28.63240 -27.47933 -24.98738 -23.19901 -22.72546 -22.28615 -19.75723 -18.95866 -18.68306 -17.24436 -16.76163 -16.60011 -16.45772 -15.96691 -15.44209 -14.85229 -14.78066 -14.67267 -14.26570 -14.12156 -13.59848 -13.19709 -12.99765 -12.96125 -12.85694 -12.19683 -12.10285 -11.76563 -11.65775 -11.55280 -11.42817 -11.22999 -11.11030 -10.89774 -10.88078 -10.75234 -10.50280 -10.23965 -9.45141 -9.38893 -9.18342 -8.73016 -8.43131 -8.38261 -8.02127 -6.33074 -4.41935 0.84927 1.03590 2.07594 2.58486 2.94024 3.18050 3.27224 3.30079 3.33672 3.72716 4.23733 4.44905 4.48425 4.71438 4.78093 4.93299 4.95631 4.96323 4.98747 5.15663 5.25954 5.40712 5.58155 5.70200 5.78512 5.88377 5.89639 6.02804 6.09256 6.32122 6.40211 6.64789 6.77267 6.83515 7.04567 7.18967 7.31061 7.68375 7.94104 8.05287 8.55322 8.62985 9.23142 9.32720 10.74792 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.002735 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.878200 B =10235.075747 C =11022.138319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.070 3.930 3 Si 0.904 3.096 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.538 4.538 8 H 0.068 0.932 9 C 0.248 3.752 10 O -0.585 6.585 11 C -0.117 4.117 12 C 0.096 3.904 13 N -0.609 5.609 14 C 0.521 3.479 15 O -0.524 6.524 16 C 0.044 3.956 17 O -0.275 6.275 18 C 0.143 3.857 19 C -0.202 4.202 20 C -0.074 4.074 21 C -0.151 4.151 22 C -0.073 4.073 23 C -0.070 4.070 24 Cl -0.052 7.052 25 C 0.106 3.894 26 H 0.270 0.730 27 H 0.383 0.617 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.091 0.909 33 H 0.091 0.909 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.132 0.868 37 H 0.138 0.862 38 H 0.069 0.931 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.737 -19.798 -7.704 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.133 4.133 3 Si 0.731 3.269 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.576 4.576 8 H 0.086 0.914 9 C 0.207 3.793 10 O -0.394 6.394 11 C -0.155 4.155 12 C -0.027 4.027 13 N -0.344 5.344 14 C 0.306 3.694 15 O -0.400 6.400 16 C -0.034 4.034 17 O -0.187 6.187 18 C 0.096 3.904 19 C -0.221 4.221 20 C -0.093 4.093 21 C -0.170 4.170 22 C -0.092 4.092 23 C -0.098 4.098 24 Cl -0.023 7.023 25 C -0.015 4.015 26 H 0.080 0.920 27 H 0.234 0.766 28 H 0.097 0.903 29 H 0.097 0.903 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.109 0.891 34 H 0.156 0.844 35 H 0.149 0.851 36 H 0.150 0.850 37 H 0.156 0.844 38 H 0.087 0.913 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.360 -19.534 -8.204 21.190 hybrid contribution 0.113 1.365 -0.004 1.369 sum 0.473 -18.169 -8.209 19.943 Atomic orbital electron populations 1.69699 1.06005 1.27932 1.49538 1.25086 0.95067 0.99855 0.93320 0.86342 0.80037 0.82697 0.77801 1.19577 1.20746 1.20711 1.21519 0.93706 0.89996 1.52420 0.91427 1.19506 0.86491 0.92154 0.81108 1.86098 1.51848 1.56655 1.44758 1.22747 0.97409 0.94966 1.00343 1.22420 0.92857 0.95327 0.92080 1.48720 1.48072 1.13324 1.24291 1.19412 0.80946 0.87983 0.81010 1.90746 1.38856 1.60825 1.49556 1.22607 0.97241 0.96407 0.87177 1.86276 1.67369 1.23529 1.41506 1.18818 0.94560 0.84439 0.92617 1.21299 1.04099 0.93995 1.02691 1.21049 0.97288 0.95337 0.95583 1.21018 0.99657 0.99672 0.96640 1.20935 0.98345 0.90091 0.99841 1.20251 1.02095 0.91879 0.95533 1.98393 1.71038 1.57293 1.75543 1.23082 1.01956 0.77623 0.98833 0.91974 0.76650 0.90334 0.90316 0.91352 0.92030 0.89094 0.89085 0.84436 0.85079 0.85019 0.84371 0.91263 0.91406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.46 10.97 55.43 0.61 -22.85 16 2 C 0.07 1.80 5.28 -17.82 -0.09 1.71 16 3 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 7 C -0.54 -13.67 8.12 -34.44 -0.28 -13.95 16 8 H 0.07 1.69 7.78 -52.49 -0.41 1.28 16 9 C 0.25 5.74 0.85 -89.94 -0.08 5.66 16 10 O -0.58 -14.11 13.08 -35.23 -0.46 -14.57 16 11 C -0.12 -2.15 6.23 -24.58 -0.15 -2.31 16 12 C 0.10 1.51 6.68 -2.53 -0.02 1.50 16 13 N -0.61 -11.85 3.33 -170.52 -0.57 -12.42 16 14 C 0.52 10.07 7.93 -10.98 -0.09 9.99 16 15 O -0.52 -12.56 16.83 -14.35 -0.24 -12.80 16 16 C 0.04 0.62 4.23 36.01 0.15 0.77 16 17 O -0.28 -4.36 9.13 -39.42 -0.36 -4.72 16 18 C 0.14 1.85 6.68 -39.19 -0.26 1.59 16 19 C -0.20 -1.99 9.04 -39.44 -0.36 -2.34 16 20 C -0.07 -0.59 10.04 -39.60 -0.40 -0.99 16 21 C -0.15 -1.17 10.04 -39.56 -0.40 -1.56 16 22 C -0.07 -0.68 9.83 -39.57 -0.39 -1.07 16 23 C -0.07 -0.87 6.33 -39.36 -0.25 -1.12 16 24 Cl -0.05 -0.70 28.50 -51.86 -1.48 -2.18 16 25 C 0.11 2.49 5.24 -3.07 -0.02 2.47 16 26 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 27 H 0.38 9.54 7.45 45.56 0.34 9.88 16 28 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.08 1.40 8.04 -51.93 -0.42 0.98 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 0.73 7.48 -51.93 -0.39 0.34 16 32 H 0.09 1.01 7.37 -51.93 -0.38 0.62 16 33 H 0.09 1.03 7.66 -51.93 -0.40 0.63 16 34 H 0.14 1.09 6.30 -52.49 -0.33 0.75 16 35 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 36 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 37 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.07 1.79 7.81 -51.93 -0.41 1.39 16 39 H 0.07 1.75 7.92 -51.93 -0.41 1.34 16 LS Contribution 345.78 15.07 5.21 5.21 Total: -1.00 -30.90 345.78 -8.98 -39.89 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -4.05 Total: 8.91 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -2.62 Total: 0.35 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.04 Total: -35.27 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -1.06 Total: -32.09 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 17 Polarization: -0.70 SS G_CDS: -1.48 Total: -2.18 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -30.90 -8.98 -39.89 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.137 kcal (2) G-P(sol) polarization free energy of solvation -30.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds