Wall clock time and date at job start Tue Mar 31 2020 14:44:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86800 * 120.00103 * 2 1 4 4 H 1.48499 * 109.47160 * 180.02562 * 3 2 1 5 5 H 1.48508 * 109.47271 * 300.00246 * 3 2 1 6 6 H 1.48499 * 109.47118 * 60.00004 * 3 2 1 7 7 C 1.37877 * 120.00025 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00064 * 179.97438 * 7 2 1 9 9 C 1.50703 * 119.99790 * 359.97438 * 7 2 1 10 10 O 1.42901 * 110.64142 * 298.31333 * 9 7 2 11 11 C 1.55154 * 110.71804 * 174.97658 * 9 7 2 12 12 C 1.54910 * 101.58031 * 206.13347 * 11 9 7 13 13 N 1.47426 * 104.83209 * 37.01037 * 12 11 9 14 14 C 1.34775 * 125.64777 * 155.89013 * 13 12 11 15 15 O 1.21276 * 120.00034 * 179.97438 * 14 13 12 16 16 C 1.50705 * 119.99931 * 359.97438 * 14 13 12 17 17 O 1.42905 * 109.46963 * 179.97438 * 16 14 13 18 18 C 1.35927 * 117.00079 * 179.97438 * 17 16 14 19 19 C 1.38713 * 120.05596 * 0.02562 * 18 17 16 20 20 C 1.38148 * 119.95605 * 180.02562 * 19 18 17 21 21 C 1.38285 * 120.07584 * 359.97438 * 20 19 18 22 22 C 1.38250 * 120.12020 * 0.02562 * 21 20 19 23 23 C 1.38264 * 120.03998 * 359.68246 * 22 21 20 24 24 Cl 1.73598 * 120.03902 * 180.32067 * 23 22 21 25 25 C 1.47019 * 108.70209 * 335.87354 * 13 12 11 26 26 H 0.97001 * 119.99663 * 0.02562 * 1 2 3 27 27 H 0.96694 * 114.00195 * 61.68649 * 10 9 7 28 28 H 1.09002 * 111.00945 * 88.06154 * 11 9 7 29 29 H 1.08999 * 111.00353 * 324.20692 * 11 9 7 30 30 H 1.08998 * 110.36709 * 278.17139 * 12 11 9 31 31 H 1.09005 * 110.36466 * 155.84673 * 12 11 9 32 32 H 1.09002 * 109.46910 * 299.99521 * 16 14 13 33 33 H 1.08995 * 109.47630 * 59.99841 * 16 14 13 34 34 H 1.07996 * 120.02363 * 0.02562 * 19 18 17 35 35 H 1.07994 * 119.96284 * 179.97438 * 20 19 18 36 36 H 1.07994 * 119.94188 * 179.97438 * 21 20 19 37 37 H 1.07992 * 119.97873 * 179.97438 * 22 21 20 38 38 H 1.09001 * 109.88389 * 120.48020 * 25 13 12 39 39 H 1.09003 * 109.87977 * 241.64361 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 8 0.4503 -2.6185 1.1770 11 6 2.2284 -3.6973 -0.1283 12 6 1.3204 -4.7716 -0.7773 13 7 0.4640 -4.0245 -1.7164 14 6 -0.1419 -4.5379 -2.8053 15 8 -0.8270 -3.8271 -3.5097 16 6 0.0319 -5.9953 -3.1475 17 8 -0.7029 -6.2965 -4.3356 18 6 -0.6515 -7.5784 -4.7847 19 6 0.0903 -8.5266 -4.0958 20 6 0.1416 -9.8288 -4.5543 21 6 -0.5462 -10.1880 -5.6990 22 6 -1.2865 -9.2454 -6.3881 23 6 -1.3460 -7.9422 -5.9301 24 17 -2.2824 -6.7606 -6.7908 25 6 0.3802 -2.6268 -1.2682 26 1 -0.4850 0.8401 -0.0004 27 1 -0.2277 -1.9344 1.2627 28 1 2.5787 -4.0221 0.8515 29 1 3.0671 -3.4497 -0.7789 30 1 0.7121 -5.2631 -0.0181 31 1 1.9234 -5.5039 -1.3142 32 1 1.0887 -6.2068 -3.3100 33 1 -0.3392 -6.6082 -2.3261 34 1 0.6275 -8.2472 -3.2015 35 1 0.7194 -10.5670 -4.0183 36 1 -0.5043 -11.2064 -6.0558 37 1 -1.8223 -9.5283 -7.2820 38 1 0.7591 -1.9645 -2.0466 39 1 -0.6540 -2.3739 -1.0345 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592843407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:08 Heat of formation + Delta-G solvation = -115.782321 kcal Electronic energy + Delta-G solvation = -24868.661868 eV Core-core repulsion = 20994.852322 eV Total energy + Delta-G solvation = -3873.809546 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.57462 -40.73252 -39.12376 -38.22748 -37.32405 -36.12868 -34.24580 -32.21377 -31.77391 -31.20964 -29.97600 -28.97571 -26.73636 -24.42926 -23.62035 -23.21093 -21.48355 -20.38118 -19.59098 -19.09842 -18.08425 -17.63698 -17.49979 -17.13908 -16.95058 -16.36287 -16.14061 -15.83841 -15.49526 -14.90894 -14.85267 -14.78539 -14.71753 -14.17981 -14.03396 -13.60436 -13.52111 -13.25267 -12.89906 -12.83626 -12.56499 -12.53704 -12.34491 -12.26150 -12.20470 -12.17004 -12.03565 -11.78126 -11.18807 -11.01719 -10.66918 -10.29040 -9.89151 -9.65276 -9.23701 -8.28552 -6.44061 0.15653 0.32110 1.19963 1.37759 1.41889 1.46665 1.47973 1.52377 2.35166 2.50838 2.65885 2.98660 3.34548 3.76589 3.79283 3.87297 3.99964 4.02256 4.09716 4.22031 4.25347 4.36360 4.39962 4.46097 4.63393 4.68749 4.79969 5.01688 5.11513 5.12435 5.21178 5.28721 5.36506 5.45874 5.49498 5.69909 5.73289 6.04068 6.18945 6.54532 6.65166 7.06146 7.25486 7.33190 8.77459 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.023291 B = 0.002735 C = 0.002540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.878200 B =10235.075747 C =11022.138319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.023 3.977 3 Si 0.962 3.038 4 H -0.262 1.262 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.555 4.555 8 H 0.069 0.931 9 C 0.232 3.768 10 O -0.586 6.586 11 C -0.112 4.112 12 C 0.099 3.901 13 N -0.611 5.611 14 C 0.512 3.488 15 O -0.586 6.586 16 C 0.057 3.943 17 O -0.314 6.314 18 C 0.112 3.888 19 C -0.201 4.201 20 C -0.068 4.068 21 C -0.142 4.142 22 C -0.078 4.078 23 C -0.096 4.096 24 Cl -0.082 7.082 25 C 0.122 3.878 26 H 0.269 0.731 27 H 0.375 0.625 28 H 0.094 0.906 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.129 0.871 33 H 0.125 0.875 34 H 0.162 0.838 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.154 0.846 38 H 0.031 0.969 39 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.036 -23.618 -7.194 24.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.178 4.178 3 Si 0.787 3.213 4 H -0.186 1.186 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.593 4.593 8 H 0.087 0.913 9 C 0.191 3.809 10 O -0.393 6.393 11 C -0.150 4.150 12 C -0.022 4.022 13 N -0.345 5.345 14 C 0.301 3.699 15 O -0.466 6.466 16 C -0.021 4.021 17 O -0.227 6.227 18 C 0.065 3.935 19 C -0.219 4.219 20 C -0.086 4.086 21 C -0.160 4.160 22 C -0.096 4.096 23 C -0.123 4.123 24 Cl -0.053 7.053 25 C -0.001 4.001 26 H 0.078 0.922 27 H 0.224 0.776 28 H 0.112 0.888 29 H 0.104 0.896 30 H 0.101 0.899 31 H 0.136 0.864 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.179 0.821 35 H 0.185 0.815 36 H 0.183 0.817 37 H 0.171 0.829 38 H 0.050 0.950 39 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 2.696 -23.409 -7.674 24.782 hybrid contribution -0.597 2.441 -0.188 2.520 sum 2.098 -20.969 -7.861 22.492 Atomic orbital electron populations 1.69814 1.07139 1.28333 1.50327 1.25832 0.95782 1.02899 0.93240 0.85445 0.79287 0.79126 0.77419 1.18637 1.21298 1.20340 1.21893 0.94005 0.91360 1.52029 0.91294 1.19740 0.87083 0.93799 0.80259 1.86086 1.51712 1.56215 1.45323 1.22756 0.96907 0.93531 1.01788 1.22679 0.92461 0.94938 0.92126 1.48751 1.48681 1.11982 1.25078 1.20525 0.79349 0.90287 0.79769 1.90711 1.41428 1.62985 1.51477 1.22579 0.99453 0.91887 0.88137 1.86208 1.68486 1.25692 1.42317 1.19122 0.96645 0.84003 0.93686 1.21625 1.03237 0.94074 1.02994 1.21531 0.96559 0.95186 0.95329 1.21485 0.97826 1.00675 0.95983 1.21231 0.98674 0.89150 1.00579 1.20619 1.03054 0.92497 0.96167 1.98374 1.71952 1.58761 1.76206 1.22540 0.99436 0.79971 0.98145 0.92203 0.77629 0.88752 0.89628 0.89949 0.86419 0.85329 0.85696 0.82093 0.81470 0.81680 0.82876 0.95041 0.95233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.19 10.97 21.45 0.24 -49.96 16 2 C 0.02 1.22 5.28 84.65 0.45 1.66 16 3 Si 0.96 42.11 29.54 68.60 2.03 44.13 16 4 H -0.26 -11.01 7.11 99.48 0.71 -10.30 16 5 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 6 H -0.28 -11.92 7.11 99.48 0.71 -11.22 16 7 C -0.55 -28.55 8.12 25.60 0.21 -28.34 16 8 H 0.07 3.44 7.78 -2.91 -0.02 3.42 16 9 C 0.23 10.81 0.85 -10.35 -0.01 10.80 16 10 O -0.59 -28.62 13.08 -148.98 -1.95 -30.57 16 11 C -0.11 -3.87 6.23 31.99 0.20 -3.68 16 12 C 0.10 2.77 6.68 86.86 0.58 3.35 16 13 N -0.61 -23.47 3.33 -811.79 -2.70 -26.17 16 14 C 0.51 19.78 7.93 87.66 0.69 20.48 16 15 O -0.59 -29.58 16.83 16.02 0.27 -29.31 16 16 C 0.06 1.44 4.23 71.24 0.30 1.74 16 17 O -0.31 -9.76 9.13 -73.69 -0.67 -10.43 16 18 C 0.11 2.71 6.68 22.52 0.15 2.86 16 19 C -0.20 -3.12 9.04 22.36 0.20 -2.92 16 20 C -0.07 -0.73 10.04 22.26 0.22 -0.51 16 21 C -0.14 -1.57 10.04 22.28 0.22 -1.34 16 22 C -0.08 -1.28 9.83 22.28 0.22 -1.06 16 23 C -0.10 -2.31 6.33 22.41 0.14 -2.17 16 24 Cl -0.08 -2.31 28.50 -2.72 -0.08 -2.39 16 25 C 0.12 5.98 5.24 86.73 0.45 6.44 16 26 H 0.27 14.15 8.31 -92.71 -0.77 13.38 16 27 H 0.37 19.43 7.45 -74.06 -0.55 18.88 16 28 H 0.09 2.97 8.14 -2.39 -0.02 2.95 16 29 H 0.09 2.82 8.04 -2.39 -0.02 2.80 16 30 H 0.08 2.13 8.14 -2.39 -0.02 2.12 16 31 H 0.12 2.05 7.48 -2.38 -0.02 2.03 16 32 H 0.13 2.24 7.37 -2.39 -0.02 2.22 16 33 H 0.13 2.28 7.66 -2.39 -0.02 2.27 16 34 H 0.16 1.62 6.30 -2.91 -0.02 1.60 16 35 H 0.17 0.61 8.06 -2.91 -0.02 0.59 16 36 H 0.17 0.73 8.06 -2.91 -0.02 0.71 16 37 H 0.15 1.91 8.06 -2.91 -0.02 1.88 16 38 H 0.03 1.73 7.81 -2.39 -0.02 1.71 16 39 H 0.03 1.63 7.92 -2.39 -0.02 1.61 16 Total: -1.00 -74.44 345.78 1.71 -72.73 By element: Atomic # 1 Polarization: 24.12 SS G_CDS: 0.54 Total: 24.66 kcal Atomic # 6 Polarization: 3.27 SS G_CDS: 4.04 Total: 7.31 kcal Atomic # 7 Polarization: -73.66 SS G_CDS: -2.46 Total: -76.13 kcal Atomic # 8 Polarization: -67.96 SS G_CDS: -2.35 Total: -70.31 kcal Atomic # 14 Polarization: 42.11 SS G_CDS: 2.03 Total: 44.13 kcal Atomic # 17 Polarization: -2.31 SS G_CDS: -0.08 Total: -2.39 kcal Total: -74.44 1.71 -72.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592843407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.053 kcal (2) G-P(sol) polarization free energy of solvation -74.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds