Wall clock time and date at job start Tue Mar 31 2020 14:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00009 * 2 1 4 4 H 1.48493 * 109.46722 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46938 * 300.00009 * 3 2 1 6 6 H 1.48500 * 109.46913 * 60.00144 * 3 2 1 7 7 C 1.37879 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.35355 * 126.74857 * 125.24489 * 10 9 7 12 12 N 1.35315 * 106.16806 * 180.12585 * 11 10 9 13 13 C 1.46506 * 125.86099 * 179.90612 * 12 11 10 14 14 C 1.53002 * 109.47035 * 124.71877 * 13 12 11 15 15 S 1.81399 * 109.47162 * 179.97438 * 14 13 12 16 16 C 1.76197 * 103.00045 * 179.97438 * 15 14 13 17 17 C 1.38865 * 120.05964 * 359.72412 * 16 15 14 18 18 C 1.38149 * 119.96843 * 179.74861 * 17 16 15 19 19 C 1.38473 * 120.08811 * 0.54892 * 18 17 16 20 20 F 1.35098 * 119.93740 * 179.72219 * 19 18 17 21 21 C 1.38475 * 120.12267 * 359.70604 * 19 18 17 22 22 C 1.38277 * 120.03113 * 0.02562 * 21 19 18 23 23 F 1.35094 * 120.04555 * 179.97438 * 22 21 19 24 24 N 1.28708 * 108.26878 * 359.64362 * 12 11 10 25 25 N 1.28631 * 110.17924 * 0.22905 * 24 12 11 26 26 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47101 * 60.00724 * 9 7 2 28 28 H 1.08991 * 109.47172 * 300.00250 * 9 7 2 29 29 H 1.07997 * 126.91335 * 0.02562 * 11 10 9 30 30 H 1.09004 * 109.47073 * 244.71559 * 13 12 11 31 31 H 1.09000 * 109.47212 * 4.71642 * 13 12 11 32 32 H 1.09004 * 109.46930 * 299.99770 * 14 13 12 33 33 H 1.09004 * 109.47059 * 59.99372 * 14 13 12 34 34 H 1.07999 * 120.01549 * 359.97438 * 17 16 15 35 35 H 1.07996 * 119.95728 * 180.24852 * 18 17 16 36 36 H 1.08003 * 119.98345 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.2809 -4.6669 0.8852 12 7 3.3145 -5.4498 0.4984 13 6 3.7545 -6.6799 1.1616 14 6 3.7693 -7.8275 0.1498 15 16 4.3149 -9.3503 0.9707 16 6 4.2685 -10.5395 -0.3287 17 6 3.8664 -10.1620 -1.6031 18 6 3.8357 -11.0948 -2.6217 19 6 4.1944 -12.4085 -2.3710 20 9 4.1579 -13.3194 -3.3680 21 6 4.5909 -12.7902 -1.1003 22 6 4.6288 -11.8595 -0.0783 23 9 5.0151 -12.2317 1.1616 24 7 3.8411 -4.9313 -0.5553 25 7 3.2176 -3.8537 -0.8787 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8896 29 1 1.6287 -4.8248 1.7314 30 1 4.7576 -6.5370 1.5637 31 1 3.0683 -6.9203 1.9737 32 1 2.7663 -7.9703 -0.2523 33 1 4.4555 -7.5870 -0.6624 34 1 3.5813 -9.1388 -1.7987 35 1 3.5268 -10.8000 -3.6136 36 1 4.8707 -13.8154 -0.9073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603245316.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:36 Heat of formation + Delta-G solvation = 33.122244 kcal Electronic energy + Delta-G solvation = -22814.296161 eV Core-core repulsion = 18870.192544 eV Total energy + Delta-G solvation = -3944.103617 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.076 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.51564 -49.48879 -42.65208 -39.23431 -35.56494 -33.35817 -31.90109 -31.15820 -30.98157 -30.70463 -27.47658 -25.14352 -23.81703 -23.50402 -23.26971 -21.30591 -20.17969 -18.84759 -18.09840 -17.69380 -17.29004 -16.56097 -16.39724 -16.29032 -15.96630 -15.80844 -15.31710 -15.14457 -14.77289 -14.62090 -14.51146 -14.13346 -13.54034 -13.20227 -12.99887 -12.80536 -12.59576 -12.31859 -12.04483 -12.00332 -11.73414 -11.08959 -10.91214 -10.76521 -10.69666 -10.25088 -10.16056 -9.77679 -9.64594 -9.56621 -9.36044 -8.49471 -8.21833 -7.95910 -6.02834 -4.03569 0.22418 0.37874 0.65545 1.65564 2.07867 2.67569 2.75303 3.27099 3.33007 3.35086 3.41275 3.48723 3.76772 3.94215 4.01206 4.20712 4.25142 4.48233 4.48465 4.70561 4.88039 4.92635 5.07242 5.12761 5.23573 5.25875 5.32515 5.34328 5.42998 5.74349 5.96493 6.08341 6.16767 7.00169 7.04142 7.47206 7.56159 7.95131 8.32253 9.00074 9.17451 9.59639 11.08261 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.002006 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.842902 B =13957.943231 C =14537.759314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.285 1.285 7 C -0.504 4.504 8 H 0.059 0.941 9 C 0.091 3.909 10 C 0.037 3.963 11 C -0.078 4.078 12 N -0.307 5.307 13 C 0.142 3.858 14 C -0.135 4.135 15 S -0.059 6.059 16 C -0.135 4.135 17 C -0.075 4.075 18 C -0.139 4.139 19 C 0.125 3.875 20 F -0.129 7.129 21 C -0.173 4.173 22 C 0.147 3.853 23 F -0.119 7.119 24 N -0.110 5.110 25 N -0.256 5.256 26 H 0.261 0.739 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.184 0.816 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.101 0.899 33 H 0.111 0.889 34 H 0.147 0.853 35 H 0.149 0.851 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.213 -27.574 1.047 28.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.211 1.211 7 C -0.542 4.542 8 H 0.078 0.922 9 C 0.052 3.948 10 C -0.100 4.100 11 C -0.227 4.227 12 N -0.103 5.103 13 C 0.019 3.981 14 C -0.284 4.284 15 S 0.185 5.815 16 C -0.249 4.249 17 C -0.099 4.099 18 C -0.160 4.160 19 C 0.103 3.897 20 F -0.107 7.107 21 C -0.194 4.194 22 C 0.121 3.879 23 F -0.098 7.098 24 N -0.088 5.088 25 N -0.123 5.123 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.201 0.799 30 H 0.123 0.877 31 H 0.130 0.870 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.165 0.835 35 H 0.167 0.833 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 8.490 -27.658 1.231 28.958 hybrid contribution -0.668 0.717 -0.386 1.053 sum 7.822 -26.942 0.846 28.067 Atomic orbital electron populations 1.69952 1.05972 1.26720 1.51088 1.24980 0.94889 0.99279 0.95300 0.86454 0.80200 0.83404 0.77517 1.19700 1.20920 1.21071 1.21067 0.93277 0.89709 1.50176 0.92224 1.17756 0.90869 0.87543 0.98604 1.23069 0.97640 0.97601 0.91648 1.23428 0.97004 0.96147 1.06095 1.47058 1.22870 1.19169 1.21210 1.21381 1.03777 0.79338 0.93642 1.24065 1.06821 0.94689 1.02854 1.85614 1.83547 1.00295 1.12014 1.21860 1.07703 0.96227 0.99136 1.21010 0.98080 1.00662 0.90148 1.21175 1.02293 0.91251 1.01272 1.17279 1.00862 0.86886 0.84716 1.91553 1.93918 1.65928 1.59323 1.20955 1.05757 1.01328 0.91337 1.16605 0.99936 0.90759 0.80568 1.91567 1.88101 1.91620 1.38480 1.78179 1.21725 1.07368 1.01557 1.75093 1.06803 1.06871 1.23563 0.92930 0.94220 0.94453 0.79885 0.87744 0.86967 0.88035 0.87036 0.83527 0.83319 0.82780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.25 13.29 55.43 0.74 -25.51 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.50 -14.26 9.09 -34.44 -0.31 -14.58 16 8 H 0.06 1.73 7.74 -52.49 -0.41 1.33 16 9 C 0.09 2.31 5.55 -29.03 -0.16 2.15 16 10 C 0.04 0.82 6.44 -82.77 -0.53 0.28 16 11 C -0.08 -1.32 11.49 -17.04 -0.20 -1.52 16 12 N -0.31 -4.60 3.44 -61.25 -0.21 -4.81 16 13 C 0.14 1.33 6.46 -4.04 -0.03 1.31 16 14 C -0.14 -1.12 4.46 37.16 0.17 -0.95 16 15 S -0.06 -0.48 21.52 -107.50 -2.31 -2.80 16 16 C -0.14 -1.14 6.11 -39.03 -0.24 -1.37 16 17 C -0.08 -0.56 9.36 -39.38 -0.37 -0.92 16 18 C -0.14 -0.96 10.02 -39.53 -0.40 -1.35 16 19 C 0.12 0.93 7.30 -39.41 -0.29 0.64 16 20 F -0.13 -1.03 17.26 2.25 0.04 -0.99 16 21 C -0.17 -1.24 10.00 -39.48 -0.39 -1.63 16 22 C 0.15 1.24 7.28 -39.25 -0.29 0.96 16 23 F -0.12 -1.11 16.75 2.25 0.04 -1.07 16 24 N -0.11 -2.06 12.91 60.35 0.78 -1.28 16 25 N -0.26 -5.81 12.40 33.29 0.41 -5.40 16 26 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 27 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 28 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 29 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.11 0.77 8.07 -51.93 -0.42 0.35 16 32 H 0.10 0.82 7.73 -51.92 -0.40 0.41 16 33 H 0.11 0.99 7.74 -51.92 -0.40 0.59 16 34 H 0.15 0.96 5.87 -52.49 -0.31 0.65 16 35 H 0.15 0.76 8.06 -52.49 -0.42 0.34 16 36 H 0.15 0.81 8.06 -52.48 -0.42 0.39 16 LS Contribution 341.49 15.07 5.15 5.15 Total: -1.00 -32.78 341.49 -7.13 -39.91 By element: Atomic # 1 Polarization: -0.91 SS G_CDS: -3.61 Total: -4.51 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -3.13 Total: -15.49 kcal Atomic # 7 Polarization: -38.72 SS G_CDS: 1.72 Total: -37.00 kcal Atomic # 9 Polarization: -2.14 SS G_CDS: 0.08 Total: -2.06 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: -0.48 SS G_CDS: -2.31 Total: -2.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.78 -7.13 -39.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603245316.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.037 kcal (2) G-P(sol) polarization free energy of solvation -32.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds