Wall clock time and date at job start Tue Mar 31 2020 14:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86808 * 120.00009 * 2 1 4 4 H 1.48493 * 109.46722 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.46938 * 300.00009 * 3 2 1 6 6 H 1.48500 * 109.46913 * 60.00144 * 3 2 1 7 7 C 1.37879 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99978 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99625 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.46874 * 180.02562 * 9 7 2 11 11 C 1.35355 * 126.74857 * 125.24489 * 10 9 7 12 12 N 1.35315 * 106.16806 * 180.12585 * 11 10 9 13 13 C 1.46506 * 125.86099 * 179.90612 * 12 11 10 14 14 C 1.53002 * 109.47035 * 124.71877 * 13 12 11 15 15 S 1.81399 * 109.47162 * 179.97438 * 14 13 12 16 16 C 1.76197 * 103.00045 * 179.97438 * 15 14 13 17 17 C 1.38865 * 120.05964 * 359.72412 * 16 15 14 18 18 C 1.38149 * 119.96843 * 179.74861 * 17 16 15 19 19 C 1.38473 * 120.08811 * 0.54892 * 18 17 16 20 20 F 1.35098 * 119.93740 * 179.72219 * 19 18 17 21 21 C 1.38475 * 120.12267 * 359.70604 * 19 18 17 22 22 C 1.38277 * 120.03113 * 0.02562 * 21 19 18 23 23 F 1.35094 * 120.04555 * 179.97438 * 22 21 19 24 24 N 1.28708 * 108.26878 * 359.64362 * 12 11 10 25 25 N 1.28631 * 110.17924 * 0.22905 * 24 12 11 26 26 H 0.97002 * 119.99998 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47101 * 60.00724 * 9 7 2 28 28 H 1.08991 * 109.47172 * 300.00250 * 9 7 2 29 29 H 1.07997 * 126.91335 * 0.02562 * 11 10 9 30 30 H 1.09004 * 109.47073 * 244.71559 * 13 12 11 31 31 H 1.09000 * 109.47212 * 4.71642 * 13 12 11 32 32 H 1.09004 * 109.46930 * 299.99770 * 14 13 12 33 33 H 1.09004 * 109.47059 * 59.99372 * 14 13 12 34 34 H 1.07999 * 120.01549 * 359.97438 * 17 16 15 35 35 H 1.07996 * 119.95728 * 180.24852 * 18 17 16 36 36 H 1.08003 * 119.98345 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 6 2.2303 -3.6446 -0.0005 11 6 2.2809 -4.6669 0.8852 12 7 3.3145 -5.4498 0.4984 13 6 3.7545 -6.6799 1.1616 14 6 3.7693 -7.8275 0.1498 15 16 4.3149 -9.3503 0.9707 16 6 4.2685 -10.5395 -0.3287 17 6 3.8664 -10.1620 -1.6031 18 6 3.8357 -11.0948 -2.6217 19 6 4.1944 -12.4085 -2.3710 20 9 4.1579 -13.3194 -3.3680 21 6 4.5909 -12.7902 -1.1003 22 6 4.6288 -11.8595 -0.0783 23 9 5.0151 -12.2317 1.1616 24 7 3.8411 -4.9313 -0.5553 25 7 3.2176 -3.8537 -0.8787 26 1 -0.4850 0.8401 -0.0004 27 1 0.6241 -2.5567 -0.8903 28 1 0.6247 -2.5570 0.8896 29 1 1.6287 -4.8248 1.7314 30 1 4.7576 -6.5370 1.5637 31 1 3.0683 -6.9203 1.9737 32 1 2.7663 -7.9703 -0.2523 33 1 4.4555 -7.5870 -0.6624 34 1 3.5813 -9.1388 -1.7987 35 1 3.5268 -10.8000 -3.6136 36 1 4.8707 -13.8154 -0.9073 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603245316.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:36 Heat of formation + Delta-G solvation = 14.559697 kcal Electronic energy + Delta-G solvation = -22815.101094 eV Core-core repulsion = 18870.192544 eV Total energy + Delta-G solvation = -3944.908550 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 325.076 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -50.16662 -50.08893 -44.07165 -39.80598 -36.72928 -35.30481 -32.93726 -32.55939 -31.71473 -31.55755 -29.31278 -26.07961 -25.41524 -24.39462 -24.00173 -22.64528 -21.60266 -19.47993 -18.74071 -18.61057 -18.28674 -18.16996 -17.31199 -17.15383 -16.86707 -16.56943 -16.44385 -16.05291 -15.96078 -15.59396 -15.40448 -15.10927 -14.60576 -14.30843 -14.12766 -13.98878 -13.56556 -13.54891 -13.32111 -12.99495 -12.77887 -12.66169 -12.57830 -12.46282 -11.89322 -11.66087 -11.51816 -11.36921 -10.91619 -10.84005 -10.57948 -10.21834 -9.86665 -8.57715 -8.18334 -6.26483 -0.37123 -0.18780 -0.02713 0.74079 1.00513 1.40573 1.42114 1.54763 1.68465 1.76875 2.10153 2.45026 2.68240 3.14781 3.17302 3.25441 3.40401 3.51817 3.70304 3.72863 3.93290 4.04450 4.16153 4.34434 4.37177 4.47861 4.52286 4.56348 4.66890 4.79494 4.80164 4.87149 5.30636 5.44438 5.52305 5.55644 5.77639 5.77999 6.23237 6.82363 7.40269 7.69379 8.92628 Molecular weight = 325.08amu Principal moments of inertia in cm(-1) A = 0.028195 B = 0.002006 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 992.842902 B =13957.943231 C =14537.759314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.008 3.992 3 Si 0.961 3.039 4 H -0.274 1.274 5 H -0.278 1.278 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.044 0.956 9 C 0.101 3.899 10 C -0.007 4.007 11 C -0.046 4.046 12 N -0.286 5.286 13 C 0.131 3.869 14 C -0.129 4.129 15 S -0.052 6.052 16 C -0.146 4.146 17 C -0.079 4.079 18 C -0.136 4.136 19 C 0.118 3.882 20 F -0.133 7.133 21 C -0.168 4.168 22 C 0.132 3.868 23 F -0.127 7.127 24 N -0.115 5.115 25 N -0.305 5.305 26 H 0.266 0.734 27 H 0.009 0.991 28 H 0.035 0.965 29 H 0.227 0.773 30 H 0.120 0.880 31 H 0.148 0.852 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.166 0.834 36 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.748 -28.664 2.087 29.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.191 4.191 3 Si 0.786 3.214 4 H -0.199 1.199 5 H -0.203 1.203 6 H -0.197 1.197 7 C -0.560 4.560 8 H 0.062 0.938 9 C 0.062 3.938 10 C -0.145 4.145 11 C -0.196 4.196 12 N -0.082 5.082 13 C 0.010 3.990 14 C -0.278 4.278 15 S 0.192 5.808 16 C -0.260 4.260 17 C -0.102 4.102 18 C -0.156 4.156 19 C 0.095 3.905 20 F -0.111 7.111 21 C -0.189 4.189 22 C 0.107 3.893 23 F -0.106 7.106 24 N -0.094 5.094 25 N -0.172 5.172 26 H 0.075 0.925 27 H 0.027 0.973 28 H 0.053 0.947 29 H 0.244 0.756 30 H 0.138 0.862 31 H 0.166 0.834 32 H 0.124 0.876 33 H 0.122 0.878 34 H 0.172 0.828 35 H 0.184 0.816 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 9.049 -28.785 2.268 30.260 hybrid contribution -0.803 0.874 -0.688 1.372 sum 8.247 -27.911 1.580 29.147 Atomic orbital electron populations 1.70040 1.07202 1.27810 1.51634 1.25782 0.95786 1.02644 0.94849 0.85464 0.78630 0.79290 0.78042 1.19872 1.20322 1.19696 1.21306 0.92763 0.91562 1.50348 0.93754 1.17400 0.91155 0.88320 0.96919 1.22654 0.98519 0.98962 0.94374 1.23803 0.96560 0.94006 1.05196 1.47412 1.21285 1.19793 1.19706 1.21937 1.05601 0.77184 0.94266 1.23936 1.06986 0.94529 1.02379 1.85563 1.83640 0.99847 1.11738 1.21992 1.08066 0.96323 0.99603 1.21120 0.98067 1.01128 0.89908 1.21396 1.01344 0.90920 1.01973 1.17381 1.01236 0.87091 0.84742 1.91545 1.93997 1.66102 1.59474 1.21113 1.04851 1.01979 0.90927 1.16738 1.00867 0.91133 0.80605 1.91545 1.88335 1.91709 1.38964 1.78051 1.21703 1.06668 1.02972 1.75003 1.08004 1.08892 1.25316 0.92529 0.97325 0.94653 0.75647 0.86202 0.83432 0.87572 0.87772 0.82806 0.81645 0.81165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.81 13.29 21.45 0.28 -54.52 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.96 45.08 29.54 68.60 2.03 47.11 16 4 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 5 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.52 -30.23 9.09 25.60 0.23 -30.00 16 8 H 0.04 2.64 7.74 -2.92 -0.02 2.62 16 9 C 0.10 5.27 5.55 29.10 0.16 5.43 16 10 C -0.01 -0.32 6.44 41.60 0.27 -0.05 16 11 C -0.05 -1.44 11.49 83.49 0.96 -0.48 16 12 N -0.29 -7.89 3.44 -347.71 -1.20 -9.09 16 13 C 0.13 2.01 6.46 86.38 0.56 2.56 16 14 C -0.13 -1.82 4.46 71.98 0.32 -1.50 16 15 S -0.05 -0.74 21.52 -56.49 -1.22 -1.95 16 16 C -0.15 -2.23 6.11 22.63 0.14 -2.09 16 17 C -0.08 -1.04 9.36 22.40 0.21 -0.83 16 18 C -0.14 -1.65 10.02 22.30 0.22 -1.43 16 19 C 0.12 1.58 7.30 22.38 0.16 1.75 16 20 F -0.13 -1.96 17.26 44.97 0.78 -1.18 16 21 C -0.17 -2.19 10.00 22.34 0.22 -1.96 16 22 C 0.13 2.07 7.28 22.49 0.16 2.24 16 23 F -0.13 -2.22 16.75 44.97 0.75 -1.47 16 24 N -0.12 -4.24 12.91 37.02 0.48 -3.76 16 25 N -0.31 -14.06 12.40 -48.59 -0.60 -14.66 16 26 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 27 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 28 H 0.04 1.81 8.12 -2.39 -0.02 1.79 16 29 H 0.23 4.96 8.06 -2.91 -0.02 4.94 16 30 H 0.12 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.15 1.31 8.07 -2.39 -0.02 1.29 16 32 H 0.11 1.43 7.73 -2.39 -0.02 1.41 16 33 H 0.10 1.66 7.74 -2.39 -0.02 1.64 16 34 H 0.15 1.77 5.87 -2.91 -0.02 1.75 16 35 H 0.17 1.38 8.06 -2.91 -0.02 1.35 16 36 H 0.17 1.54 8.06 -2.91 -0.02 1.51 16 Total: -1.00 -72.72 341.49 6.51 -66.21 By element: Atomic # 1 Polarization: -2.35 SS G_CDS: 1.13 Total: -1.22 kcal Atomic # 6 Polarization: -29.54 SS G_CDS: 4.08 Total: -25.46 kcal Atomic # 7 Polarization: -81.00 SS G_CDS: -1.04 Total: -82.03 kcal Atomic # 9 Polarization: -4.18 SS G_CDS: 1.53 Total: -2.65 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Atomic # 16 Polarization: -0.74 SS G_CDS: -1.22 Total: -1.95 kcal Total: -72.72 6.51 -66.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603245316.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.767 kcal (2) G-P(sol) polarization free energy of solvation -72.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds