Wall clock time and date at job start Tue Mar 31 2020 13:57:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48494 * 109.47762 * 240.00405 * 3 2 1 5 5 H 1.48504 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47017 * 120.00366 * 3 2 1 7 7 C 1.40032 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 170.16206 * 7 2 1 9 9 C 1.41541 * 119.99690 * 350.15324 * 7 2 1 10 10 C 1.41185 * 120.99237 * 153.72578 * 9 7 2 11 11 C 1.37584 * 119.01965 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11347 * 0.02562 * 11 10 9 13 13 C 1.32485 * 122.22730 * 359.66157 * 12 11 10 14 14 N 1.39381 * 119.58150 * 180.31809 * 13 12 11 15 15 C 1.34773 * 120.00263 * 5.67217 * 14 13 12 16 16 O 1.21605 * 119.99731 * 5.12363 * 15 14 13 17 17 C 1.47472 * 120.00385 * 185.11468 * 15 14 13 18 18 C 1.40115 * 119.93250 * 359.73216 * 17 15 14 19 19 C 1.36291 * 120.38677 * 179.71546 * 18 17 15 20 20 C 1.39865 * 120.04075 * 0.55405 * 19 18 17 21 21 N 1.35808 * 133.51575 * 179.72726 * 20 19 18 22 22 C 1.30783 * 108.79779 * 179.97438 * 21 20 19 23 23 O 1.35094 * 124.92118 * 180.02562 * 22 21 20 24 24 O 1.34317 * 110.15803 * 359.97438 * 22 21 20 25 25 C 1.35315 * 108.13093 * 359.97438 * 24 22 21 26 26 C 1.38091 * 133.76590 * 179.97438 * 25 24 22 27 27 C 1.38620 * 120.83435 * 0.63364 * 13 12 11 28 28 H 0.97000 * 119.99926 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.48825 * 0.03825 * 10 9 7 30 30 H 1.08001 * 119.44354 * 180.02562 * 11 10 9 31 31 H 0.96999 * 119.99744 * 185.67892 * 14 13 12 32 32 H 1.08001 * 119.81106 * 359.97438 * 18 17 15 33 33 H 1.07993 * 119.97794 * 180.27800 * 19 18 17 34 34 H 0.96706 * 114.00121 * 359.95685 * 23 22 21 35 35 H 1.08002 * 120.18031 * 0.02715 * 26 25 24 36 36 H 1.08002 * 120.60406 * 179.68005 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6966 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0757 -1.2195 -0.1603 9 6 1.3155 -2.4295 0.2085 10 6 1.8135 -3.6467 -0.3050 11 6 1.1075 -4.8056 -0.0780 12 7 -0.0212 -4.7939 0.6080 13 6 -0.5277 -3.6800 1.1159 14 7 -1.7196 -3.7323 1.8366 15 6 -2.2894 -4.9223 2.1113 16 8 -1.7180 -5.9534 1.8126 17 6 -3.6057 -4.9742 2.7742 18 6 -4.2602 -3.7854 3.1231 19 6 -5.4795 -3.8225 3.7308 20 6 -6.0803 -5.0518 4.0207 21 7 -7.2531 -5.4041 4.6080 22 6 -7.3354 -6.7091 4.6352 23 8 -8.3711 -7.4080 5.1490 24 8 -6.2417 -7.2536 4.0773 25 6 -5.4284 -6.2489 3.6773 26 6 -4.1958 -6.2076 3.0560 27 6 0.1092 -2.4623 0.9341 28 1 -0.4850 0.8400 0.0004 29 1 2.7352 -3.6678 -0.8675 30 1 1.4824 -5.7406 -0.4674 31 1 -2.1390 -2.9121 2.1405 32 1 -3.7976 -2.8341 2.9053 33 1 -5.9801 -2.9021 3.9927 34 1 -9.0773 -6.8556 5.5113 35 1 -3.6903 -7.1245 2.7911 36 1 -0.3097 -1.5558 1.3454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610792901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:24 Heat of formation + Delta-G solvation = 16.971671 kcal Electronic energy + Delta-G solvation = -25302.949951 eV Core-core repulsion = 21333.789556 eV Total energy + Delta-G solvation = -3969.160395 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.089 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.61532 -40.03050 -38.81897 -38.19605 -37.21464 -34.82668 -34.45621 -33.84084 -31.02723 -30.63899 -30.08620 -28.32792 -26.04718 -24.54822 -23.92838 -22.39168 -22.05108 -21.64212 -20.21575 -19.34490 -18.51978 -18.00911 -17.71982 -17.56472 -16.49548 -15.60167 -15.45177 -15.01329 -14.75554 -14.66860 -14.24570 -14.21976 -14.10246 -14.00736 -13.60006 -13.05236 -12.84752 -12.81092 -12.62009 -12.33878 -11.82002 -11.48295 -11.25677 -11.22778 -10.94680 -10.86950 -10.34773 -10.20778 -9.83584 -9.60657 -9.43321 -9.17067 -8.53656 -8.03989 -7.80944 -7.10316 -6.79378 -4.67110 0.22182 0.91602 1.19623 1.90643 2.56533 2.77309 2.98874 3.01802 3.07642 3.09596 3.24829 3.49042 3.81956 3.84313 4.06512 4.41920 4.65190 4.67396 4.78390 4.91205 5.00958 5.28522 5.62185 5.65966 5.71239 5.86018 5.95823 6.04766 6.16971 6.49012 6.51470 6.58915 6.75481 6.90234 7.08158 7.21643 7.31817 7.40044 7.69973 7.87916 8.13263 8.35799 8.63138 8.70776 8.76426 9.61430 10.05561 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022847 B = 0.002548 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.248860 B =10984.351070 C =12149.854405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.795 5.795 2 C 0.075 3.925 3 Si 0.915 3.085 4 H -0.264 1.264 5 H -0.277 1.277 6 H -0.263 1.263 7 C -0.453 4.453 8 H 0.081 0.919 9 C 0.141 3.859 10 C -0.280 4.280 11 C 0.118 3.882 12 N -0.554 5.554 13 C 0.334 3.666 14 N -0.649 5.649 15 C 0.546 3.454 16 O -0.473 6.473 17 C -0.106 4.106 18 C -0.078 4.078 19 C -0.075 4.075 20 C 0.068 3.932 21 N -0.526 5.526 22 C 0.453 3.547 23 O -0.414 6.414 24 O -0.197 6.197 25 C -0.008 4.008 26 C -0.019 4.019 27 C -0.236 4.236 28 H 0.282 0.718 29 H 0.103 0.897 30 H 0.125 0.875 31 H 0.408 0.592 32 H 0.145 0.855 33 H 0.144 0.856 34 H 0.442 0.558 35 H 0.152 0.848 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.146 -3.856 8.928 17.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.421 5.421 2 C -0.143 4.143 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.202 1.202 6 H -0.188 1.188 7 C -0.485 4.485 8 H 0.100 0.900 9 C 0.133 3.867 10 C -0.304 4.304 11 C -0.036 4.036 12 N -0.273 5.273 13 C 0.110 3.890 14 N -0.295 5.295 15 C 0.331 3.669 16 O -0.345 6.345 17 C -0.110 4.110 18 C -0.098 4.098 19 C -0.094 4.094 20 C -0.044 4.044 21 N -0.277 5.277 22 C 0.204 3.796 23 O -0.216 6.216 24 O -0.091 6.091 25 C -0.056 4.056 26 C -0.039 4.039 27 C -0.261 4.261 28 H 0.093 0.907 29 H 0.121 0.879 30 H 0.142 0.858 31 H 0.245 0.755 32 H 0.162 0.838 33 H 0.162 0.838 34 H 0.302 0.698 35 H 0.170 0.830 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.649 -5.511 8.950 18.030 hybrid contribution 0.408 1.805 -0.040 1.851 sum -14.241 -3.706 8.910 17.203 Atomic orbital electron populations 1.69721 1.07561 1.29355 1.35488 1.25948 0.94902 1.01460 0.91969 0.86246 0.79991 0.79735 0.80063 1.18903 1.20238 1.18771 1.19554 0.95856 0.89975 1.43070 0.90046 1.17588 0.90347 0.92309 0.86471 1.21943 1.04126 0.94385 1.09919 1.21756 0.90496 0.96598 0.94767 1.67167 1.15052 1.28049 1.17011 1.18135 0.86388 0.91063 0.93456 1.43253 1.23460 1.08614 1.54171 1.17933 0.84446 0.84522 0.80029 1.90883 1.62244 1.32479 1.48845 1.19876 0.96212 0.92538 1.02359 1.21024 0.94191 0.98160 0.96440 1.19895 0.94779 0.95237 0.99537 1.19623 0.90718 0.94787 0.99273 1.71141 1.21436 1.07942 1.27133 1.22298 0.84191 0.83145 0.89922 1.84648 1.27654 1.35308 1.73941 1.84384 1.26153 1.35097 1.63428 1.19771 0.95053 0.84848 1.05970 1.19841 0.89465 0.99475 0.95089 1.21672 1.00913 0.95452 1.08110 0.90698 0.87879 0.85769 0.75526 0.83774 0.83838 0.69813 0.82995 0.84820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -18.90 10.70 55.55 0.59 -18.31 16 2 C 0.08 1.77 5.31 -17.34 -0.09 1.67 16 3 Si 0.92 17.50 29.57 -169.99 -5.03 12.48 16 4 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 5 H -0.28 -5.16 7.11 56.52 0.40 -4.76 16 6 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 7 C -0.45 -11.34 9.14 -37.65 -0.34 -11.68 16 8 H 0.08 1.95 7.87 -52.49 -0.41 1.53 16 9 C 0.14 3.62 5.60 -106.55 -0.60 3.02 16 10 C -0.28 -6.71 9.90 -38.70 -0.38 -7.09 16 11 C 0.12 2.77 11.15 -17.68 -0.20 2.58 16 12 N -0.55 -13.81 7.89 -12.54 -0.10 -13.91 16 13 C 0.33 7.85 7.40 -154.77 -1.15 6.71 16 14 N -0.65 -12.22 5.33 -12.46 -0.07 -12.28 16 15 C 0.55 10.09 7.71 -12.50 -0.10 10.00 16 16 O -0.47 -10.60 14.62 5.27 0.08 -10.52 16 17 C -0.11 -1.51 5.88 -104.92 -0.62 -2.12 16 18 C -0.08 -0.88 9.46 -39.58 -0.37 -1.25 16 19 C -0.08 -0.80 10.03 -39.67 -0.40 -1.20 16 20 C 0.07 0.84 7.23 -84.62 -0.61 0.23 16 21 N -0.53 -5.97 11.36 -12.72 -0.14 -6.12 16 22 C 0.45 4.69 9.54 52.32 0.50 5.19 16 23 O -0.41 -2.63 13.62 -40.29 -0.55 -3.18 16 24 O -0.20 -2.48 10.79 -20.51 -0.22 -2.70 16 25 C -0.01 -0.10 7.40 -38.76 -0.29 -0.39 16 26 C -0.02 -0.26 9.60 -39.13 -0.38 -0.64 16 27 C -0.24 -5.79 8.61 -38.47 -0.33 -6.12 16 28 H 0.28 6.08 8.29 -40.82 -0.34 5.74 16 29 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 30 H 0.12 2.54 8.06 -52.49 -0.42 2.12 16 31 H 0.41 6.15 6.71 -40.82 -0.27 5.88 16 32 H 0.14 1.29 6.38 -52.49 -0.33 0.96 16 33 H 0.14 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.44 0.33 9.06 45.56 0.41 0.74 16 35 H 0.15 2.09 7.64 -52.49 -0.40 1.69 16 36 H 0.13 3.23 6.11 -52.49 -0.32 2.90 16 LS Contribution 325.36 15.07 4.90 4.90 Total: -1.00 -32.97 325.36 -7.62 -40.58 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -1.73 Total: 10.14 kcal Atomic # 6 Polarization: 4.26 SS G_CDS: -5.35 Total: -1.09 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.28 Total: -50.62 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.69 Total: -16.40 kcal Atomic # 14 Polarization: 17.50 SS G_CDS: -5.03 Total: 12.48 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.97 -7.62 -40.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610792901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.556 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.585 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds