Wall clock time and date at job start Tue Mar 31 2020 13:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30742 * 1 3 3 Si 1.86797 * 120.00005 * 2 1 4 4 H 1.48494 * 109.47762 * 240.00405 * 3 2 1 5 5 H 1.48504 * 109.47153 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47017 * 120.00366 * 3 2 1 7 7 C 1.40032 * 120.00045 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00146 * 170.16206 * 7 2 1 9 9 C 1.41541 * 119.99690 * 350.15324 * 7 2 1 10 10 C 1.41185 * 120.99237 * 153.72578 * 9 7 2 11 11 C 1.37584 * 119.01965 * 180.02562 * 10 9 7 12 12 N 1.32082 * 121.11347 * 0.02562 * 11 10 9 13 13 C 1.32485 * 122.22730 * 359.66157 * 12 11 10 14 14 N 1.39381 * 119.58150 * 180.31809 * 13 12 11 15 15 C 1.34773 * 120.00263 * 5.67217 * 14 13 12 16 16 O 1.21605 * 119.99731 * 5.12363 * 15 14 13 17 17 C 1.47472 * 120.00385 * 185.11468 * 15 14 13 18 18 C 1.40115 * 119.93250 * 359.73216 * 17 15 14 19 19 C 1.36291 * 120.38677 * 179.71546 * 18 17 15 20 20 C 1.39865 * 120.04075 * 0.55405 * 19 18 17 21 21 N 1.35808 * 133.51575 * 179.72726 * 20 19 18 22 22 C 1.30783 * 108.79779 * 179.97438 * 21 20 19 23 23 O 1.35094 * 124.92118 * 180.02562 * 22 21 20 24 24 O 1.34317 * 110.15803 * 359.97438 * 22 21 20 25 25 C 1.35315 * 108.13093 * 359.97438 * 24 22 21 26 26 C 1.38091 * 133.76590 * 179.97438 * 25 24 22 27 27 C 1.38620 * 120.83435 * 0.63364 * 13 12 11 28 28 H 0.97000 * 119.99926 * 359.97438 * 1 2 3 29 29 H 1.08000 * 120.48825 * 0.03825 * 10 9 7 30 30 H 1.08001 * 119.44354 * 180.02562 * 11 10 9 31 31 H 0.96999 * 119.99744 * 185.67892 * 14 13 12 32 32 H 1.08001 * 119.81106 * 359.97438 * 18 17 15 33 33 H 1.07993 * 119.97794 * 180.27800 * 19 18 17 34 34 H 0.96706 * 114.00121 * 359.95685 * 23 22 21 35 35 H 1.08002 * 120.18031 * 0.02715 * 26 25 24 36 36 H 1.08002 * 120.60406 * 179.68005 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2414 1.6177 0.0000 4 1 3.0951 1.6966 -1.2125 5 1 1.2764 2.7465 0.0006 6 1 3.0953 1.6963 1.2125 7 6 2.0076 -1.2127 -0.0005 8 1 3.0757 -1.2195 -0.1603 9 6 1.3155 -2.4295 0.2085 10 6 1.8135 -3.6467 -0.3050 11 6 1.1075 -4.8056 -0.0780 12 7 -0.0212 -4.7939 0.6080 13 6 -0.5277 -3.6800 1.1159 14 7 -1.7196 -3.7323 1.8366 15 6 -2.2894 -4.9223 2.1113 16 8 -1.7180 -5.9534 1.8126 17 6 -3.6057 -4.9742 2.7742 18 6 -4.2602 -3.7854 3.1231 19 6 -5.4795 -3.8225 3.7308 20 6 -6.0803 -5.0518 4.0207 21 7 -7.2531 -5.4041 4.6080 22 6 -7.3354 -6.7091 4.6352 23 8 -8.3711 -7.4080 5.1490 24 8 -6.2417 -7.2536 4.0773 25 6 -5.4284 -6.2489 3.6773 26 6 -4.1958 -6.2076 3.0560 27 6 0.1092 -2.4623 0.9341 28 1 -0.4850 0.8400 0.0004 29 1 2.7352 -3.6678 -0.8675 30 1 1.4824 -5.7406 -0.4674 31 1 -2.1390 -2.9121 2.1405 32 1 -3.7976 -2.8341 2.9053 33 1 -5.9801 -2.9021 3.9927 34 1 -9.0773 -6.8556 5.5113 35 1 -3.6903 -7.1245 2.7911 36 1 -0.3097 -1.5558 1.3454 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610792901.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:57:23 Heat of formation + Delta-G solvation = -8.502034 kcal Electronic energy + Delta-G solvation = -25304.054573 eV Core-core repulsion = 21333.789556 eV Total energy + Delta-G solvation = -3970.265017 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.089 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -44.51775 -41.49771 -39.97296 -39.30734 -38.40942 -36.17173 -35.75718 -35.53854 -32.45396 -31.99223 -31.38085 -29.83225 -27.89752 -25.64730 -24.88502 -23.84023 -23.43490 -22.99558 -21.70211 -20.12547 -19.75040 -19.45134 -18.95522 -18.44005 -17.91601 -17.08594 -16.97683 -16.24526 -16.06491 -16.03034 -15.82186 -15.59328 -15.11153 -14.95461 -14.83223 -14.56226 -14.35015 -14.23699 -13.91000 -13.62014 -13.16112 -12.84675 -12.74960 -12.66867 -12.20731 -12.08493 -11.89978 -11.78936 -11.52145 -11.20375 -11.15819 -10.10420 -9.92156 -9.63867 -9.49087 -8.87067 -8.56247 -6.55488 -0.78001 -0.01335 0.42620 0.72110 1.02236 1.08365 1.44557 1.55052 1.59814 1.89683 1.97739 2.23159 2.34002 2.59866 2.86958 3.17347 3.47206 3.64278 3.75816 3.84097 3.87852 4.10629 4.21450 4.50339 4.69740 4.79579 4.80957 4.83662 4.93605 5.02169 5.06185 5.10100 5.26800 5.28172 5.48728 5.62055 5.84944 5.94260 6.14565 6.45596 6.47902 6.57057 6.80560 6.86090 7.18989 7.81661 8.31546 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022847 B = 0.002548 C = 0.002304 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.248860 B =10984.351070 C =12149.854405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.815 5.815 2 C 0.038 3.962 3 Si 0.988 3.012 4 H -0.263 1.263 5 H -0.265 1.265 6 H -0.260 1.260 7 C -0.482 4.482 8 H 0.083 0.917 9 C 0.111 3.889 10 C -0.294 4.294 11 C 0.112 3.888 12 N -0.579 5.579 13 C 0.332 3.668 14 N -0.640 5.640 15 C 0.548 3.452 16 O -0.520 6.520 17 C -0.120 4.120 18 C -0.066 4.066 19 C -0.067 4.067 20 C 0.069 3.931 21 N -0.532 5.532 22 C 0.466 3.534 23 O -0.401 6.401 24 O -0.212 6.212 25 C -0.024 4.024 26 C -0.022 4.022 27 C -0.252 4.252 28 H 0.293 0.707 29 H 0.116 0.884 30 H 0.150 0.850 31 H 0.425 0.575 32 H 0.169 0.831 33 H 0.176 0.824 34 H 0.464 0.536 35 H 0.141 0.859 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.820 -2.139 9.912 18.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.179 4.179 3 Si 0.809 3.191 4 H -0.187 1.187 5 H -0.189 1.189 6 H -0.185 1.185 7 C -0.513 4.513 8 H 0.101 0.899 9 C 0.103 3.897 10 C -0.318 4.318 11 C -0.042 4.042 12 N -0.299 5.299 13 C 0.106 3.894 14 N -0.288 5.288 15 C 0.336 3.664 16 O -0.394 6.394 17 C -0.124 4.124 18 C -0.085 4.085 19 C -0.086 4.086 20 C -0.044 4.044 21 N -0.284 5.284 22 C 0.218 3.782 23 O -0.207 6.207 24 O -0.107 6.107 25 C -0.073 4.073 26 C -0.042 4.042 27 C -0.277 4.277 28 H 0.104 0.896 29 H 0.134 0.866 30 H 0.167 0.833 31 H 0.264 0.736 32 H 0.186 0.814 33 H 0.194 0.806 34 H 0.330 0.670 35 H 0.159 0.841 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.395 -3.785 9.967 19.557 hybrid contribution 0.744 1.173 -0.277 1.416 sum -15.651 -2.612 9.690 18.593 Atomic orbital electron populations 1.69749 1.08755 1.30924 1.34608 1.26777 0.95741 1.04381 0.90959 0.85150 0.78686 0.75335 0.79943 1.18739 1.18916 1.18476 1.19836 0.96192 0.90893 1.44391 0.89922 1.18029 0.91256 0.93300 0.87117 1.22121 1.04875 0.94267 1.10505 1.22196 0.90168 0.97588 0.94225 1.67293 1.15855 1.28775 1.17997 1.18367 0.87430 0.90503 0.93086 1.43201 1.22229 1.09870 1.53520 1.18500 0.85412 0.83499 0.79019 1.90848 1.63825 1.33859 1.50881 1.19448 0.94623 0.94029 1.04286 1.21211 0.94168 0.97806 0.95346 1.20208 0.94189 0.95854 0.98308 1.20007 0.90856 0.95055 0.98464 1.71194 1.21035 1.08232 1.27903 1.22572 0.84093 0.83044 0.88502 1.84696 1.27242 1.35638 1.73119 1.84357 1.26945 1.35469 1.63937 1.19686 0.95148 0.85566 1.06859 1.19727 0.89983 0.99089 0.95357 1.21669 1.01295 0.95769 1.08975 0.89636 0.86577 0.83285 0.73561 0.81409 0.80632 0.66997 0.84097 0.84856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.33 10.70 21.84 0.23 -38.10 16 2 C 0.04 1.76 5.31 85.29 0.45 2.21 16 3 Si 0.99 34.96 29.57 68.60 2.03 36.99 16 4 H -0.26 -9.19 7.11 99.48 0.71 -8.48 16 5 H -0.27 -8.77 7.11 99.48 0.71 -8.06 16 6 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 7 C -0.48 -24.40 9.14 23.52 0.21 -24.18 16 8 H 0.08 4.00 7.87 -2.91 -0.02 3.98 16 9 C 0.11 5.83 5.60 -21.11 -0.12 5.71 16 10 C -0.29 -14.39 9.90 22.84 0.23 -14.17 16 11 C 0.11 5.36 11.15 84.50 0.94 6.30 16 12 N -0.58 -29.60 7.89 -193.58 -1.53 -31.13 16 13 C 0.33 15.92 7.40 132.78 0.98 16.91 16 14 N -0.64 -24.31 5.33 -311.58 -1.66 -25.97 16 15 C 0.55 20.65 7.71 86.68 0.67 21.32 16 16 O -0.52 -24.16 14.62 -4.05 -0.06 -24.21 16 17 C -0.12 -3.38 5.88 -20.06 -0.12 -3.50 16 18 C -0.07 -1.34 9.46 22.27 0.21 -1.13 16 19 C -0.07 -1.23 10.03 22.21 0.22 -1.01 16 20 C 0.07 1.56 7.23 39.49 0.29 1.85 16 21 N -0.53 -10.79 11.36 -422.43 -4.80 -15.59 16 22 C 0.47 8.70 9.54 130.40 1.24 9.94 16 23 O -0.40 -4.02 13.62 -61.42 -0.84 -4.86 16 24 O -0.21 -5.17 10.79 9.37 0.10 -5.07 16 25 C -0.02 -0.61 7.40 22.80 0.17 -0.44 16 26 C -0.02 -0.61 9.60 22.56 0.22 -0.39 16 27 C -0.25 -12.59 8.61 22.99 0.20 -12.40 16 28 H 0.29 12.27 8.29 -92.71 -0.77 11.50 16 29 H 0.12 5.18 8.06 -2.91 -0.02 5.16 16 30 H 0.15 6.14 8.06 -2.91 -0.02 6.12 16 31 H 0.42 12.54 6.71 -92.71 -0.62 11.92 16 32 H 0.17 2.55 6.38 -2.91 -0.02 2.53 16 33 H 0.18 2.12 8.06 -2.91 -0.02 2.10 16 34 H 0.46 -0.80 9.06 -74.05 -0.67 -1.47 16 35 H 0.14 4.14 7.64 -2.91 -0.02 4.12 16 36 H 0.13 6.53 6.11 -2.91 -0.02 6.51 16 Total: -1.00 -72.53 325.36 -0.81 -73.34 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.09 Total: 27.58 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 5.80 Total: 7.01 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -7.75 Total: -110.78 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -0.79 Total: -34.14 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Total: -72.53 -0.81 -73.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610792901.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.840 kcal (2) G-P(sol) polarization free energy of solvation -72.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds