Wall clock time and date at job start Tue Mar 31 2020 14:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31337 * 1 3 3 Si 1.86796 * 120.00045 * 2 1 4 4 H 1.48499 * 109.47423 * 95.01209 * 3 2 1 5 5 H 1.48505 * 109.47084 * 215.01363 * 3 2 1 6 6 H 1.48504 * 109.47213 * 335.01073 * 3 2 1 7 7 C 1.39022 * 119.99865 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99900 * 204.33750 * 7 2 1 9 9 N 1.36875 * 120.00044 * 24.34707 * 7 2 1 10 10 C 1.38254 * 125.62115 * 214.83577 * 9 7 2 11 11 C 1.46698 * 125.44862 * 359.97152 * 10 9 7 12 12 O 1.21600 * 120.00194 * 185.31489 * 11 10 9 13 13 O 1.34867 * 119.99798 * 5.32579 * 11 10 9 14 14 C 1.35954 * 116.99804 * 181.36656 * 13 11 10 15 15 C 1.38684 * 120.06582 * 22.64485 * 14 13 11 16 16 C 1.38166 * 119.96818 * 180.02562 * 15 14 13 17 17 C 1.38272 * 120.09848 * 0.02768 * 16 15 14 18 18 C 1.38243 * 120.12952 * 359.97438 * 17 16 15 19 19 C 1.38347 * 120.03446 * 359.68268 * 18 17 16 20 20 F 1.35096 * 120.05027 * 180.32358 * 19 18 17 21 21 C 1.36225 * 109.09884 * 179.82476 * 10 9 7 22 22 C 1.41657 * 107.74571 * 0.42637 * 21 10 9 23 23 C 1.40034 * 133.33652 * 179.78695 * 22 21 10 24 24 C 1.36578 * 119.82893 * 179.97438 * 23 22 21 25 25 C 1.38860 * 120.60009 * 359.97438 * 24 23 22 26 26 C 1.37843 * 120.63809 * 359.97438 * 25 24 23 27 27 C 1.37829 * 125.62297 * 35.13361 * 9 7 2 28 28 H 0.97004 * 119.99938 * 185.74612 * 1 2 3 29 29 H 1.07999 * 120.01494 * 0.03592 * 15 14 13 30 30 H 1.08001 * 119.95022 * 179.97438 * 16 15 14 31 31 H 1.08006 * 119.93468 * 179.97438 * 17 16 15 32 32 H 1.08001 * 119.98402 * 179.97438 * 18 17 16 33 33 H 1.07997 * 126.12241 * 180.17055 * 21 10 9 34 34 H 1.08005 * 120.08895 * 359.94137 * 23 22 21 35 35 H 1.07994 * 119.69449 * 180.02562 * 24 23 22 36 36 H 1.08002 * 119.67837 * 180.02562 * 25 24 23 37 37 H 1.08002 * 120.08927 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3134 0.0000 0.0000 3 14 2.2474 1.6177 0.0000 4 1 2.6008 1.9853 1.3947 5 1 3.4880 1.4730 -0.8034 6 1 1.3959 2.6809 -0.5915 7 6 2.0085 -1.2040 0.0005 8 1 3.0165 -1.2454 0.3860 9 7 1.4154 -2.3368 -0.4876 10 6 1.6006 -3.6170 0.0005 11 6 2.4667 -3.9810 1.1271 12 8 2.6321 -5.1511 1.4137 13 8 3.0795 -3.0178 1.8452 14 6 3.8906 -3.4244 2.8577 15 6 4.4354 -4.6996 2.8420 16 6 5.2591 -5.1109 3.8723 17 6 5.5407 -4.2531 4.9195 18 6 4.9997 -2.9811 4.9393 19 6 4.1801 -2.5611 3.9069 20 9 3.6565 -1.3158 3.9226 21 6 0.8475 -4.4859 -0.7301 22 6 0.1670 -3.7385 -1.7226 23 6 -0.7263 -4.0861 -2.7434 24 6 -1.2295 -3.1177 -3.5647 25 6 -0.8638 -1.7886 -3.3971 26 6 0.0130 -1.4218 -2.3988 27 6 0.5395 -2.3902 -1.5505 28 1 -0.4850 -0.8359 0.0841 29 1 4.2162 -5.3708 2.0248 30 1 5.6829 -6.1043 3.8600 31 1 6.1845 -4.5776 5.7237 32 1 5.2209 -2.3132 5.7586 33 1 0.7843 -5.5538 -0.5820 34 1 -1.0163 -5.1173 -2.8814 35 1 -1.9186 -3.3881 -4.3510 36 1 -1.2711 -1.0350 -4.0548 37 1 0.2917 -0.3855 -2.2767 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729304056.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:18 Heat of formation + Delta-G solvation = -31.714726 kcal Electronic energy + Delta-G solvation = -26859.115191 eV Core-core repulsion = 22867.923634 eV Total energy + Delta-G solvation = -3991.191557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.01635 -42.91206 -42.04476 -39.47049 -38.06890 -37.85076 -35.78949 -32.45627 -31.91787 -31.49127 -30.81858 -29.91414 -26.64828 -26.23055 -24.41314 -23.51275 -22.90310 -22.16637 -21.39653 -20.19382 -19.54033 -19.01274 -18.13489 -17.90418 -17.54236 -17.12993 -16.66023 -16.49239 -16.34565 -15.96098 -15.65282 -15.38179 -15.31469 -14.91003 -14.87384 -14.39472 -14.14616 -13.90011 -13.88128 -13.58138 -13.04520 -12.97301 -12.86317 -12.70749 -12.55010 -12.31346 -12.21982 -12.00048 -11.64092 -11.22349 -11.00433 -10.67188 -10.01856 -9.65855 -9.48739 -8.99206 -8.67680 -6.52114 -0.46152 0.00767 0.08629 0.88602 0.95693 1.33928 1.41364 1.47723 1.70204 2.06376 2.11288 2.48474 2.51046 2.75900 3.06288 3.14151 3.56517 3.65381 3.83336 4.02492 4.16726 4.22052 4.30099 4.32310 4.47342 4.56957 4.63349 4.78484 4.91926 4.98816 5.00937 5.10726 5.12762 5.17786 5.25133 5.31877 5.36907 5.64064 5.69629 5.78543 5.79482 5.96089 5.98730 6.35329 6.52951 6.80262 7.08386 8.00703 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013632 B = 0.004984 C = 0.003753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2053.473954 B = 5617.005092 C = 7458.254095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C -0.004 4.004 3 Si 1.117 2.883 4 H -0.267 1.267 5 H -0.263 1.263 6 H -0.260 1.260 7 C -0.436 4.436 8 H 0.099 0.901 9 N -0.264 5.264 10 C -0.063 4.063 11 C 0.542 3.458 12 O -0.502 6.502 13 O -0.274 6.274 14 C 0.012 3.988 15 C -0.153 4.153 16 C -0.103 4.103 17 C -0.089 4.089 18 C -0.127 4.127 19 C 0.062 3.938 20 F -0.147 7.147 21 C -0.150 4.150 22 C -0.145 4.145 23 C -0.079 4.079 24 C -0.147 4.147 25 C -0.118 4.118 26 C -0.113 4.113 27 C 0.033 3.967 28 H 0.270 0.730 29 H 0.159 0.841 30 H 0.170 0.830 31 H 0.185 0.815 32 H 0.174 0.826 33 H 0.160 0.840 34 H 0.146 0.854 35 H 0.156 0.844 36 H 0.143 0.857 37 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.086 -5.855 3.954 10.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.214 4.214 3 Si 0.934 3.066 4 H -0.192 1.192 5 H -0.187 1.187 6 H -0.184 1.184 7 C -0.563 4.563 8 H 0.117 0.883 9 N 0.073 4.927 10 C -0.175 4.175 11 C 0.392 3.608 12 O -0.393 6.393 13 O -0.187 6.187 14 C -0.030 4.030 15 C -0.171 4.171 16 C -0.120 4.120 17 C -0.107 4.107 18 C -0.146 4.146 19 C 0.043 3.957 20 F -0.126 7.126 21 C -0.178 4.178 22 C -0.149 4.149 23 C -0.097 4.097 24 C -0.166 4.166 25 C -0.138 4.138 26 C -0.133 4.133 27 C -0.082 4.082 28 H 0.081 0.919 29 H 0.176 0.824 30 H 0.187 0.813 31 H 0.203 0.797 32 H 0.192 0.808 33 H 0.178 0.822 34 H 0.163 0.837 35 H 0.173 0.827 36 H 0.161 0.839 37 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 7.072 -4.224 4.190 9.242 hybrid contribution -0.139 -1.229 0.268 1.265 sum 6.933 -5.453 4.458 9.883 Atomic orbital electron populations 1.70718 1.07759 1.31555 1.35494 1.28188 0.95907 1.05661 0.91672 0.82959 0.74844 0.70002 0.78840 1.19175 1.18686 1.18361 1.20972 1.01447 0.87116 1.46779 0.88342 1.40468 1.29021 1.04768 1.18427 1.19380 1.09505 0.87663 1.00962 1.20190 0.76901 0.83010 0.80726 1.90614 1.61122 1.19039 1.68498 1.84976 1.54036 1.38780 1.40861 1.19654 0.96821 0.96871 0.89690 1.22412 0.97533 0.94143 1.03037 1.21642 0.95884 1.01908 0.92610 1.21617 0.98506 0.91282 0.99263 1.21451 0.96870 0.99303 0.96957 1.17804 1.01686 0.80477 0.95747 1.91486 1.85542 1.39116 1.96480 1.20644 1.00349 0.98751 0.98024 1.18308 1.04054 0.91703 1.00880 1.20579 0.95401 1.00610 0.93133 1.20879 1.02432 0.92043 1.01247 1.21120 0.97484 0.97655 0.97581 1.20404 0.99693 0.97322 0.95854 1.18822 1.00509 0.96389 0.92528 0.91893 0.82382 0.81275 0.79735 0.80833 0.82224 0.83657 0.82680 0.83905 0.87808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.81 11.65 21.67 0.25 -45.55 16 2 C 0.00 -0.19 4.18 84.95 0.36 0.17 16 3 Si 1.12 45.67 29.98 68.60 2.06 47.73 16 4 H -0.27 -10.52 7.11 99.48 0.71 -9.82 16 5 H -0.26 -10.08 7.11 99.48 0.71 -9.38 16 6 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 7 C -0.44 -24.08 8.77 84.09 0.74 -23.34 16 8 H 0.10 5.54 6.74 -2.91 -0.02 5.52 16 9 N -0.26 -14.32 2.66 -331.41 -0.88 -15.20 16 10 C -0.06 -3.22 6.76 39.87 0.27 -2.95 16 11 C 0.54 26.08 7.72 70.03 0.54 26.63 16 12 O -0.50 -22.60 13.18 19.51 0.26 -22.34 16 13 O -0.27 -13.21 7.68 -1.86 -0.01 -13.23 16 14 C 0.01 0.49 6.50 22.54 0.15 0.64 16 15 C -0.15 -5.09 8.54 22.36 0.19 -4.90 16 16 C -0.10 -2.29 10.04 22.26 0.22 -2.06 16 17 C -0.09 -1.62 10.04 22.28 0.22 -1.40 16 18 C -0.13 -3.01 10.02 22.30 0.22 -2.79 16 19 C 0.06 2.21 7.31 22.46 0.16 2.37 16 20 F -0.15 -5.98 17.11 44.97 0.77 -5.21 16 21 C -0.15 -6.84 10.55 22.65 0.24 -6.60 16 22 C -0.15 -6.56 6.16 -21.34 -0.13 -6.69 16 23 C -0.08 -2.83 10.06 22.32 0.22 -2.60 16 24 C -0.15 -4.82 9.97 22.03 0.22 -4.60 16 25 C -0.12 -4.39 10.02 22.32 0.22 -4.17 16 26 C -0.11 -5.27 8.42 22.38 0.19 -5.08 16 27 C 0.03 1.65 5.52 39.07 0.22 1.87 16 28 H 0.27 15.92 7.04 -92.71 -0.65 15.27 16 29 H 0.16 5.70 5.16 -30.63 -0.16 5.55 16 30 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 31 H 0.19 1.55 8.06 -2.91 -0.02 1.53 16 32 H 0.17 2.91 8.06 -2.91 -0.02 2.88 16 33 H 0.16 6.30 8.06 -2.91 -0.02 6.27 16 34 H 0.15 4.12 8.06 -2.91 -0.02 4.10 16 35 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 36 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 37 H 0.10 5.17 6.31 -2.91 -0.02 5.16 16 Total: -1.00 -69.00 325.87 7.81 -61.19 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 1.11 Total: 28.12 kcal Atomic # 6 Polarization: -39.76 SS G_CDS: 4.26 Total: -35.51 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.63 Total: -60.76 kcal Atomic # 8 Polarization: -35.81 SS G_CDS: 0.24 Total: -35.56 kcal Atomic # 9 Polarization: -5.98 SS G_CDS: 0.77 Total: -5.21 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.06 Total: 47.73 kcal Total: -69.00 7.81 -61.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729304056.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.478 kcal (2) G-P(sol) polarization free energy of solvation -68.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds