Wall clock time and date at job start Tue Mar 31 2020 13:53:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34643 * 116.99952 * 2 1 4 4 O 1.21515 * 119.99655 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99941 * 180.02562 * 3 2 1 6 6 C 1.46497 * 119.99864 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47278 * 179.97438 * 6 5 3 8 8 O 1.45201 * 109.46856 * 65.00356 * 7 6 5 9 9 C 1.34796 * 117.00093 * 179.97438 * 8 7 6 10 10 O 1.21532 * 119.99745 * 359.97438 * 9 8 7 11 11 C 1.47280 * 119.99902 * 179.97438 * 9 8 7 12 12 C 1.39740 * 120.22116 * 0.02562 * 11 9 8 13 13 C 1.37777 * 119.92878 * 179.97438 * 12 11 9 14 14 C 1.38674 * 120.39353 * 0.02562 * 13 12 11 15 15 C 1.37911 * 120.45198 * 0.02562 * 14 13 12 16 16 C 1.39109 * 120.05100 * 359.97438 * 15 14 13 17 17 S 1.76208 * 120.19148 * 180.02562 * 16 15 14 18 18 C 1.76204 * 99.99858 * 6.85217 * 17 16 15 19 19 H 1.08003 * 119.99669 * 5.65116 * 18 17 16 20 20 C 1.38815 * 119.99891 * 185.65579 * 18 17 16 21 21 N 1.31547 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99867 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46937 * 119.99997 * 22 20 18 25 25 H 1.48504 * 109.46702 * 240.00086 * 22 20 18 26 26 H 1.08994 * 109.47189 * 59.99899 * 1 2 3 27 27 H 1.09007 * 109.46972 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46741 * 299.99655 * 1 2 3 29 29 H 0.97002 * 120.00105 * 0.02562 * 5 3 2 30 30 H 1.09000 * 109.47041 * 59.99844 * 6 5 3 31 31 H 1.09007 * 109.47420 * 300.00451 * 6 5 3 32 32 H 1.08993 * 109.47586 * 305.00471 * 7 6 5 33 33 H 1.09004 * 109.47423 * 184.99861 * 7 6 5 34 34 H 1.07997 * 120.03821 * 0.24850 * 12 11 9 35 35 H 1.08001 * 119.80466 * 179.97438 * 13 12 11 36 36 H 1.08007 * 119.77547 * 179.97438 * 14 13 12 37 37 H 1.07998 * 119.97372 * 180.02562 * 15 14 13 38 38 H 0.97000 * 119.99823 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0742 2.5755 -0.0011 7 6 5.5910 2.3751 -0.0010 8 8 5.9950 1.7377 -1.2414 9 6 7.3101 1.4891 -1.4017 10 8 8.0975 1.7971 -0.5287 11 6 7.7927 0.8442 -2.6347 12 6 6.8914 0.4886 -3.6416 13 6 7.3495 -0.1139 -4.7929 14 6 8.7020 -0.3712 -4.9597 15 6 9.6053 -0.0279 -3.9758 16 6 9.1632 0.5812 -2.8060 17 16 10.3143 1.0220 -1.5467 18 6 11.8270 0.6623 -2.3756 19 1 11.8167 0.3683 -3.4147 20 6 13.0320 0.7568 -1.6928 21 7 13.0445 1.1153 -0.4272 22 14 14.6358 0.3762 -2.5717 23 1 14.3514 0.0001 -3.9798 24 1 15.5109 1.5757 -2.5463 25 1 15.3199 -0.7503 -1.8874 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9375 0.4567 -0.0013 30 1 3.7816 3.1327 0.8889 31 1 3.7809 3.1324 -0.8911 32 1 5.8740 1.7435 0.8410 33 1 6.0853 3.3425 0.0882 34 1 5.8374 0.6899 -3.5195 35 1 6.6511 -0.3883 -5.5696 36 1 9.0501 -0.8444 -5.8660 37 1 10.6569 -0.2315 -4.1140 38 1 13.8864 1.1809 0.0500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000737371588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:22 Heat of formation + Delta-G solvation = -137.083806 kcal Electronic energy + Delta-G solvation = -24041.903585 eV Core-core repulsion = 20169.214044 eV Total energy + Delta-G solvation = -3872.689541 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.62341 -39.99713 -38.01086 -37.10791 -36.12439 -34.89330 -32.86606 -31.09880 -30.39875 -29.98574 -27.58431 -25.93637 -24.33621 -22.80441 -22.02582 -21.50566 -20.60897 -19.04747 -18.20958 -17.38419 -17.25762 -16.82510 -16.54763 -16.08530 -15.79509 -15.21400 -14.89511 -14.54499 -14.36179 -14.12570 -14.04996 -13.51127 -13.23545 -13.03151 -12.84176 -12.73054 -12.30746 -12.06827 -11.85546 -11.59628 -11.29281 -11.28485 -11.00930 -10.99690 -10.86749 -10.47394 -10.40869 -10.22421 -9.84719 -9.61879 -9.46532 -8.83918 -8.46319 -8.31437 -6.69004 -6.57693 -4.29447 1.30908 1.95874 1.97495 2.61351 2.89472 3.02284 3.05649 3.14074 3.14587 3.30647 3.95766 4.05609 4.34609 4.51981 4.84624 4.88519 4.92760 4.96164 5.01811 5.07458 5.21390 5.25983 5.41034 5.46419 5.55008 5.60783 5.89316 5.96654 6.07886 6.13442 6.26641 6.52197 6.69606 6.79837 6.98977 7.04854 7.15675 7.35624 7.50168 8.06134 8.10044 8.30892 8.89209 10.45966 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.002669 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.993128 B =10488.300912 C =11410.105700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.057 3.943 2 O -0.372 6.372 3 C 0.647 3.353 4 O -0.576 6.576 5 N -0.704 5.704 6 C 0.141 3.859 7 C 0.053 3.947 8 O -0.361 6.361 9 C 0.497 3.503 10 O -0.483 6.483 11 C -0.167 4.167 12 C -0.038 4.038 13 C -0.191 4.191 14 C -0.068 4.068 15 C -0.156 4.156 16 C -0.054 4.054 17 S 0.184 5.816 18 C -0.594 4.594 19 H 0.094 0.906 20 C 0.083 3.917 21 N -0.856 5.856 22 Si 0.922 3.078 23 H -0.266 1.266 24 H -0.276 1.276 25 H -0.276 1.276 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.062 0.938 29 H 0.413 0.587 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.123 0.877 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.807 -1.953 -1.406 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 O -0.286 6.286 3 C 0.400 3.600 4 O -0.466 6.466 5 N -0.364 5.364 6 C 0.019 3.981 7 C -0.021 4.021 8 O -0.280 6.280 9 C 0.343 3.657 10 O -0.372 6.372 11 C -0.181 4.181 12 C -0.058 4.058 13 C -0.215 4.215 14 C -0.090 4.090 15 C -0.180 4.180 16 C -0.174 4.174 17 S 0.450 5.550 18 C -0.740 4.740 19 H 0.112 0.888 20 C -0.128 4.128 21 N -0.489 5.489 22 Si 0.747 3.253 23 H -0.191 1.191 24 H -0.201 1.201 25 H -0.201 1.201 26 H 0.082 0.918 27 H 0.120 0.880 28 H 0.081 0.919 29 H 0.248 0.752 30 H 0.111 0.889 31 H 0.102 0.898 32 H 0.098 0.902 33 H 0.111 0.889 34 H 0.141 0.859 35 H 0.132 0.868 36 H 0.132 0.868 37 H 0.159 0.841 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -17.679 -0.802 0.453 17.703 hybrid contribution 1.301 -1.015 -1.693 2.364 sum -16.378 -1.817 -1.240 16.525 Atomic orbital electron populations 1.23190 0.74387 1.03470 1.02698 1.86259 1.24217 1.31074 1.87051 1.18125 0.83428 0.82171 0.76322 1.91002 1.64700 1.34905 1.55967 1.44641 1.03038 1.10884 1.77828 1.21483 0.89107 0.83450 1.04055 1.23198 0.93155 0.99801 0.85965 1.86566 1.27538 1.73601 1.40245 1.21177 0.79639 0.77355 0.87559 1.90860 1.54631 1.49195 1.42480 1.18263 0.92657 1.12500 0.94646 1.21084 0.98344 0.94131 0.92193 1.20721 0.95566 1.06524 0.98679 1.21165 0.93353 0.96758 0.97765 1.21404 1.00965 1.02099 0.93570 1.23068 0.96690 0.96849 1.00797 1.84646 0.93078 1.65775 1.11523 1.24066 0.93944 1.54695 1.01315 0.88835 1.25131 0.99739 0.93171 0.94765 1.69970 1.28346 1.41786 1.08751 0.86052 0.80970 0.78482 0.79793 1.19054 1.20140 1.20143 0.91819 0.87973 0.91903 0.75187 0.88887 0.89759 0.90228 0.88902 0.85890 0.86778 0.86771 0.84113 0.91412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -3.92 10.62 -40.33 -0.43 -4.35 16 3 C 0.65 7.80 8.75 54.06 0.47 8.27 16 4 O -0.58 -8.43 16.13 -19.28 -0.31 -8.74 16 5 N -0.70 -7.28 5.51 -65.28 -0.36 -7.64 16 6 C 0.14 1.36 6.07 -4.05 -0.02 1.34 16 7 C 0.05 0.60 5.61 37.15 0.21 0.81 16 8 O -0.36 -5.22 9.42 -40.75 -0.38 -5.60 16 9 C 0.50 9.24 7.87 34.41 0.27 9.51 16 10 O -0.48 -10.36 13.57 -19.29 -0.26 -10.62 16 11 C -0.17 -3.23 5.89 -104.77 -0.62 -3.85 16 12 C -0.04 -0.61 9.61 -39.19 -0.38 -0.99 16 13 C -0.19 -2.88 10.02 -39.59 -0.40 -3.28 16 14 C -0.07 -1.11 10.03 -39.54 -0.40 -1.51 16 15 C -0.16 -3.11 9.22 -39.38 -0.36 -3.48 16 16 C -0.05 -1.19 6.15 -38.37 -0.24 -1.43 16 17 S 0.18 4.72 18.56 -107.50 -2.00 2.73 16 18 C -0.59 -15.74 9.00 30.95 0.28 -15.46 16 19 H 0.09 2.35 4.98 -52.48 -0.26 2.09 16 20 C 0.08 2.20 5.49 -17.46 -0.10 2.11 16 21 N -0.86 -23.84 13.22 55.49 0.73 -23.11 16 22 Si 0.92 20.00 29.55 -169.99 -5.02 14.98 16 23 H -0.27 -5.62 7.11 56.52 0.40 -5.22 16 24 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 25 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.41 3.86 8.58 -40.82 -0.35 3.51 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 34 H 0.12 1.68 7.61 -52.49 -0.40 1.28 16 35 H 0.11 1.38 8.06 -52.49 -0.42 0.95 16 36 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 37 H 0.14 2.92 5.03 -52.49 -0.26 2.66 16 38 H 0.28 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 349.78 15.07 5.27 5.27 Total: -1.00 -32.36 349.78 -7.18 -39.55 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: -4.21 Total: 4.01 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.21 Total: -6.47 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.37 Total: -30.75 kcal Atomic # 8 Polarization: -27.93 SS G_CDS: -1.38 Total: -29.32 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Atomic # 16 Polarization: 4.72 SS G_CDS: -2.00 Total: 2.73 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.36 -7.18 -39.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737371588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.539 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.084 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds