Wall clock time and date at job start Tue Mar 31 2020 13:53:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34643 * 116.99952 * 2 1 4 4 O 1.21515 * 119.99655 * 359.97438 * 3 2 1 5 5 N 1.34777 * 119.99941 * 180.02562 * 3 2 1 6 6 C 1.46497 * 119.99864 * 179.97438 * 5 3 2 7 7 C 1.52993 * 109.47278 * 179.97438 * 6 5 3 8 8 O 1.45201 * 109.46856 * 65.00356 * 7 6 5 9 9 C 1.34796 * 117.00093 * 179.97438 * 8 7 6 10 10 O 1.21532 * 119.99745 * 359.97438 * 9 8 7 11 11 C 1.47280 * 119.99902 * 179.97438 * 9 8 7 12 12 C 1.39740 * 120.22116 * 0.02562 * 11 9 8 13 13 C 1.37777 * 119.92878 * 179.97438 * 12 11 9 14 14 C 1.38674 * 120.39353 * 0.02562 * 13 12 11 15 15 C 1.37911 * 120.45198 * 0.02562 * 14 13 12 16 16 C 1.39109 * 120.05100 * 359.97438 * 15 14 13 17 17 S 1.76208 * 120.19148 * 180.02562 * 16 15 14 18 18 C 1.76204 * 99.99858 * 6.85217 * 17 16 15 19 19 H 1.08003 * 119.99669 * 5.65116 * 18 17 16 20 20 C 1.38815 * 119.99891 * 185.65579 * 18 17 16 21 21 N 1.31547 * 119.99913 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99867 * 180.02562 * 20 18 17 23 23 H 1.48492 * 109.47146 * 359.97438 * 22 20 18 24 24 H 1.48497 * 109.46937 * 119.99997 * 22 20 18 25 25 H 1.48504 * 109.46702 * 240.00086 * 22 20 18 26 26 H 1.08994 * 109.47189 * 59.99899 * 1 2 3 27 27 H 1.09007 * 109.46972 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46741 * 299.99655 * 1 2 3 29 29 H 0.97002 * 120.00105 * 0.02562 * 5 3 2 30 30 H 1.09000 * 109.47041 * 59.99844 * 6 5 3 31 31 H 1.09007 * 109.47420 * 300.00451 * 6 5 3 32 32 H 1.08993 * 109.47586 * 305.00471 * 7 6 5 33 33 H 1.09004 * 109.47423 * 184.99861 * 7 6 5 34 34 H 1.07997 * 120.03821 * 0.24850 * 12 11 9 35 35 H 1.08001 * 119.80466 * 179.97438 * 13 12 11 36 36 H 1.08007 * 119.77547 * 179.97438 * 14 13 12 37 37 H 1.07998 * 119.97372 * 180.02562 * 15 14 13 38 38 H 0.97000 * 119.99823 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 -0.0005 5 7 3.4092 1.2702 -0.0005 6 6 4.0742 2.5755 -0.0011 7 6 5.5910 2.3751 -0.0010 8 8 5.9950 1.7377 -1.2414 9 6 7.3101 1.4891 -1.4017 10 8 8.0975 1.7971 -0.5287 11 6 7.7927 0.8442 -2.6347 12 6 6.8914 0.4886 -3.6416 13 6 7.3495 -0.1139 -4.7929 14 6 8.7020 -0.3712 -4.9597 15 6 9.6053 -0.0279 -3.9758 16 6 9.1632 0.5812 -2.8060 17 16 10.3143 1.0220 -1.5467 18 6 11.8270 0.6623 -2.3756 19 1 11.8167 0.3683 -3.4147 20 6 13.0320 0.7568 -1.6928 21 7 13.0445 1.1153 -0.4272 22 14 14.6358 0.3762 -2.5717 23 1 14.3514 0.0001 -3.9798 24 1 15.5109 1.5757 -2.5463 25 1 15.3199 -0.7503 -1.8874 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 3.9375 0.4567 -0.0013 30 1 3.7816 3.1327 0.8889 31 1 3.7809 3.1324 -0.8911 32 1 5.8740 1.7435 0.8410 33 1 6.0853 3.3425 0.0882 34 1 5.8374 0.6899 -3.5195 35 1 6.6511 -0.3883 -5.5696 36 1 9.0501 -0.8444 -5.8660 37 1 10.6569 -0.2315 -4.1140 38 1 13.8864 1.1809 0.0500 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000737371588.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:53:21 Heat of formation + Delta-G solvation = -158.933444 kcal Electronic energy + Delta-G solvation = -24042.851057 eV Core-core repulsion = 20169.214044 eV Total energy + Delta-G solvation = -3873.637013 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.086 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.59982 -41.30179 -39.40417 -38.08905 -37.34124 -35.91773 -34.79000 -32.46907 -31.86066 -31.00097 -28.25020 -27.86549 -25.62571 -23.88918 -23.43705 -22.42776 -21.99825 -20.02602 -19.81123 -18.86083 -18.24193 -18.00268 -17.57060 -17.27832 -17.24894 -16.96530 -15.99987 -15.76901 -15.66121 -15.19852 -15.06034 -14.92308 -14.64510 -14.38125 -14.06467 -13.73618 -13.49058 -13.32820 -13.01111 -12.93633 -12.91378 -12.80607 -12.53435 -12.05148 -11.88060 -11.79248 -11.77812 -11.63944 -11.46795 -11.38988 -10.45594 -10.33165 -10.10867 -9.89310 -8.53209 -8.48600 -6.28100 -0.14107 0.51844 1.19068 1.26531 1.36198 1.45307 1.55823 1.66592 1.69143 1.71499 2.19171 2.84243 2.97355 3.19039 3.29156 3.57606 3.88231 4.03371 4.06821 4.25672 4.36019 4.37161 4.40116 4.49175 4.62245 4.64292 4.70760 4.75046 4.80404 5.09631 5.12234 5.31714 5.36343 5.38058 5.46235 5.56186 5.65846 6.07535 6.14280 6.29887 6.87846 6.94055 7.23018 8.57579 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.021418 B = 0.002669 C = 0.002453 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.993128 B =10488.300912 C =11410.105700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.377 6.377 3 C 0.646 3.354 4 O -0.606 6.606 5 N -0.699 5.699 6 C 0.150 3.850 7 C 0.052 3.948 8 O -0.348 6.348 9 C 0.501 3.499 10 O -0.515 6.515 11 C -0.174 4.174 12 C -0.034 4.034 13 C -0.163 4.163 14 C -0.057 4.057 15 C -0.176 4.176 16 C -0.066 4.066 17 S 0.072 5.928 18 C -0.600 4.600 19 H 0.098 0.902 20 C 0.026 3.974 21 N -0.903 5.903 22 Si 0.993 3.007 23 H -0.256 1.256 24 H -0.272 1.272 25 H -0.270 1.270 26 H 0.062 0.938 27 H 0.134 0.866 28 H 0.062 0.938 29 H 0.418 0.582 30 H 0.110 0.890 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.157 0.843 35 H 0.165 0.835 36 H 0.154 0.846 37 H 0.125 0.875 38 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.359 -3.169 -4.186 21.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.290 6.290 3 C 0.399 3.601 4 O -0.498 6.498 5 N -0.359 5.359 6 C 0.028 3.972 7 C -0.022 4.022 8 O -0.266 6.266 9 C 0.348 3.652 10 O -0.406 6.406 11 C -0.185 4.185 12 C -0.053 4.053 13 C -0.185 4.185 14 C -0.078 4.078 15 C -0.201 4.201 16 C -0.183 4.183 17 S 0.332 5.668 18 C -0.747 4.747 19 H 0.115 0.885 20 C -0.180 4.180 21 N -0.538 5.538 22 Si 0.815 3.185 23 H -0.179 1.179 24 H -0.197 1.197 25 H -0.195 1.195 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.081 0.919 29 H 0.254 0.746 30 H 0.128 0.872 31 H 0.103 0.897 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.175 0.825 35 H 0.182 0.818 36 H 0.171 0.829 37 H 0.142 0.858 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.325 -2.052 -2.390 20.567 hybrid contribution 1.625 -0.692 -0.996 2.028 sum -18.699 -2.744 -3.386 19.200 Atomic orbital electron populations 1.23502 0.72696 1.05597 1.02655 1.86271 1.25912 1.30148 1.86709 1.18257 0.83667 0.82234 0.75979 1.90981 1.65393 1.35948 1.57468 1.44661 1.02731 1.11327 1.77201 1.21469 0.87438 0.83372 1.04925 1.23445 0.94280 0.99843 0.84611 1.86531 1.24948 1.73271 1.41802 1.21223 0.80558 0.76486 0.86979 1.90871 1.55893 1.50296 1.43586 1.18644 0.92222 1.11781 0.95862 1.21514 0.99376 0.93065 0.91349 1.21358 0.95663 1.02775 0.98747 1.21619 0.93427 0.95045 0.97728 1.21448 1.01220 1.03172 0.94245 1.22976 0.96793 0.98393 1.00181 1.84772 0.95393 1.71209 1.15442 1.24253 0.94310 1.54618 1.01470 0.88450 1.26138 1.03304 0.93090 0.95476 1.70111 1.29060 1.44119 1.10480 0.84983 0.76332 0.78338 0.78879 1.17944 1.19702 1.19537 0.91942 0.84797 0.91934 0.74575 0.87190 0.89701 0.89906 0.88452 0.82524 0.81762 0.82868 0.85770 0.91397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.62 10.56 113.37 1.20 1.82 16 2 O -0.38 -7.22 10.62 -55.53 -0.59 -7.81 16 3 C 0.65 14.48 8.75 129.79 1.14 15.61 16 4 O -0.61 -16.94 16.13 19.79 0.32 -16.62 16 5 N -0.70 -13.11 5.51 -590.85 -3.26 -16.36 16 6 C 0.15 2.60 6.07 86.38 0.52 3.13 16 7 C 0.05 1.11 5.61 71.98 0.40 1.51 16 8 O -0.35 -9.49 9.42 -57.07 -0.54 -10.03 16 9 C 0.50 18.57 7.87 70.20 0.55 19.13 16 10 O -0.52 -23.08 13.57 19.73 0.27 -22.82 16 11 C -0.17 -6.52 5.89 -19.96 -0.12 -6.63 16 12 C -0.03 -0.94 9.61 22.52 0.22 -0.72 16 13 C -0.16 -3.95 10.02 22.26 0.22 -3.73 16 14 C -0.06 -1.63 10.03 22.30 0.22 -1.41 16 15 C -0.18 -6.92 9.22 22.40 0.21 -6.72 16 16 C -0.07 -2.93 6.15 23.05 0.14 -2.79 16 17 S 0.07 3.95 18.56 -56.49 -1.05 2.90 16 18 C -0.60 -33.56 9.00 67.96 0.61 -32.95 16 19 H 0.10 5.12 4.98 -2.91 -0.01 5.11 16 20 C 0.03 1.43 5.49 84.87 0.47 1.90 16 21 N -0.90 -53.35 13.22 21.65 0.29 -53.07 16 22 Si 0.99 42.38 29.55 68.60 2.03 44.41 16 23 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 24 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 25 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.13 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.42 6.98 8.58 -92.71 -0.80 6.19 16 30 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.10 2.05 8.14 -2.38 -0.02 2.03 16 34 H 0.16 3.38 7.61 -2.91 -0.02 3.35 16 35 H 0.16 2.56 8.06 -2.91 -0.02 2.53 16 36 H 0.15 3.23 8.06 -2.91 -0.02 3.20 16 37 H 0.12 5.26 5.03 -2.91 -0.01 5.25 16 38 H 0.28 15.07 8.31 -92.71 -0.77 14.30 16 Total: -1.00 -76.24 349.78 3.57 -72.67 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: 0.32 Total: 18.57 kcal Atomic # 6 Polarization: -17.64 SS G_CDS: 5.78 Total: -11.85 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -2.97 Total: -69.43 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -0.54 Total: -57.27 kcal Atomic # 14 Polarization: 42.38 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 3.95 SS G_CDS: -1.05 Total: 2.90 kcal Total: -76.24 3.57 -72.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000737371588.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.265 kcal (2) G-P(sol) polarization free energy of solvation -76.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds