Wall clock time and date at job start Tue Mar 31 2020 14:53:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.38237 * 120.00736 * 2 1 4 4 C 1.38219 * 120.01237 * 180.23139 * 3 2 1 5 5 C 1.38263 * 120.02588 * 359.48578 * 4 3 2 6 6 C 1.50696 * 119.99392 * 180.25615 * 5 4 3 7 7 C 1.52994 * 109.47210 * 90.00024 * 6 5 4 8 8 C 1.50709 * 109.47265 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99933 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99997 * 179.97438 * 8 7 6 11 11 C 1.37096 * 120.00159 * 179.97438 * 10 8 7 12 12 H 1.08001 * 119.99593 * 16.51466 * 11 10 8 13 13 C 1.38945 * 120.00268 * 196.51509 * 11 10 8 14 14 N 1.31412 * 120.00003 * 21.64350 * 13 11 10 15 15 Si 1.86806 * 119.99928 * 201.64701 * 13 11 10 16 16 H 1.48491 * 109.47322 * 89.99921 * 15 13 11 17 17 H 1.48504 * 109.46933 * 209.99879 * 15 13 11 18 18 H 1.48503 * 109.46750 * 329.99500 * 15 13 11 19 19 C 1.46501 * 120.00195 * 359.97438 * 10 8 7 20 20 C 1.50699 * 109.47393 * 84.06414 * 19 10 8 21 21 O 1.20835 * 119.99918 * 0.02562 * 20 19 10 22 22 O 1.34229 * 120.00374 * 180.02562 * 20 19 10 23 23 C 1.38190 * 120.01193 * 0.23403 * 5 4 3 24 24 C 1.38329 * 120.00327 * 179.69387 * 2 1 3 25 25 Cl 1.73597 * 120.01745 * 0.02562 * 24 2 1 26 26 H 1.09005 * 109.47189 * 270.31054 * 1 2 3 27 27 H 1.09003 * 109.46615 * 30.30144 * 1 2 3 28 28 H 1.08996 * 109.46992 * 150.30440 * 1 2 3 29 29 H 1.08006 * 119.99457 * 359.97438 * 3 2 1 30 30 H 1.07997 * 119.98694 * 179.75944 * 4 3 2 31 31 H 1.08998 * 109.47362 * 209.99984 * 6 5 4 32 32 H 1.09004 * 109.47345 * 329.99847 * 6 5 4 33 33 H 1.09000 * 109.47189 * 299.99500 * 7 6 5 34 34 H 1.08995 * 109.47583 * 60.00025 * 7 6 5 35 35 H 0.97006 * 119.99567 * 180.02562 * 14 13 11 36 36 H 1.08995 * 109.47147 * 204.06338 * 19 10 8 37 37 H 1.09003 * 109.47056 * 324.06914 * 19 10 8 38 38 H 0.96700 * 116.99985 * 180.02562 * 22 20 19 39 39 H 1.08004 * 120.00627 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1971 0.0000 4 6 3.5805 1.1972 -0.0048 5 6 4.2725 0.0002 0.0011 6 6 5.7795 0.0012 0.0016 7 6 6.2890 0.0084 1.4442 8 6 7.7960 0.0100 1.4448 9 8 8.4029 0.0054 0.3947 10 7 8.4695 0.0166 2.6122 11 6 9.8404 0.0176 2.6128 12 1 10.3805 0.2791 1.7149 13 6 10.5350 -0.3179 3.7685 14 7 9.9476 -1.0280 4.7053 15 14 12.3037 0.2404 3.9905 16 1 12.3241 1.5655 4.6605 17 1 13.0336 -0.7475 4.8251 18 1 12.9595 0.3470 2.6624 19 6 7.7365 0.0227 3.8807 20 6 7.3589 -1.3888 4.2496 21 8 7.6706 -2.3060 3.5272 22 8 6.6764 -1.6273 5.3805 23 6 3.5825 -1.1971 0.0069 24 6 2.1987 -1.1979 0.0064 25 17 1.3313 -2.7016 0.0138 26 1 -0.3634 0.0056 1.0277 27 1 -0.3633 0.8873 -0.5185 28 1 -0.3633 -0.8927 -0.5091 29 1 1.6584 2.1325 -0.0004 30 1 4.1202 2.1327 -0.0088 31 1 6.1436 -0.8909 -0.5078 32 1 6.1425 0.8890 -0.5163 33 1 5.9249 0.9006 1.9537 34 1 5.9261 -0.8794 1.9622 35 1 10.4324 -1.2619 5.5123 36 1 8.3669 0.4463 4.6625 37 1 6.8338 0.6246 3.7758 38 1 6.4572 -2.5488 5.5750 39 1 4.1231 -2.1320 0.0120 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000738589471.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:59 Heat of formation + Delta-G solvation = -131.000959 kcal Electronic energy + Delta-G solvation = -25084.674489 eV Core-core repulsion = 21210.205013 eV Total energy + Delta-G solvation = -3874.469475 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 325.091 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.29717 -40.59235 -39.89648 -37.52178 -37.06399 -36.39046 -35.41271 -33.78069 -32.17211 -31.68029 -29.52756 -28.36786 -26.58117 -24.42749 -23.75886 -22.81939 -21.76020 -20.52557 -19.02718 -18.70889 -18.20713 -17.47916 -17.07979 -16.97853 -16.42747 -16.23237 -16.18145 -15.92450 -15.75239 -15.10613 -14.73402 -14.52422 -14.17688 -13.81188 -13.63001 -13.52046 -13.41885 -13.29641 -13.15305 -13.06056 -12.66787 -12.45023 -12.40436 -12.26581 -12.17545 -12.13741 -12.09380 -11.85456 -11.63202 -11.52179 -10.95917 -10.46550 -9.87314 -9.78757 -9.43836 -8.44021 -5.95544 0.19197 0.29355 1.16330 1.36923 1.43012 1.54839 1.69783 1.87589 2.25913 2.54162 2.61327 2.96046 3.11521 3.63324 3.81261 3.92249 4.08641 4.11040 4.20966 4.24611 4.34739 4.43238 4.63857 4.64856 4.74969 4.76312 4.82636 4.90611 4.94007 5.00084 5.17666 5.24519 5.31051 5.45830 5.47270 5.62055 5.90148 5.94616 6.01558 6.38845 7.10917 7.30322 7.45344 7.93360 8.62674 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019993 B = 0.003116 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1400.173543 B = 8982.449268 C = 9627.172199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.087 4.087 3 C -0.102 4.102 4 C -0.106 4.106 5 C -0.078 4.078 6 C -0.052 4.052 7 C -0.113 4.113 8 C 0.448 3.552 9 O -0.621 6.621 10 N -0.446 5.446 11 C -0.343 4.343 12 H 0.079 0.921 13 C 0.000 4.000 14 N -0.893 5.893 15 Si 0.991 3.009 16 H -0.258 1.258 17 H -0.282 1.282 18 H -0.279 1.279 19 C 0.143 3.857 20 C 0.496 3.504 21 O -0.550 6.550 22 O -0.518 6.518 23 C -0.119 4.119 24 C -0.048 4.048 25 Cl -0.074 7.074 26 H 0.082 0.918 27 H 0.090 0.910 28 H 0.068 0.932 29 H 0.164 0.836 30 H 0.149 0.851 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.114 0.886 34 H 0.075 0.925 35 H 0.274 0.726 36 H 0.120 0.880 37 H 0.123 0.877 38 H 0.413 0.587 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.582 5.334 -1.426 20.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.087 4.087 3 C -0.120 4.120 4 C -0.124 4.124 5 C -0.078 4.078 6 C -0.090 4.090 7 C -0.153 4.153 8 C 0.239 3.761 9 O -0.507 6.507 10 N -0.165 5.165 11 C -0.470 4.470 12 H 0.097 0.903 13 C -0.202 4.202 14 N -0.532 5.532 15 Si 0.815 3.185 16 H -0.182 1.182 17 H -0.208 1.208 18 H -0.204 1.204 19 C 0.017 3.983 20 C 0.338 3.662 21 O -0.439 6.439 22 O -0.331 6.331 23 C -0.138 4.138 24 C -0.074 4.074 25 Cl -0.045 7.045 26 H 0.101 0.899 27 H 0.109 0.891 28 H 0.086 0.914 29 H 0.181 0.819 30 H 0.166 0.834 31 H 0.074 0.926 32 H 0.100 0.900 33 H 0.132 0.868 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.137 0.863 37 H 0.141 0.859 38 H 0.272 0.728 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -19.127 5.269 -2.019 19.942 hybrid contribution 1.273 -1.434 0.353 1.950 sum -17.854 3.834 -1.666 18.337 Atomic orbital electron populations 1.20907 0.88611 1.04141 1.03601 1.20114 0.98023 0.91058 0.99547 1.21334 0.93621 0.97989 0.99019 1.21436 0.94765 0.97868 0.98347 1.19783 0.94817 0.93243 0.99957 1.20145 0.90189 1.03446 0.95194 1.21509 0.90425 1.04183 0.99207 1.21041 0.90914 0.80765 0.83354 1.90483 1.71683 1.56286 1.32293 1.43633 1.05862 1.63180 1.03810 1.19643 0.81561 1.46683 0.99162 0.90303 1.25949 1.04006 0.94579 0.95637 1.69891 1.40253 1.33229 1.09856 0.84961 0.76951 0.78580 0.77967 1.18244 1.20763 1.20371 1.20852 0.98179 0.90185 0.89095 1.23892 0.71636 0.93371 0.77285 1.90611 1.52002 1.47531 1.53804 1.84449 1.69233 1.37201 1.42174 1.20998 0.92479 0.98874 1.01445 1.20905 0.91984 0.87309 1.07225 1.98343 1.76657 1.32501 1.96977 0.89905 0.89116 0.91354 0.81888 0.83370 0.92643 0.89970 0.86826 0.90640 0.91601 0.86252 0.85898 0.72779 0.86188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.54 9.61 71.24 0.68 -0.85 16 2 C -0.09 -1.64 5.88 -19.84 -0.12 -1.75 16 3 C -0.10 -1.70 9.70 22.26 0.22 -1.49 16 4 C -0.11 -2.15 9.70 22.27 0.22 -1.93 16 5 C -0.08 -2.02 5.13 -19.87 -0.10 -2.12 16 6 C -0.05 -1.66 4.63 29.85 0.14 -1.52 16 7 C -0.11 -3.99 4.29 29.85 0.13 -3.87 16 8 C 0.45 21.72 7.41 87.66 0.65 22.37 16 9 O -0.62 -34.94 15.62 -3.05 -0.05 -34.99 16 10 N -0.45 -22.40 2.18 -639.61 -1.39 -23.80 16 11 C -0.34 -19.22 9.34 84.04 0.79 -18.44 16 12 H 0.08 4.76 7.37 -2.91 -0.02 4.74 16 13 C 0.00 -0.01 4.87 84.93 0.41 0.40 16 14 N -0.89 -46.35 9.28 21.66 0.20 -46.14 16 15 Si 0.99 41.86 29.60 68.60 2.03 43.89 16 16 H -0.26 -10.07 7.11 99.48 0.71 -9.36 16 17 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 18 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 19 C 0.14 5.93 4.97 85.63 0.43 6.36 16 20 C 0.50 21.30 5.86 71.24 0.42 21.72 16 21 O -0.55 -28.69 16.79 21.94 0.37 -28.32 16 22 O -0.52 -17.36 13.42 -51.41 -0.69 -18.05 16 23 C -0.12 -3.18 9.49 22.29 0.21 -2.97 16 24 C -0.05 -1.12 6.31 22.32 0.14 -0.98 16 25 Cl -0.07 -1.63 27.30 -2.72 -0.07 -1.71 16 26 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 27 H 0.09 0.82 8.09 -2.39 -0.02 0.80 16 28 H 0.07 0.97 6.90 -2.39 -0.02 0.95 16 29 H 0.16 1.63 8.06 -2.91 -0.02 1.61 16 30 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 31 H 0.05 2.02 8.04 -2.39 -0.02 2.00 16 32 H 0.08 2.59 8.04 -2.38 -0.02 2.57 16 33 H 0.11 3.18 7.41 -2.39 -0.02 3.16 16 34 H 0.08 2.73 7.52 -2.39 -0.02 2.71 16 35 H 0.27 13.48 8.31 -92.70 -0.77 12.71 16 36 H 0.12 5.19 6.37 -2.39 -0.02 5.17 16 37 H 0.12 3.88 6.69 -2.39 -0.02 3.86 16 38 H 0.41 10.45 9.10 -74.06 -0.67 9.78 16 39 H 0.12 3.39 8.06 -2.91 -0.02 3.37 16 Total: -1.00 -74.17 348.90 5.03 -69.14 By element: Atomic # 1 Polarization: 24.61 SS G_CDS: 0.42 Total: 25.04 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: 4.21 Total: 14.93 kcal Atomic # 7 Polarization: -68.75 SS G_CDS: -1.19 Total: -69.94 kcal Atomic # 8 Polarization: -80.98 SS G_CDS: -0.37 Total: -81.35 kcal Atomic # 14 Polarization: 41.86 SS G_CDS: 2.03 Total: 43.89 kcal Atomic # 17 Polarization: -1.63 SS G_CDS: -0.07 Total: -1.71 kcal Total: -74.17 5.03 -69.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000738589471.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.859 kcal (2) G-P(sol) polarization free energy of solvation -74.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds