Wall clock time and date at job start Tue Mar 31 2020 14:34:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00135 * 2 1 4 4 H 1.48503 * 109.46970 * 275.73163 * 3 2 1 5 5 H 1.48508 * 109.47307 * 35.72717 * 3 2 1 6 6 H 1.48498 * 109.47082 * 155.72913 * 3 2 1 7 7 C 1.38949 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99987 * 337.71166 * 7 2 1 9 9 N 1.37095 * 119.99767 * 157.71514 * 7 2 1 10 10 C 1.46505 * 120.00040 * 322.61820 * 9 7 2 11 11 C 1.50707 * 109.47205 * 264.13186 * 10 9 7 12 12 O 1.20830 * 119.99710 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.34776 * 120.00435 * 142.62051 * 9 7 2 15 15 O 1.21297 * 119.99678 * 0.02562 * 14 9 7 16 16 C 1.50702 * 120.00363 * 179.97438 * 14 9 7 17 17 H 1.08996 * 115.55830 * 34.31109 * 16 14 9 18 18 C 1.52995 * 117.49899 * 248.62146 * 16 14 9 19 19 C 1.53002 * 117.49652 * 179.97438 * 16 14 9 20 20 H 1.08996 * 117.51641 * 214.96979 * 19 16 14 21 21 C 1.50697 * 117.50202 * 0.02562 * 19 16 14 22 22 C 1.38213 * 119.99899 * 60.03073 * 21 19 16 23 23 C 1.38427 * 119.99772 * 179.97438 * 22 21 19 24 24 F 1.35097 * 119.99736 * 180.02562 * 23 22 21 25 25 C 1.38473 * 120.00232 * 359.97438 * 23 22 21 26 26 C 1.38162 * 119.99772 * 0.02562 * 25 23 22 27 27 C 1.38424 * 120.00242 * 240.01163 * 21 19 16 28 28 F 1.35107 * 119.99798 * 0.02562 * 27 21 19 29 29 H 0.96999 * 119.99637 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47169 * 24.12852 * 10 9 7 31 31 H 1.08993 * 109.47211 * 144.13459 * 10 9 7 32 32 H 0.96699 * 116.99510 * 180.02562 * 13 11 10 33 33 H 1.09005 * 117.50053 * 145.02078 * 18 16 14 34 34 H 1.08999 * 117.52049 * 359.97438 * 18 16 14 35 35 H 1.07998 * 119.99977 * 0.02562 * 22 21 19 36 36 H 1.07997 * 119.99641 * 180.02562 * 25 23 22 37 37 H 1.07999 * 119.99661 * 180.28296 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3746 2.1163 -1.3931 5 1 1.5114 2.6148 0.8176 6 1 3.6010 1.4082 0.5755 7 6 2.0088 -1.2034 0.0005 8 1 1.5293 -2.1036 0.3557 9 7 3.3030 -1.2479 -0.4497 10 6 3.7089 -0.4288 -1.5945 11 6 3.6421 -1.2557 -2.8527 12 8 3.2910 -2.4106 -2.7987 13 8 3.9717 -0.7089 -4.0334 14 6 4.2019 -2.0452 0.1608 15 8 3.8657 -2.7238 1.1084 16 6 5.6244 -2.0946 -0.3345 17 1 6.0193 -1.1566 -0.7246 18 6 6.0971 -3.3901 -0.9969 19 6 6.5968 -3.0187 0.4012 20 1 7.6316 -2.6892 0.4947 21 6 6.0588 -3.8104 1.5652 22 6 5.0224 -4.7043 1.3729 23 6 4.5286 -5.4319 2.4420 24 9 3.5159 -6.3060 2.2539 25 6 5.0734 -5.2644 3.7040 26 6 6.1094 -4.3708 3.8962 27 6 6.6029 -3.6425 2.8269 28 9 7.6159 -2.7686 3.0149 29 1 -0.4849 0.8401 -0.0004 30 1 3.0387 0.4260 -1.6856 31 1 4.7294 -0.0762 -1.4454 32 1 3.9129 -1.2786 -4.8126 33 1 6.8032 -3.3044 -1.8230 34 1 5.3798 -4.2071 -1.0744 35 1 4.5984 -4.8358 0.3883 36 1 4.6883 -5.8324 4.5380 37 1 6.5373 -4.2436 4.8797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739077354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:17 Heat of formation + Delta-G solvation = -128.589659 kcal Electronic energy + Delta-G solvation = -28388.783657 eV Core-core repulsion = 23962.622063 eV Total energy + Delta-G solvation = -4426.161594 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.096 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -48.65591 -48.49771 -40.29216 -39.51517 -38.08020 -36.27578 -35.64604 -34.71995 -32.23340 -30.68528 -29.62750 -28.13725 -26.04677 -24.24025 -22.94580 -22.24690 -21.78786 -20.69802 -18.73637 -17.87491 -17.64657 -17.38843 -17.08668 -16.69200 -16.46479 -16.08725 -15.53041 -15.41257 -15.00270 -14.96038 -14.55376 -14.13679 -14.08575 -14.04338 -13.52630 -13.09789 -12.92174 -12.77520 -12.57547 -12.46066 -12.28710 -12.08000 -11.72236 -11.42234 -11.17836 -11.06735 -10.79580 -10.72425 -10.51520 -10.28979 -10.17335 -10.02089 -9.30839 -9.01011 -8.20612 -8.04809 -7.90372 -6.51789 -4.10375 1.27044 1.41680 2.63104 2.87967 3.01076 3.13692 3.17063 3.39056 3.77384 3.98426 4.11357 4.17635 4.49073 4.51083 4.69909 4.77062 4.86074 5.04415 5.06335 5.19242 5.24651 5.31364 5.46390 5.48974 5.61194 5.74545 5.83126 5.86683 5.99129 6.11495 6.23246 6.35792 6.40211 6.52677 6.82395 7.13190 7.35571 8.13074 8.26510 8.35864 8.80442 9.14093 9.55509 10.59852 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.005057 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.652546 B = 5535.186776 C = 5945.330539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.853 5.853 2 C 0.060 3.940 3 Si 0.859 3.141 4 H -0.271 1.271 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.314 4.314 8 H 0.110 0.890 9 N -0.443 5.443 10 C 0.098 3.902 11 C 0.458 3.542 12 O -0.491 6.491 13 O -0.526 6.526 14 C 0.503 3.497 15 O -0.533 6.533 16 C -0.175 4.175 17 H 0.119 0.881 18 C -0.144 4.144 19 C -0.092 4.092 20 H 0.123 0.877 21 C -0.043 4.043 22 C -0.048 4.048 23 C 0.082 3.918 24 F -0.141 7.141 25 C -0.128 4.128 26 C -0.139 4.139 27 C 0.090 3.910 28 F -0.141 7.141 29 H 0.276 0.724 30 H 0.113 0.887 31 H 0.104 0.896 32 H 0.401 0.599 33 H 0.105 0.895 34 H 0.105 0.895 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.238 -3.627 -1.756 14.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.147 4.147 3 Si 0.685 3.315 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.182 1.182 7 C -0.441 4.441 8 H 0.127 0.873 9 N -0.165 5.165 10 C -0.028 4.028 11 C 0.297 3.703 12 O -0.376 6.376 13 O -0.338 6.338 14 C 0.292 3.708 15 O -0.413 6.413 16 C -0.196 4.196 17 H 0.137 0.863 18 C -0.181 4.181 19 C -0.110 4.110 20 H 0.141 0.859 21 C -0.044 4.044 22 C -0.067 4.067 23 C 0.063 3.937 24 F -0.119 7.119 25 C -0.147 4.147 26 C -0.157 4.157 27 C 0.071 3.929 28 F -0.120 7.120 29 H 0.087 0.913 30 H 0.131 0.869 31 H 0.122 0.878 32 H 0.259 0.741 33 H 0.123 0.877 34 H 0.123 0.877 35 H 0.155 0.845 36 H 0.155 0.845 37 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 13.752 -3.947 -0.874 14.334 hybrid contribution 0.023 0.931 -0.712 1.173 sum 13.775 -3.016 -1.586 14.190 Atomic orbital electron populations 1.69760 1.06185 1.28104 1.44800 1.25381 0.95208 0.98153 0.95928 0.87209 0.81771 0.84215 0.78278 1.19772 1.20518 1.18174 1.19040 0.85035 0.97034 1.42952 0.87289 1.43343 1.10355 1.40049 1.22732 1.21607 1.03241 0.94802 0.83197 1.24547 0.73215 0.87526 0.85005 1.90703 1.41744 1.18574 1.86568 1.84576 1.81771 1.49229 1.18237 1.19261 0.84514 0.83328 0.83656 1.90615 1.79384 1.42767 1.28505 1.22531 0.95397 0.96383 1.05301 0.86278 1.23094 1.02767 0.97744 0.94523 1.20874 0.98208 1.01016 0.90921 0.85911 1.18596 0.96561 0.96916 0.92326 1.20639 0.93805 0.92914 0.99305 1.17491 0.88975 0.92844 0.94405 1.91480 1.57660 1.66801 1.95983 1.20797 0.97593 1.00389 0.95959 1.20692 0.98652 0.98048 0.98357 1.17304 0.89328 0.92568 0.93685 1.91446 1.57427 1.67260 1.95881 0.91338 0.86949 0.87799 0.74118 0.87697 0.87684 0.84528 0.84526 0.84471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.15 13.96 55.50 0.77 -23.38 16 2 C 0.06 1.61 5.27 -17.47 -0.09 1.52 16 3 Si 0.86 19.11 25.03 -169.99 -4.25 14.85 16 4 H -0.27 -5.51 6.69 56.52 0.38 -5.13 16 5 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.26 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.31 -8.67 9.36 -14.93 -0.14 -8.81 16 8 H 0.11 3.45 7.91 -52.49 -0.42 3.03 16 9 N -0.44 -10.35 1.73 -116.09 -0.20 -10.55 16 10 C 0.10 1.87 4.38 -5.19 -0.02 1.85 16 11 C 0.46 8.26 8.23 36.01 0.30 8.56 16 12 O -0.49 -10.42 17.05 -18.75 -0.32 -10.74 16 13 O -0.53 -7.18 13.42 -39.25 -0.53 -7.71 16 14 C 0.50 11.12 7.06 -10.98 -0.08 11.05 16 15 O -0.53 -13.18 11.57 5.54 0.06 -13.12 16 16 C -0.17 -2.89 5.20 -91.77 -0.48 -3.36 16 17 H 0.12 1.65 6.53 -51.93 -0.34 1.31 16 18 C -0.14 -2.01 9.58 -26.71 -0.26 -2.26 16 19 C -0.09 -1.36 5.80 -91.75 -0.53 -1.89 16 20 H 0.12 1.52 7.87 -51.93 -0.41 1.11 16 21 C -0.04 -0.72 4.37 -104.56 -0.46 -1.18 16 22 C -0.05 -0.85 6.15 -39.52 -0.24 -1.09 16 23 C 0.08 1.42 7.30 -39.43 -0.29 1.14 16 24 F -0.14 -2.53 17.27 2.25 0.04 -2.49 16 25 C -0.13 -1.89 10.02 -39.52 -0.40 -2.28 16 26 C -0.14 -1.97 10.02 -39.52 -0.40 -2.36 16 27 C 0.09 1.44 7.24 -39.43 -0.29 1.15 16 28 F -0.14 -2.18 16.61 2.25 0.04 -2.14 16 29 H 0.28 7.19 8.31 -40.82 -0.34 6.85 16 30 H 0.11 2.26 3.57 -51.93 -0.19 2.07 16 31 H 0.10 1.58 6.26 -51.93 -0.33 1.25 16 32 H 0.40 3.62 9.10 45.56 0.41 4.04 16 33 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 34 H 0.10 1.62 6.18 -51.93 -0.32 1.30 16 35 H 0.14 2.52 5.78 -52.49 -0.30 2.22 16 36 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 37 H 0.14 1.54 8.06 -52.49 -0.42 1.11 16 LS Contribution 323.28 15.07 4.87 4.87 Total: -1.00 -33.16 323.28 -5.19 -38.35 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -2.31 Total: 10.02 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -3.37 Total: 2.03 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.57 Total: -33.93 kcal Atomic # 8 Polarization: -30.78 SS G_CDS: -0.78 Total: -31.56 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.08 Total: -4.63 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -4.25 Total: 14.85 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.16 -5.19 -38.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.240 kcal (2) G-P(sol) polarization free energy of solvation -33.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.350 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds