Wall clock time and date at job start Tue Mar 31 2020 14:34:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86797 * 120.00135 * 2 1 4 4 H 1.48503 * 109.46970 * 275.73163 * 3 2 1 5 5 H 1.48508 * 109.47307 * 35.72717 * 3 2 1 6 6 H 1.48498 * 109.47082 * 155.72913 * 3 2 1 7 7 C 1.38949 * 119.99776 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99987 * 337.71166 * 7 2 1 9 9 N 1.37095 * 119.99767 * 157.71514 * 7 2 1 10 10 C 1.46505 * 120.00040 * 322.61820 * 9 7 2 11 11 C 1.50707 * 109.47205 * 264.13186 * 10 9 7 12 12 O 1.20830 * 119.99710 * 0.02562 * 11 10 9 13 13 O 1.34226 * 119.99997 * 179.97438 * 11 10 9 14 14 C 1.34776 * 120.00435 * 142.62051 * 9 7 2 15 15 O 1.21297 * 119.99678 * 0.02562 * 14 9 7 16 16 C 1.50702 * 120.00363 * 179.97438 * 14 9 7 17 17 H 1.08996 * 115.55830 * 34.31109 * 16 14 9 18 18 C 1.52995 * 117.49899 * 248.62146 * 16 14 9 19 19 C 1.53002 * 117.49652 * 179.97438 * 16 14 9 20 20 H 1.08996 * 117.51641 * 214.96979 * 19 16 14 21 21 C 1.50697 * 117.50202 * 0.02562 * 19 16 14 22 22 C 1.38213 * 119.99899 * 60.03073 * 21 19 16 23 23 C 1.38427 * 119.99772 * 179.97438 * 22 21 19 24 24 F 1.35097 * 119.99736 * 180.02562 * 23 22 21 25 25 C 1.38473 * 120.00232 * 359.97438 * 23 22 21 26 26 C 1.38162 * 119.99772 * 0.02562 * 25 23 22 27 27 C 1.38424 * 120.00242 * 240.01163 * 21 19 16 28 28 F 1.35107 * 119.99798 * 0.02562 * 27 21 19 29 29 H 0.96999 * 119.99637 * 0.02562 * 1 2 3 30 30 H 1.09004 * 109.47169 * 24.12852 * 10 9 7 31 31 H 1.08993 * 109.47211 * 144.13459 * 10 9 7 32 32 H 0.96699 * 116.99510 * 180.02562 * 13 11 10 33 33 H 1.09005 * 117.50053 * 145.02078 * 18 16 14 34 34 H 1.08999 * 117.52049 * 359.97438 * 18 16 14 35 35 H 1.07998 * 119.99977 * 0.02562 * 22 21 19 36 36 H 1.07997 * 119.99641 * 180.02562 * 25 23 22 37 37 H 1.07999 * 119.99661 * 180.28296 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.3746 2.1163 -1.3931 5 1 1.5114 2.6148 0.8176 6 1 3.6010 1.4082 0.5755 7 6 2.0088 -1.2034 0.0005 8 1 1.5293 -2.1036 0.3557 9 7 3.3030 -1.2479 -0.4497 10 6 3.7089 -0.4288 -1.5945 11 6 3.6421 -1.2557 -2.8527 12 8 3.2910 -2.4106 -2.7987 13 8 3.9717 -0.7089 -4.0334 14 6 4.2019 -2.0452 0.1608 15 8 3.8657 -2.7238 1.1084 16 6 5.6244 -2.0946 -0.3345 17 1 6.0193 -1.1566 -0.7246 18 6 6.0971 -3.3901 -0.9969 19 6 6.5968 -3.0187 0.4012 20 1 7.6316 -2.6892 0.4947 21 6 6.0588 -3.8104 1.5652 22 6 5.0224 -4.7043 1.3729 23 6 4.5286 -5.4319 2.4420 24 9 3.5159 -6.3060 2.2539 25 6 5.0734 -5.2644 3.7040 26 6 6.1094 -4.3708 3.8962 27 6 6.6029 -3.6425 2.8269 28 9 7.6159 -2.7686 3.0149 29 1 -0.4849 0.8401 -0.0004 30 1 3.0387 0.4260 -1.6856 31 1 4.7294 -0.0762 -1.4454 32 1 3.9129 -1.2786 -4.8126 33 1 6.8032 -3.3044 -1.8230 34 1 5.3798 -4.2071 -1.0744 35 1 4.5984 -4.8358 0.3883 36 1 4.6883 -5.8324 4.5380 37 1 6.5373 -4.2436 4.8797 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739077354.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:16 Heat of formation + Delta-G solvation = -151.039860 kcal Electronic energy + Delta-G solvation = -28389.757171 eV Core-core repulsion = 23962.622063 eV Total energy + Delta-G solvation = -4427.135108 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.096 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -49.88845 -49.85745 -41.75350 -40.85952 -39.49622 -37.61405 -36.99758 -36.41348 -34.20975 -31.92499 -30.87674 -29.73602 -27.80627 -25.46527 -24.48406 -23.51432 -23.19125 -21.91263 -20.28213 -19.28409 -19.16722 -18.96779 -18.39239 -18.01665 -17.96002 -17.50331 -16.97439 -16.78608 -16.54016 -16.29715 -15.88552 -15.70152 -15.42975 -15.28090 -14.99634 -14.66974 -14.50402 -14.14707 -14.09197 -13.95097 -13.58738 -13.51960 -13.06603 -12.86478 -12.63494 -12.54643 -12.35089 -12.00949 -11.95782 -11.71948 -11.66796 -11.44948 -11.08266 -10.59113 -9.91201 -9.44639 -9.35717 -8.54649 -6.19678 0.01923 0.17509 1.15525 1.21023 1.33756 1.45529 1.62329 2.02316 2.15377 2.40520 2.59316 2.83321 3.07611 3.26356 3.28498 3.44649 3.61772 3.70765 3.84832 3.88574 3.97128 4.07079 4.13603 4.25246 4.33910 4.51096 4.68003 4.77015 4.81452 4.97432 5.04303 5.12148 5.13797 5.31467 5.45437 5.65341 5.89898 6.01422 6.44099 6.87470 7.04369 7.20482 7.77482 8.62965 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.013022 B = 0.005057 C = 0.004708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.652546 B = 5535.186776 C = 5945.330539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.008 3.992 3 Si 0.934 3.066 4 H -0.230 1.230 5 H -0.285 1.285 6 H -0.242 1.242 7 C -0.330 4.330 8 H 0.037 0.963 9 N -0.459 5.459 10 C 0.090 3.910 11 C 0.469 3.531 12 O -0.534 6.534 13 O -0.505 6.505 14 C 0.493 3.507 15 O -0.573 6.573 16 C -0.187 4.187 17 H 0.159 0.841 18 C -0.127 4.127 19 C -0.087 4.087 20 H 0.158 0.842 21 C -0.058 4.058 22 C -0.067 4.067 23 C 0.052 3.948 24 F -0.154 7.154 25 C -0.124 4.124 26 C -0.131 4.131 27 C 0.084 3.916 28 F -0.135 7.135 29 H 0.281 0.719 30 H 0.107 0.893 31 H 0.155 0.845 32 H 0.425 0.575 33 H 0.149 0.851 34 H 0.079 0.921 35 H 0.115 0.885 36 H 0.166 0.834 37 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.243 -1.287 -2.556 18.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.194 4.194 3 Si 0.755 3.245 4 H -0.154 1.154 5 H -0.211 1.211 6 H -0.165 1.165 7 C -0.457 4.457 8 H 0.055 0.945 9 N -0.181 5.181 10 C -0.035 4.035 11 C 0.310 3.690 12 O -0.423 6.423 13 O -0.318 6.318 14 C 0.284 3.716 15 O -0.455 6.455 16 C -0.208 4.208 17 H 0.176 0.824 18 C -0.164 4.164 19 C -0.105 4.105 20 H 0.175 0.825 21 C -0.059 4.059 22 C -0.086 4.086 23 C 0.033 3.967 24 F -0.133 7.133 25 C -0.143 4.143 26 C -0.149 4.149 27 C 0.064 3.936 28 F -0.114 7.114 29 H 0.091 0.909 30 H 0.125 0.875 31 H 0.172 0.828 32 H 0.287 0.713 33 H 0.167 0.833 34 H 0.097 0.903 35 H 0.133 0.867 36 H 0.183 0.817 37 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges 17.789 -1.606 -1.735 17.945 hybrid contribution -1.252 0.060 -0.477 1.342 sum 16.536 -1.546 -2.212 16.755 Atomic orbital electron populations 1.69898 1.08417 1.29562 1.46741 1.26254 0.95939 1.02356 0.94888 0.86037 0.80309 0.77667 0.80463 1.15427 1.21098 1.16495 1.18504 0.87338 0.95239 1.44667 0.94485 1.43345 1.08835 1.41293 1.24637 1.21768 1.05653 0.93794 0.82305 1.24167 0.72304 0.86530 0.85965 1.90717 1.43799 1.20440 1.87305 1.84483 1.80570 1.48958 1.17809 1.20327 0.86693 0.81580 0.82985 1.90600 1.80760 1.43897 1.30280 1.22522 0.91720 0.99173 1.07339 0.82408 1.23200 1.02325 0.95177 0.95663 1.21121 0.99045 0.99831 0.90471 0.82466 1.18864 0.96319 0.96862 0.93855 1.20596 0.94947 0.94339 0.98683 1.17929 0.89474 0.93512 0.95827 1.91434 1.58399 1.67306 1.96174 1.21130 0.97258 1.00394 0.95487 1.21121 0.97677 0.96550 0.99569 1.17469 0.89475 0.92798 0.93814 1.91457 1.57066 1.67040 1.95821 0.90910 0.87513 0.82804 0.71294 0.83303 0.90270 0.86702 0.81654 0.80853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.09 13.96 21.66 0.30 -53.79 16 2 C 0.01 0.43 5.27 84.93 0.45 0.88 16 3 Si 0.93 38.73 25.03 68.60 1.72 40.45 16 4 H -0.23 -8.02 6.69 99.48 0.67 -7.35 16 5 H -0.28 -11.96 7.11 99.48 0.71 -11.26 16 6 H -0.24 -9.34 7.11 99.48 0.71 -8.63 16 7 C -0.33 -19.32 9.36 84.04 0.79 -18.53 16 8 H 0.04 2.62 7.91 -2.91 -0.02 2.60 16 9 N -0.46 -21.64 1.73 -639.57 -1.11 -22.75 16 10 C 0.09 3.19 4.38 85.63 0.37 3.57 16 11 C 0.47 15.89 8.23 71.24 0.59 16.48 16 12 O -0.53 -22.67 17.05 21.95 0.37 -22.29 16 13 O -0.50 -11.71 13.42 -51.38 -0.69 -12.40 16 14 C 0.49 22.03 7.06 87.66 0.62 22.65 16 15 O -0.57 -29.91 11.57 -3.08 -0.04 -29.94 16 16 C -0.19 -5.68 5.20 -11.54 -0.06 -5.74 16 17 H 0.16 3.49 6.53 -2.39 -0.02 3.48 16 18 C -0.13 -3.24 9.58 30.61 0.29 -2.94 16 19 C -0.09 -2.33 5.80 -11.52 -0.07 -2.40 16 20 H 0.16 3.15 7.87 -2.39 -0.02 3.13 16 21 C -0.06 -1.91 4.37 -19.83 -0.09 -2.00 16 22 C -0.07 -2.50 6.15 22.31 0.14 -2.36 16 23 C 0.05 1.88 7.30 22.37 0.16 2.05 16 24 F -0.15 -5.99 17.27 44.97 0.78 -5.21 16 25 C -0.12 -3.58 10.02 22.31 0.22 -3.35 16 26 C -0.13 -3.45 10.02 22.31 0.22 -3.23 16 27 C 0.08 2.52 7.24 22.37 0.16 2.68 16 28 F -0.14 -3.75 16.61 44.97 0.75 -3.00 16 29 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 30 H 0.11 3.93 3.57 -2.38 -0.01 3.93 16 31 H 0.15 3.84 6.26 -2.39 -0.01 3.83 16 32 H 0.43 6.01 9.10 -74.06 -0.67 5.33 16 33 H 0.15 2.50 8.14 -2.38 -0.02 2.48 16 34 H 0.08 2.48 6.18 -2.39 -0.01 2.47 16 35 H 0.12 4.68 5.78 -2.91 -0.02 4.66 16 36 H 0.17 3.68 8.06 -2.91 -0.02 3.65 16 37 H 0.17 3.25 8.06 -2.91 -0.02 3.22 16 Total: -1.00 -81.55 323.28 6.35 -75.20 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.46 Total: 25.98 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 3.80 Total: 7.75 kcal Atomic # 7 Polarization: -75.73 SS G_CDS: -0.80 Total: -76.54 kcal Atomic # 8 Polarization: -64.29 SS G_CDS: -0.35 Total: -64.64 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 1.52 Total: -8.21 kcal Atomic # 14 Polarization: 38.73 SS G_CDS: 1.72 Total: 40.45 kcal Total: -81.55 6.35 -75.20 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739077354.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.839 kcal (2) G-P(sol) polarization free energy of solvation -81.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds