Wall clock time and date at job start Tue Mar 31 2020 14:35:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48498 * 109.47075 * 240.00134 * 3 2 1 5 5 H 1.48504 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47021 * 120.00045 * 3 2 1 7 7 C 1.38948 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99511 * 201.06726 * 7 2 1 9 9 N 1.37092 * 120.00137 * 21.07093 * 7 2 1 10 10 C 1.46494 * 120.00192 * 16.35607 * 9 7 2 11 11 C 1.50698 * 109.47427 * 264.05663 * 10 9 7 12 12 O 1.20830 * 120.00136 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00260 * 179.97438 * 11 10 9 14 14 C 1.34773 * 119.99983 * 196.36010 * 9 7 2 15 15 O 1.21302 * 120.00311 * 359.97438 * 14 9 7 16 16 C 1.50698 * 120.00230 * 180.02562 * 14 9 7 17 17 H 1.08997 * 115.55369 * 34.32315 * 16 14 9 18 18 C 1.53002 * 117.51820 * 248.62993 * 16 14 9 19 19 C 1.53004 * 60.00144 * 252.51642 * 18 16 14 20 20 H 1.08999 * 117.52126 * 107.47487 * 19 18 16 21 21 C 1.50698 * 117.49923 * 252.51398 * 19 18 16 22 22 C 1.38266 * 120.00169 * 8.86958 * 21 19 18 23 23 C 1.38207 * 120.06855 * 180.26105 * 22 21 19 24 24 C 1.38254 * 120.07630 * 359.48602 * 23 22 21 25 25 C 1.38370 * 119.99792 * 0.26046 * 24 23 22 26 26 F 1.35099 * 120.03847 * 180.02562 * 25 24 23 27 27 C 1.38366 * 120.00320 * 188.62112 * 21 19 18 28 28 F 1.35099 * 120.03334 * 359.97096 * 27 21 19 29 29 H 0.97003 * 120.00350 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47135 * 24.05759 * 10 9 7 31 31 H 1.09005 * 109.47674 * 144.05601 * 10 9 7 32 32 H 0.96697 * 116.99880 * 180.02562 * 13 11 10 33 33 H 1.09000 * 117.50462 * 145.03127 * 18 16 14 34 34 H 1.09001 * 117.49783 * 359.97438 * 18 16 14 35 35 H 1.07995 * 119.95911 * 0.02562 * 22 21 19 36 36 H 1.08004 * 119.96256 * 179.76897 * 23 22 21 37 37 H 1.07997 * 120.00412 * 180.23572 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0347 -1.2347 0.3357 9 7 1.3921 -2.3507 -0.4279 10 6 0.1548 -2.2703 -1.2081 11 6 -1.0295 -2.4282 -0.2897 12 8 -0.8577 -2.5907 0.8952 13 8 -2.2753 -2.3873 -0.7878 14 6 1.9240 -3.5527 -0.1301 15 8 2.9487 -3.6194 0.5156 16 6 1.2465 -4.8140 -0.6004 17 1 0.7507 -4.7483 -1.5688 18 6 0.6065 -5.7106 0.4614 19 6 1.8997 -6.1471 -0.2301 20 1 2.8196 -6.1118 0.3536 21 6 1.8085 -7.2687 -1.2324 22 6 0.5715 -7.7385 -1.6336 23 6 0.4863 -8.7707 -2.5486 24 6 1.6375 -9.3287 -3.0729 25 6 2.8769 -8.8574 -2.6774 26 9 4.0023 -9.4017 -3.1895 27 6 2.9625 -7.8251 -1.7551 28 9 4.1715 -7.3629 -1.3678 29 1 -0.4851 0.8400 0.0004 30 1 0.1017 -1.3023 -1.7063 31 1 0.1438 -3.0643 -1.9549 32 1 -3.0028 -2.4929 -0.1597 33 1 -0.3102 -6.2349 0.1915 34 1 0.6758 -5.3885 1.5004 35 1 -0.3289 -7.3009 -1.2285 36 1 -0.4808 -9.1389 -2.8580 37 1 1.5695 -10.1327 -3.7907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:57 Heat of formation + Delta-G solvation = -145.212278 kcal Electronic energy + Delta-G solvation = -27578.753923 eV Core-core repulsion = 23151.871518 eV Total energy + Delta-G solvation = -4426.882405 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.096 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.46930 -48.52707 -39.93264 -39.22602 -38.27307 -36.19793 -35.14785 -34.44917 -31.80960 -30.77455 -30.37301 -27.77932 -25.71576 -24.35862 -23.17844 -22.58549 -21.16487 -20.72331 -18.71756 -18.06159 -17.39199 -17.20298 -17.01039 -16.87744 -16.34725 -16.28739 -15.66181 -15.19219 -15.00261 -14.90288 -14.51898 -14.39868 -14.36722 -14.08089 -13.47645 -13.21580 -12.93604 -12.51847 -12.45039 -12.07867 -11.98231 -11.75006 -11.57039 -11.48362 -11.16521 -10.99827 -10.62162 -10.51124 -10.43783 -10.36696 -10.12445 -9.67256 -9.08545 -8.90629 -8.79167 -8.55059 -7.97088 -6.50581 -3.94231 0.79091 0.81403 3.07064 3.16176 3.21308 3.25532 3.37451 3.53412 3.63902 3.90120 4.12945 4.26566 4.32719 4.36185 4.57633 4.64837 4.83888 4.87257 4.97690 5.09758 5.21727 5.37340 5.52781 5.64651 5.67589 5.81130 5.86220 5.88995 5.97480 6.06669 6.30487 6.41543 6.46076 6.54627 6.61880 7.44554 7.49865 7.92493 8.31222 8.98978 9.03087 9.24949 9.78681 10.58113 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.003660 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.362132 B = 7649.068020 C = 8607.703683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.030 3.970 3 Si 0.931 3.069 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.305 4.305 8 H 0.108 0.892 9 N -0.425 5.425 10 C 0.146 3.854 11 C 0.490 3.510 12 O -0.501 6.501 13 O -0.535 6.535 14 C 0.487 3.513 15 O -0.572 6.572 16 C -0.154 4.154 17 H 0.114 0.886 18 C -0.135 4.135 19 C -0.105 4.105 20 H 0.131 0.869 21 C -0.046 4.046 22 C -0.105 4.105 23 C -0.097 4.097 24 C -0.137 4.137 25 C 0.067 3.933 26 F -0.131 7.131 27 C 0.075 3.925 28 F -0.121 7.121 29 H 0.272 0.728 30 H 0.129 0.871 31 H 0.077 0.923 32 H 0.391 0.609 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.394 -14.304 -7.688 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.172 4.172 3 Si 0.757 3.243 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.432 4.432 8 H 0.126 0.874 9 N -0.144 5.144 10 C 0.019 3.981 11 C 0.330 3.670 12 O -0.386 6.386 13 O -0.346 6.346 14 C 0.275 3.725 15 O -0.455 6.455 16 C -0.176 4.176 17 H 0.132 0.868 18 C -0.173 4.173 19 C -0.123 4.123 20 H 0.149 0.851 21 C -0.047 4.047 22 C -0.123 4.123 23 C -0.115 4.115 24 C -0.155 4.155 25 C 0.046 3.954 26 F -0.109 7.109 27 C 0.055 3.945 28 F -0.100 7.100 29 H 0.082 0.918 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.248 0.752 33 H 0.119 0.881 34 H 0.126 0.874 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.526 -14.147 -7.301 16.551 hybrid contribution 0.057 0.915 0.413 1.006 sum -4.469 -13.231 -6.888 15.572 Atomic orbital electron populations 1.69785 1.06043 1.28084 1.48229 1.25235 0.95338 0.99995 0.96676 0.85916 0.78984 0.80156 0.79230 1.19765 1.20964 1.19772 1.19700 0.97641 0.83211 1.42689 0.87414 1.43327 1.19540 1.05138 1.46358 1.20691 0.81439 1.04681 0.91287 1.23771 0.83063 0.70914 0.89212 1.90608 1.85552 1.44786 1.17624 1.84524 1.17413 1.86433 1.46268 1.19022 0.86966 0.83180 0.83322 1.90542 1.25929 1.86187 1.42862 1.22415 1.03724 0.90764 1.00654 0.86817 1.23034 0.94816 1.00665 0.98741 1.20944 0.99988 0.91639 0.99763 0.85109 1.19240 0.91429 0.96747 0.97286 1.21107 0.97090 0.96750 0.97375 1.21030 0.98276 0.95876 0.96359 1.21036 0.90152 1.02096 1.02258 1.17675 0.83613 0.96100 0.97962 1.91520 1.49569 1.84434 1.85424 1.17501 0.81668 0.96581 0.98750 1.91558 1.41386 1.87540 1.89484 0.91771 0.85356 0.90553 0.75217 0.88133 0.87400 0.84023 0.84224 0.83915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.62 9.26 55.50 0.51 -22.11 16 2 C 0.03 0.77 4.89 -17.47 -0.09 0.69 16 3 Si 0.93 20.28 29.60 -169.99 -5.03 15.25 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 7 C -0.31 -8.30 9.35 -14.94 -0.14 -8.44 16 8 H 0.11 3.09 7.37 -52.49 -0.39 2.70 16 9 N -0.43 -10.53 2.18 -116.10 -0.25 -10.78 16 10 C 0.15 3.06 4.97 -5.20 -0.03 3.03 16 11 C 0.49 10.34 6.39 36.00 0.23 10.57 16 12 O -0.50 -12.40 16.81 -18.75 -0.32 -12.72 16 13 O -0.54 -9.04 13.42 -39.26 -0.53 -9.57 16 14 C 0.49 11.72 7.20 -10.99 -0.08 11.64 16 15 O -0.57 -15.83 15.90 5.54 0.09 -15.74 16 16 C -0.15 -2.79 4.82 -91.77 -0.44 -3.23 16 17 H 0.11 1.77 6.53 -51.93 -0.34 1.43 16 18 C -0.14 -2.10 9.56 -26.73 -0.26 -2.36 16 19 C -0.10 -1.71 5.31 -91.77 -0.49 -2.19 16 20 H 0.13 2.45 7.39 -51.93 -0.38 2.06 16 21 C -0.05 -0.62 5.62 -104.57 -0.59 -1.21 16 22 C -0.11 -1.08 9.29 -39.58 -0.37 -1.45 16 23 C -0.10 -0.80 10.04 -39.59 -0.40 -1.20 16 24 C -0.14 -1.26 10.02 -39.53 -0.40 -1.66 16 25 C 0.07 0.83 7.31 -39.36 -0.29 0.54 16 26 F -0.13 -1.73 17.18 2.25 0.04 -1.69 16 27 C 0.08 1.09 7.25 -39.37 -0.29 0.80 16 28 F -0.12 -2.04 16.53 2.25 0.04 -2.00 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.13 2.82 6.34 -51.93 -0.33 2.49 16 31 H 0.08 1.29 6.27 -51.93 -0.33 0.97 16 32 H 0.39 5.00 9.10 45.56 0.41 5.41 16 33 H 0.10 1.20 6.18 -51.93 -0.32 0.88 16 34 H 0.11 1.90 8.14 -51.93 -0.42 1.48 16 35 H 0.14 1.21 6.03 -52.49 -0.32 0.90 16 36 H 0.14 0.71 8.06 -52.48 -0.42 0.29 16 37 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 LS Contribution 331.98 15.07 5.00 5.00 Total: -1.00 -33.64 331.98 -6.44 -40.08 By element: Atomic # 1 Polarization: 11.13 SS G_CDS: -2.39 Total: 8.74 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -3.61 Total: 5.53 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.26 Total: -32.89 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.75 Total: -38.03 kcal Atomic # 9 Polarization: -3.77 SS G_CDS: 0.08 Total: -3.70 kcal Atomic # 14 Polarization: 20.28 SS G_CDS: -5.03 Total: 15.25 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -33.64 -6.44 -40.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.128 kcal (2) G-P(sol) polarization free energy of solvation -33.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.769 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds