Wall clock time and date at job start Tue Mar 31 2020 14:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31410 * 1 3 3 Si 1.86799 * 119.99828 * 2 1 4 4 H 1.48498 * 109.47075 * 240.00134 * 3 2 1 5 5 H 1.48504 * 109.47149 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.47021 * 120.00045 * 3 2 1 7 7 C 1.38948 * 119.99840 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99511 * 201.06726 * 7 2 1 9 9 N 1.37092 * 120.00137 * 21.07093 * 7 2 1 10 10 C 1.46494 * 120.00192 * 16.35607 * 9 7 2 11 11 C 1.50698 * 109.47427 * 264.05663 * 10 9 7 12 12 O 1.20830 * 120.00136 * 0.02562 * 11 10 9 13 13 O 1.34230 * 120.00260 * 179.97438 * 11 10 9 14 14 C 1.34773 * 119.99983 * 196.36010 * 9 7 2 15 15 O 1.21302 * 120.00311 * 359.97438 * 14 9 7 16 16 C 1.50698 * 120.00230 * 180.02562 * 14 9 7 17 17 H 1.08997 * 115.55369 * 34.32315 * 16 14 9 18 18 C 1.53002 * 117.51820 * 248.62993 * 16 14 9 19 19 C 1.53004 * 60.00144 * 252.51642 * 18 16 14 20 20 H 1.08999 * 117.52126 * 107.47487 * 19 18 16 21 21 C 1.50698 * 117.49923 * 252.51398 * 19 18 16 22 22 C 1.38266 * 120.00169 * 8.86958 * 21 19 18 23 23 C 1.38207 * 120.06855 * 180.26105 * 22 21 19 24 24 C 1.38254 * 120.07630 * 359.48602 * 23 22 21 25 25 C 1.38370 * 119.99792 * 0.26046 * 24 23 22 26 26 F 1.35099 * 120.03847 * 180.02562 * 25 24 23 27 27 C 1.38366 * 120.00320 * 188.62112 * 21 19 18 28 28 F 1.35099 * 120.03334 * 359.97096 * 27 21 19 29 29 H 0.97003 * 120.00350 * 359.97438 * 1 2 3 30 30 H 1.09000 * 109.47135 * 24.05759 * 10 9 7 31 31 H 1.09005 * 109.47674 * 144.05601 * 10 9 7 32 32 H 0.96697 * 116.99880 * 180.02562 * 13 11 10 33 33 H 1.09000 * 117.50462 * 145.03127 * 18 16 14 34 34 H 1.09001 * 117.49783 * 359.97438 * 18 16 14 35 35 H 1.07995 * 119.95911 * 0.02562 * 22 21 19 36 36 H 1.08004 * 119.96256 * 179.76897 * 23 22 21 37 37 H 1.07997 * 120.00412 * 180.23572 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2830 2.7465 0.0006 6 1 3.1018 1.6964 1.2126 7 6 2.0088 -1.2033 -0.0005 8 1 3.0347 -1.2347 0.3357 9 7 1.3921 -2.3507 -0.4279 10 6 0.1548 -2.2703 -1.2081 11 6 -1.0295 -2.4282 -0.2897 12 8 -0.8577 -2.5907 0.8952 13 8 -2.2753 -2.3873 -0.7878 14 6 1.9240 -3.5527 -0.1301 15 8 2.9487 -3.6194 0.5156 16 6 1.2465 -4.8140 -0.6004 17 1 0.7507 -4.7483 -1.5688 18 6 0.6065 -5.7106 0.4614 19 6 1.8997 -6.1471 -0.2301 20 1 2.8196 -6.1118 0.3536 21 6 1.8085 -7.2687 -1.2324 22 6 0.5715 -7.7385 -1.6336 23 6 0.4863 -8.7707 -2.5486 24 6 1.6375 -9.3287 -3.0729 25 6 2.8769 -8.8574 -2.6774 26 9 4.0023 -9.4017 -3.1895 27 6 2.9625 -7.8251 -1.7551 28 9 4.1715 -7.3629 -1.3678 29 1 -0.4851 0.8400 0.0004 30 1 0.1017 -1.3023 -1.7063 31 1 0.1438 -3.0643 -1.9549 32 1 -3.0028 -2.4929 -0.1597 33 1 -0.3102 -6.2349 0.1915 34 1 0.6758 -5.3885 1.5004 35 1 -0.3289 -7.3009 -1.2285 36 1 -0.4808 -9.1389 -2.8580 37 1 1.5695 -10.1327 -3.7907 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739078197.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:56 Heat of formation + Delta-G solvation = -166.866050 kcal Electronic energy + Delta-G solvation = -27579.692901 eV Core-core repulsion = 23151.871518 eV Total energy + Delta-G solvation = -4427.821383 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.096 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -50.50121 -49.59250 -41.43442 -40.54289 -39.74455 -37.59194 -36.78366 -36.25119 -33.75532 -31.71856 -31.23247 -29.53665 -27.49579 -25.42943 -24.62267 -23.61280 -22.77038 -21.85396 -20.36529 -19.15998 -18.99297 -18.69532 -18.44890 -18.01155 -17.65342 -17.37434 -17.28093 -16.72642 -16.24842 -16.09706 -16.02122 -15.89937 -15.49190 -15.37230 -15.05558 -14.90263 -14.02405 -13.70249 -13.63792 -13.54927 -13.39092 -13.31785 -13.16034 -12.70608 -12.61131 -12.41537 -12.21076 -12.17400 -12.06509 -11.75391 -11.52181 -11.45714 -10.93929 -10.52343 -9.90668 -9.74994 -9.71342 -8.46980 -5.98259 -0.06002 -0.04630 1.34208 1.41192 1.51397 1.67538 1.85754 2.17294 2.34723 2.54523 2.69467 2.83728 2.96718 3.16788 3.31556 3.47197 3.65728 3.76229 3.86128 3.94516 4.04002 4.08405 4.23749 4.37840 4.64737 4.74769 4.82176 4.85555 4.96134 4.97809 5.01640 5.05072 5.24504 5.36304 5.42334 5.79515 5.97875 6.02224 6.36711 7.07346 7.28640 7.51180 7.90549 8.59279 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.003660 C = 0.003252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.362132 B = 7649.068020 C = 8607.703683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.005 3.995 3 Si 0.990 3.010 4 H -0.264 1.264 5 H -0.269 1.269 6 H -0.284 1.284 7 C -0.346 4.346 8 H 0.074 0.926 9 N -0.437 5.437 10 C 0.141 3.859 11 C 0.501 3.499 12 O -0.544 6.544 13 O -0.517 6.517 14 C 0.470 3.530 15 O -0.629 6.629 16 C -0.166 4.166 17 H 0.147 0.853 18 C -0.114 4.114 19 C -0.097 4.097 20 H 0.089 0.911 21 C -0.061 4.061 22 C -0.095 4.095 23 C -0.075 4.075 24 C -0.119 4.119 25 C 0.050 3.950 26 F -0.142 7.142 27 C 0.036 3.964 28 F -0.151 7.151 29 H 0.277 0.723 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.414 0.586 33 H 0.151 0.849 34 H 0.079 0.921 35 H 0.169 0.831 36 H 0.189 0.811 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.152 -15.784 -10.017 20.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.197 4.197 3 Si 0.814 3.186 4 H -0.188 1.188 5 H -0.193 1.193 6 H -0.210 1.210 7 C -0.474 4.474 8 H 0.092 0.908 9 N -0.154 5.154 10 C 0.015 3.985 11 C 0.343 3.657 12 O -0.433 6.433 13 O -0.329 6.329 14 C 0.261 3.739 15 O -0.516 6.516 16 C -0.187 4.187 17 H 0.165 0.835 18 C -0.151 4.151 19 C -0.116 4.116 20 H 0.107 0.893 21 C -0.062 4.062 22 C -0.113 4.113 23 C -0.092 4.092 24 C -0.138 4.138 25 C 0.030 3.970 26 F -0.121 7.121 27 C 0.016 3.984 28 F -0.130 7.130 29 H 0.087 0.913 30 H 0.136 0.864 31 H 0.139 0.861 32 H 0.274 0.726 33 H 0.169 0.831 34 H 0.097 0.903 35 H 0.186 0.814 36 H 0.206 0.794 37 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges -8.354 -15.627 -9.669 20.186 hybrid contribution 1.131 1.323 1.121 2.070 sum -7.223 -14.304 -8.548 18.161 Atomic orbital electron populations 1.69853 1.06606 1.28925 1.47237 1.25904 0.96195 1.02106 0.95518 0.85052 0.78000 0.76729 0.78848 1.18848 1.19304 1.20985 1.19564 0.97118 0.85390 1.45292 0.90816 1.43476 1.20740 1.04750 1.46454 1.20862 0.80199 1.05827 0.91581 1.23587 0.84105 0.69768 0.88258 1.90607 1.86389 1.46934 1.19345 1.84442 1.16622 1.85512 1.46363 1.20064 0.86426 0.84901 0.82493 1.90491 1.28417 1.87287 1.45419 1.22321 1.05171 0.88517 1.02701 0.83523 1.23143 0.96388 0.98955 0.96590 1.20701 0.98800 0.91903 1.00223 0.89261 1.19101 0.92751 0.96649 0.97699 1.21443 0.96081 0.96748 0.97033 1.21570 0.99810 0.93820 0.94023 1.21523 0.88767 1.01888 1.01600 1.17996 0.84644 0.96179 0.98211 1.91486 1.50557 1.84529 1.85549 1.17990 0.81097 0.98479 1.00791 1.91472 1.43217 1.88196 1.90097 0.91344 0.86386 0.86109 0.72643 0.83091 0.90275 0.81418 0.79381 0.80548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -45.27 9.26 21.66 0.20 -45.07 16 2 C 0.00 0.26 4.89 84.93 0.42 0.67 16 3 Si 0.99 42.12 29.60 68.60 2.03 44.15 16 4 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 5 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.35 -19.73 9.35 84.04 0.79 -18.95 16 8 H 0.07 4.58 7.37 -2.91 -0.02 4.56 16 9 N -0.44 -22.30 2.18 -639.61 -1.39 -23.69 16 10 C 0.14 5.78 4.97 85.63 0.43 6.20 16 11 C 0.50 20.28 6.39 71.24 0.45 20.73 16 12 O -0.54 -26.75 16.81 21.95 0.37 -26.38 16 13 O -0.52 -15.70 13.42 -51.42 -0.69 -16.39 16 14 C 0.47 23.79 7.20 87.66 0.63 24.42 16 15 O -0.63 -37.78 15.90 -3.10 -0.05 -37.83 16 16 C -0.17 -5.99 4.82 -11.54 -0.06 -6.04 16 17 H 0.15 4.18 6.53 -2.39 -0.02 4.16 16 18 C -0.11 -3.42 9.56 30.60 0.29 -3.13 16 19 C -0.10 -3.25 5.31 -11.54 -0.06 -3.31 16 20 H 0.09 3.70 7.39 -2.39 -0.02 3.69 16 21 C -0.06 -1.58 5.62 -19.83 -0.11 -1.69 16 22 C -0.10 -1.51 9.29 22.27 0.21 -1.30 16 23 C -0.07 -0.78 10.04 22.27 0.22 -0.55 16 24 C -0.12 -1.67 10.02 22.30 0.22 -1.45 16 25 C 0.05 1.17 7.31 22.41 0.16 1.34 16 26 F -0.14 -3.75 17.18 44.97 0.77 -2.98 16 27 C 0.04 1.07 7.25 22.41 0.16 1.23 16 28 F -0.15 -5.56 16.53 44.97 0.74 -4.81 16 29 H 0.28 13.32 8.31 -92.71 -0.77 12.55 16 30 H 0.12 5.10 6.34 -2.39 -0.02 5.08 16 31 H 0.12 3.77 6.27 -2.38 -0.01 3.75 16 32 H 0.41 9.03 9.10 -74.06 -0.67 8.36 16 33 H 0.15 2.93 6.18 -2.39 -0.01 2.91 16 34 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.17 1.76 6.03 -2.91 -0.02 1.75 16 36 H 0.19 0.30 8.06 -2.91 -0.02 0.28 16 37 H 0.18 1.30 8.06 -2.91 -0.02 1.28 16 Total: -1.00 -81.79 331.98 6.23 -75.56 By element: Atomic # 1 Polarization: 18.80 SS G_CDS: 0.49 Total: 19.29 kcal Atomic # 6 Polarization: 14.40 SS G_CDS: 3.76 Total: 18.16 kcal Atomic # 7 Polarization: -67.57 SS G_CDS: -1.19 Total: -68.76 kcal Atomic # 8 Polarization: -80.23 SS G_CDS: -0.37 Total: -80.60 kcal Atomic # 9 Polarization: -9.31 SS G_CDS: 1.52 Total: -7.79 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.15 kcal Total: -81.79 6.23 -75.56 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078197.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.308 kcal (2) G-P(sol) polarization free energy of solvation -81.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds