Wall clock time and date at job start Tue Mar 31 2020 14:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86795 * 120.00089 * 2 1 4 4 H 1.48499 * 109.47337 * 179.97438 * 3 2 1 5 5 H 1.48503 * 109.47097 * 299.99922 * 3 2 1 6 6 H 1.48507 * 109.47154 * 59.99755 * 3 2 1 7 7 C 1.38951 * 119.99941 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00043 * 201.65885 * 7 2 1 9 9 N 1.37097 * 119.99945 * 21.66337 * 7 2 1 10 10 C 1.46503 * 120.00163 * 16.49605 * 9 7 2 11 11 C 1.50703 * 109.47024 * 264.07597 * 10 9 7 12 12 O 1.20828 * 119.99871 * 0.02562 * 11 10 9 13 13 O 1.34228 * 119.99860 * 179.97438 * 11 10 9 14 14 C 1.34785 * 120.00142 * 196.49826 * 9 7 2 15 15 O 1.21288 * 119.99291 * 359.97438 * 14 9 7 16 16 C 1.50698 * 120.00040 * 179.97438 * 14 9 7 17 17 H 1.09003 * 115.56252 * 325.69124 * 16 14 9 18 18 C 1.53001 * 117.49510 * 111.37486 * 16 14 9 19 19 C 1.53001 * 117.49806 * 179.97438 * 16 14 9 20 20 H 1.09000 * 117.51404 * 359.97438 * 19 16 14 21 21 C 1.50693 * 117.49797 * 145.02082 * 19 16 14 22 22 C 1.38256 * 120.00199 * 59.99071 * 21 19 16 23 23 C 1.38219 * 120.07287 * 179.97438 * 22 21 19 24 24 C 1.38258 * 120.07004 * 0.03123 * 23 22 21 25 25 C 1.38372 * 119.99647 * 359.97438 * 24 23 22 26 26 F 1.35101 * 120.03150 * 180.02562 * 25 24 23 27 27 C 1.38374 * 119.99947 * 240.01519 * 21 19 16 28 28 F 1.35096 * 120.03670 * 359.70355 * 27 21 19 29 29 H 0.96996 * 119.99844 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.46864 * 24.07201 * 10 9 7 31 31 H 1.08993 * 109.47236 * 144.07728 * 10 9 7 32 32 H 0.96704 * 116.99921 * 179.97438 * 13 11 10 33 33 H 1.09000 * 117.50053 * 0.02562 * 18 16 14 34 34 H 1.09002 * 117.51516 * 214.96773 * 18 16 14 35 35 H 1.08004 * 119.96211 * 0.02746 * 22 21 19 36 36 H 1.07999 * 119.95936 * 179.97438 * 23 22 21 37 37 H 1.07994 * 119.99940 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7082 1.3464 0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8894 2.3965 1.2125 7 6 2.0089 -1.2034 0.0005 8 1 3.0317 -1.2362 0.3457 9 7 1.3960 -2.3489 -0.4372 10 6 0.1674 -2.2650 -1.2308 11 6 -1.0270 -2.4244 -0.3258 12 8 -0.8683 -2.5906 0.8604 13 8 -2.2672 -2.3808 -0.8374 14 6 1.9238 -3.5524 -0.1375 15 8 2.9412 -3.6217 0.5191 16 6 1.2498 -4.8116 -0.6183 17 1 0.1612 -4.7753 -0.6615 18 6 1.9721 -5.6360 -1.6857 19 6 1.8982 -6.1463 -0.2457 20 1 2.8126 -6.1140 0.3468 21 6 0.9830 -7.3104 0.0341 22 6 0.1183 -7.7611 -0.9461 23 6 -0.7214 -8.8290 -0.6913 24 6 -0.6988 -9.4484 0.5446 25 6 0.1653 -8.9997 1.5277 26 9 0.1883 -9.6048 2.7354 27 6 1.0077 -7.9279 1.2721 28 9 1.8562 -7.4917 2.2286 29 1 -0.4850 0.8400 0.0004 30 1 0.1207 -1.2954 -1.7267 31 1 0.1639 -3.0568 -1.9799 32 1 -3.0018 -2.4883 -0.2177 33 1 2.9349 -5.2679 -2.0400 34 1 1.3589 -6.1425 -2.4312 35 1 0.0996 -7.2787 -1.9122 36 1 -1.3964 -9.1793 -1.4581 37 1 -1.3557 -10.2824 0.7426 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739078201.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:59 Heat of formation + Delta-G solvation = -146.645866 kcal Electronic energy + Delta-G solvation = -27691.782417 eV Core-core repulsion = 23264.837847 eV Total energy + Delta-G solvation = -4426.944570 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 325.096 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.43432 -48.49162 -39.94830 -39.23100 -38.27740 -36.21640 -35.15716 -34.45805 -31.80683 -30.76544 -30.35595 -27.77705 -25.71508 -24.36303 -23.18197 -22.58831 -21.12737 -20.75947 -18.73831 -18.04196 -17.39153 -17.19580 -16.98567 -16.87826 -16.34130 -16.27029 -15.65174 -15.18940 -14.99903 -14.87187 -14.55289 -14.37930 -14.36112 -14.09304 -13.48718 -13.19280 -12.93186 -12.54071 -12.43213 -12.13849 -11.85420 -11.69587 -11.64264 -11.55717 -11.16770 -11.01520 -10.67076 -10.48198 -10.43364 -10.35264 -10.19736 -9.68689 -9.09550 -8.88573 -8.76937 -8.56254 -7.97002 -6.50590 -3.94056 0.81440 0.84076 3.03483 3.15481 3.22253 3.29468 3.36584 3.51403 3.65380 3.92488 4.11632 4.27195 4.32470 4.35748 4.58527 4.63038 4.81033 4.88027 5.01425 5.09197 5.18957 5.26886 5.65131 5.67886 5.70625 5.78791 5.84685 5.86822 5.94807 6.05997 6.19446 6.38998 6.43617 6.53268 6.64198 7.44120 7.50366 7.92637 8.31172 8.97728 9.03115 9.24937 9.78384 10.58465 Molecular weight = 325.10amu Principal moments of inertia in cm(-1) A = 0.018434 B = 0.003715 C = 0.003499 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1518.585895 B = 7535.212359 C = 7999.667290 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.029 3.971 3 Si 0.929 3.071 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.305 4.305 8 H 0.109 0.891 9 N -0.426 5.426 10 C 0.147 3.853 11 C 0.486 3.514 12 O -0.501 6.501 13 O -0.535 6.535 14 C 0.487 3.513 15 O -0.571 6.571 16 C -0.150 4.150 17 H 0.111 0.889 18 C -0.146 4.146 19 C -0.100 4.100 20 H 0.132 0.868 21 C -0.048 4.048 22 C -0.105 4.105 23 C -0.098 4.098 24 C -0.136 4.136 25 C 0.067 3.933 26 F -0.131 7.131 27 C 0.077 3.923 28 F -0.121 7.121 29 H 0.271 0.729 30 H 0.129 0.871 31 H 0.079 0.921 32 H 0.392 0.608 33 H 0.108 0.892 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.354 -14.358 -7.677 17.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.174 4.174 3 Si 0.756 3.244 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.208 1.208 7 C -0.432 4.432 8 H 0.127 0.873 9 N -0.145 5.145 10 C 0.020 3.980 11 C 0.326 3.674 12 O -0.386 6.386 13 O -0.346 6.346 14 C 0.275 3.725 15 O -0.454 6.454 16 C -0.172 4.172 17 H 0.129 0.871 18 C -0.183 4.183 19 C -0.119 4.119 20 H 0.149 0.851 21 C -0.049 4.049 22 C -0.123 4.123 23 C -0.116 4.116 24 C -0.155 4.155 25 C 0.047 3.953 26 F -0.109 7.109 27 C 0.057 3.943 28 F -0.099 7.099 29 H 0.081 0.919 30 H 0.146 0.854 31 H 0.097 0.903 32 H 0.248 0.752 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.160 0.840 36 H 0.158 0.842 37 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -4.548 -14.214 -7.180 16.561 hybrid contribution -0.429 0.903 1.120 1.501 sum -4.976 -13.311 -6.060 15.449 Atomic orbital electron populations 1.69817 1.06085 1.27882 1.48236 1.25247 0.95317 1.00039 0.96748 0.85812 0.79963 0.80852 0.77790 1.19090 1.20486 1.20848 1.19780 0.97945 0.83237 1.42223 0.87315 1.43353 1.20151 1.05155 1.45798 1.20697 0.81323 1.04786 0.91180 1.23885 0.83347 0.71062 0.89125 1.90637 1.85789 1.44651 1.17494 1.84521 1.17342 1.86366 1.46370 1.19011 0.86960 0.83159 0.83340 1.90538 1.26546 1.86154 1.42173 1.22400 0.99403 0.91375 1.03998 0.87140 1.23122 1.02928 1.01698 0.90579 1.20891 1.00326 0.90578 1.00076 0.85063 1.19218 0.97661 0.96376 0.91603 1.21087 0.94945 0.96812 0.99475 1.21025 0.98822 0.95502 0.96277 1.21038 0.99435 1.02097 0.92915 1.17677 1.00085 0.94748 0.82828 1.91521 1.95676 1.81888 1.41827 1.17511 0.93249 0.96005 0.87564 1.91561 1.67878 1.88592 1.61869 0.91878 0.85359 0.90294 0.75163 0.87387 0.87857 0.83998 0.84202 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.84 9.28 55.50 0.52 -22.33 16 2 C 0.03 0.75 4.87 -17.47 -0.09 0.67 16 3 Si 0.93 20.25 29.60 -169.99 -5.03 15.22 16 4 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.85 7.11 56.52 0.40 -5.44 16 6 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.30 -8.30 9.34 -14.93 -0.14 -8.43 16 8 H 0.11 3.12 7.37 -52.49 -0.39 2.73 16 9 N -0.43 -10.57 2.18 -116.10 -0.25 -10.83 16 10 C 0.15 3.09 4.85 -5.19 -0.03 3.07 16 11 C 0.49 10.57 5.72 36.01 0.21 10.78 16 12 O -0.50 -13.07 16.79 -18.75 -0.31 -13.38 16 13 O -0.53 -9.31 13.42 -39.25 -0.53 -9.83 16 14 C 0.49 11.76 7.20 -10.98 -0.08 11.68 16 15 O -0.57 -15.82 15.90 5.55 0.09 -15.73 16 16 C -0.15 -2.74 4.45 -91.77 -0.41 -3.15 16 17 H 0.11 1.93 6.73 -51.93 -0.35 1.58 16 18 C -0.15 -1.99 9.56 -26.75 -0.26 -2.25 16 19 C -0.10 -1.64 5.31 -91.80 -0.49 -2.12 16 20 H 0.13 2.45 7.39 -51.93 -0.38 2.07 16 21 C -0.05 -0.67 5.61 -104.57 -0.59 -1.26 16 22 C -0.11 -1.11 9.30 -39.58 -0.37 -1.48 16 23 C -0.10 -0.86 10.04 -39.58 -0.40 -1.25 16 24 C -0.14 -1.35 10.02 -39.52 -0.40 -1.74 16 25 C 0.07 0.89 7.31 -39.37 -0.29 0.60 16 26 F -0.13 -1.84 17.18 2.25 0.04 -1.80 16 27 C 0.08 1.19 7.25 -39.36 -0.29 0.90 16 28 F -0.12 -2.17 16.52 2.25 0.04 -2.13 16 29 H 0.27 6.70 8.31 -40.82 -0.34 6.36 16 30 H 0.13 2.81 6.37 -51.93 -0.33 2.48 16 31 H 0.08 1.32 6.99 -51.93 -0.36 0.96 16 32 H 0.39 5.26 9.10 45.56 0.41 5.68 16 33 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 34 H 0.10 1.01 6.18 -51.93 -0.32 0.69 16 35 H 0.14 1.17 6.02 -52.48 -0.32 0.86 16 36 H 0.14 0.75 8.06 -52.49 -0.42 0.33 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 331.75 15.07 5.00 5.00 Total: -1.00 -34.66 331.75 -6.48 -41.14 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -2.44 Total: 8.67 kcal Atomic # 6 Polarization: 9.60 SS G_CDS: -3.60 Total: 6.01 kcal Atomic # 7 Polarization: -33.42 SS G_CDS: 0.26 Total: -33.15 kcal Atomic # 8 Polarization: -38.19 SS G_CDS: -0.75 Total: -38.94 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.08 Total: -3.94 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.03 Total: 15.22 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.66 -6.48 -41.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739078201.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.506 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds