Wall clock time and date at job start Tue Mar 31 2020 14:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31559 * 1 3 3 Si 1.86800 * 120.00087 * 2 1 4 4 H 1.48495 * 109.47366 * 240.00435 * 3 2 1 5 5 H 1.48500 * 109.47023 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46773 * 120.00295 * 3 2 1 7 7 C 1.38655 * 119.99575 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99565 * 179.97438 * 7 2 1 9 9 O 1.34831 * 120.00413 * 359.97438 * 7 2 1 10 10 C 1.35760 * 117.00211 * 174.91751 * 9 7 2 11 11 C 1.39079 * 119.97440 * 5.54925 * 10 9 7 12 12 C 1.38275 * 120.31420 * 180.02562 * 11 10 9 13 13 C 1.37927 * 120.26232 * 359.97438 * 12 11 10 14 14 C 1.40049 * 119.94610 * 359.97438 * 13 12 11 15 15 C 1.46836 * 120.15498 * 180.02562 * 14 13 12 16 16 C 1.36292 * 120.00152 * 143.58209 * 15 14 13 17 17 C 1.47443 * 127.49366 * 351.93573 * 16 15 14 18 18 O 1.21732 * 126.03300 * 0.02562 * 17 16 15 19 19 N 1.34376 * 107.92498 * 180.02562 * 17 16 15 20 20 C 1.39135 * 111.40853 * 359.74566 * 19 17 16 21 21 C 1.39059 * 131.63374 * 179.56747 * 20 19 17 22 22 C 1.38007 * 120.15818 * 180.40489 * 21 20 19 23 23 C 1.38668 * 120.60351 * 0.28219 * 22 21 20 24 24 F 1.35100 * 119.99082 * 179.97438 * 23 22 21 25 25 C 1.38236 * 120.02410 * 359.97139 * 23 22 21 26 26 C 1.39092 * 119.70929 * 0.02609 * 25 23 22 27 27 C 1.38479 * 119.97655 * 185.80591 * 10 9 7 28 28 H 0.97006 * 119.99893 * 359.97438 * 1 2 3 29 29 H 1.08001 * 119.84223 * 0.02562 * 11 10 9 30 30 H 1.07995 * 119.87333 * 180.02562 * 12 11 10 31 31 H 1.07995 * 120.02668 * 180.02562 * 13 12 11 32 32 H 1.08001 * 119.99699 * 323.59060 * 15 14 13 33 33 H 0.97010 * 124.29820 * 179.97438 * 19 17 16 34 34 H 1.07992 * 119.91860 * 0.68557 * 21 20 19 35 35 H 1.08000 * 119.69926 * 180.29576 * 22 21 20 36 36 H 1.07997 * 120.14852 * 180.02562 * 25 23 22 37 37 H 1.07998 * 120.13541 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2496 1.6177 0.0000 4 1 3.1033 1.6965 -1.2125 5 1 1.2846 2.7464 0.0006 6 1 3.1034 1.6963 1.2125 7 6 2.0088 -1.2008 -0.0005 8 1 3.0888 -1.2008 -0.0010 9 8 1.3346 -2.3685 -0.0005 10 6 2.0698 -3.5047 -0.1082 11 6 3.4589 -3.4373 -0.0958 12 6 4.2146 -4.5901 -0.2056 13 6 3.5968 -5.8172 -0.3278 14 6 2.1987 -5.8979 -0.3405 15 6 1.5363 -7.2019 -0.4699 16 6 0.3788 -7.4483 0.2061 17 6 -0.2615 -6.6003 1.2283 18 8 0.1531 -5.5295 1.6326 19 7 -1.3834 -7.2182 1.6347 20 6 -1.5691 -8.4247 0.9671 21 6 -2.5659 -9.3895 1.0625 22 6 -2.5112 -10.5231 0.2772 23 6 -1.4631 -10.7175 -0.6097 24 9 -1.4216 -11.8320 -1.3721 25 6 -0.4607 -9.7714 -0.7139 26 6 -0.5089 -8.6263 0.0742 27 6 1.4361 -4.7294 -0.2357 28 1 -0.4850 0.8401 0.0004 29 1 3.9497 -2.4800 0.0001 30 1 5.2928 -4.5295 -0.1947 31 1 4.1908 -6.7151 -0.4129 32 1 1.9664 -7.9658 -1.1007 33 1 -1.9890 -6.8661 2.3058 34 1 -3.3873 -9.2493 1.7495 35 1 -3.2919 -11.2654 0.3539 36 1 0.3563 -9.9206 -1.4043 37 1 0.3576 -4.7829 -0.2502 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751541829.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:31 Heat of formation + Delta-G solvation = -35.362338 kcal Electronic energy + Delta-G solvation = -25582.388718 eV Core-core repulsion = 21591.038989 eV Total energy + Delta-G solvation = -3991.349729 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.78739 -42.54960 -40.71930 -39.36066 -38.29526 -36.50092 -35.06285 -34.27030 -32.36671 -30.92154 -30.25996 -29.31166 -27.38848 -26.39551 -23.68083 -23.48714 -23.04086 -22.59166 -20.62187 -19.38887 -19.06732 -18.79865 -18.39138 -17.48941 -17.03260 -16.67594 -16.53456 -16.41802 -16.32076 -16.03382 -15.65005 -15.51400 -15.18312 -14.89685 -14.73554 -14.30115 -14.15145 -13.91909 -13.86723 -13.61136 -13.50449 -13.12612 -12.64304 -12.59665 -12.28594 -12.17252 -12.04649 -11.77463 -11.44906 -11.34078 -11.06275 -10.80679 -10.02698 -9.30793 -9.00214 -8.74495 -8.46900 -6.15495 -0.92588 0.10745 0.38091 0.76525 0.96483 1.32280 1.44411 1.49613 1.95283 2.11574 2.17439 2.61584 2.83954 2.98883 3.16693 3.18584 3.41911 3.53342 3.68268 3.99699 4.09141 4.11002 4.25692 4.32747 4.39360 4.47809 4.61079 4.71496 4.78707 4.88412 4.98720 5.07482 5.12625 5.14133 5.18964 5.25769 5.53570 5.63016 5.64354 5.71017 5.80214 5.95400 6.01933 6.16794 6.95913 6.96747 7.81338 8.76974 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.020732 B = 0.002873 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.240495 B = 9744.974950 C =10616.485369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.027 4.027 3 Si 1.022 2.978 4 H -0.254 1.254 5 H -0.272 1.272 6 H -0.258 1.258 7 C -0.414 4.414 8 H 0.103 0.897 9 O -0.237 6.237 10 C 0.097 3.903 11 C -0.225 4.225 12 C -0.086 4.086 13 C -0.148 4.148 14 C -0.073 4.073 15 C 0.065 3.935 16 C -0.190 4.190 17 C 0.533 3.467 18 O -0.526 6.526 19 N -0.650 5.650 20 C 0.122 3.878 21 C -0.102 4.102 22 C -0.108 4.108 23 C 0.066 3.934 24 F -0.141 7.141 25 C -0.096 4.096 26 C -0.082 4.082 27 C -0.124 4.124 28 H 0.272 0.728 29 H 0.121 0.879 30 H 0.155 0.845 31 H 0.168 0.832 32 H 0.196 0.804 33 H 0.424 0.576 34 H 0.166 0.834 35 H 0.172 0.828 36 H 0.162 0.838 37 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.230 -23.725 -0.731 23.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.224 4.224 3 Si 0.840 3.160 4 H -0.178 1.178 5 H -0.196 1.196 6 H -0.182 1.182 7 C -0.490 4.490 8 H 0.120 0.880 9 O -0.144 6.144 10 C 0.048 3.952 11 C -0.244 4.244 12 C -0.104 4.104 13 C -0.166 4.166 14 C -0.073 4.073 15 C 0.047 3.953 16 C -0.194 4.194 17 C 0.324 3.676 18 O -0.403 6.403 19 N -0.293 5.293 20 C 0.024 3.976 21 C -0.122 4.122 22 C -0.127 4.127 23 C 0.046 3.954 24 F -0.120 7.120 25 C -0.115 4.115 26 C -0.086 4.086 27 C -0.144 4.144 28 H 0.081 0.919 29 H 0.138 0.862 30 H 0.173 0.827 31 H 0.186 0.814 32 H 0.213 0.787 33 H 0.264 0.736 34 H 0.184 0.816 35 H 0.189 0.811 36 H 0.180 0.820 37 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.337 -22.962 -0.538 22.970 hybrid contribution -0.456 1.416 0.520 1.576 sum -0.793 -21.546 -0.018 21.561 Atomic orbital electron populations 1.70216 1.08204 1.28747 1.49153 1.26670 0.96873 1.02905 0.95926 0.84620 0.77351 0.74002 0.80019 1.17792 1.19619 1.18191 1.21831 0.92543 0.81540 1.53107 0.88009 1.83973 1.35936 1.12583 1.81950 1.19765 0.91788 0.87895 0.95799 1.21520 0.92750 1.00751 1.09421 1.21118 1.00567 0.91095 0.97593 1.21383 0.92058 0.98773 1.04414 1.18817 0.94262 0.91299 1.02919 1.22711 0.88979 0.93578 0.90050 1.20687 0.98982 0.96804 1.02891 1.19014 0.81117 0.84344 0.83127 1.91092 1.66559 1.21422 1.61227 1.43332 1.25015 1.20115 1.40885 1.18634 0.97215 0.87436 0.94330 1.20404 0.98263 0.91532 1.02025 1.21208 0.98278 0.98535 0.94695 1.17434 0.97717 0.84912 0.95304 1.91505 1.96511 1.49869 1.74087 1.20583 0.99878 0.91181 0.99853 1.18576 0.95392 0.94800 0.99794 1.20487 0.98616 0.90444 1.04820 0.91948 0.86155 0.82713 0.81448 0.78682 0.73572 0.81644 0.81062 0.82007 0.88773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.73 13.67 21.61 0.30 -59.43 16 2 C -0.03 -1.61 5.49 84.83 0.47 -1.14 16 3 Si 1.02 44.59 29.55 68.60 2.03 46.61 16 4 H -0.25 -10.26 7.11 99.48 0.71 -9.56 16 5 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 6 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 7 C -0.41 -25.46 9.49 67.92 0.64 -24.81 16 8 H 0.10 5.67 5.19 -2.91 -0.02 5.66 16 9 O -0.24 -15.43 9.75 -22.86 -0.22 -15.65 16 10 C 0.10 5.24 6.64 22.53 0.15 5.39 16 11 C -0.23 -10.20 9.17 22.48 0.21 -10.00 16 12 C -0.09 -2.90 10.02 22.20 0.22 -2.68 16 13 C -0.15 -4.41 9.80 22.64 0.22 -4.18 16 14 C -0.07 -2.55 5.46 -20.18 -0.11 -2.66 16 15 C 0.06 1.65 9.85 24.07 0.24 1.89 16 16 C -0.19 -5.38 6.02 -18.69 -0.11 -5.49 16 17 C 0.53 18.78 7.64 86.73 0.66 19.44 16 18 O -0.53 -24.50 13.86 -4.45 -0.06 -24.56 16 19 N -0.65 -17.05 5.92 -306.34 -1.81 -18.87 16 20 C 0.12 2.58 7.17 38.62 0.28 2.85 16 21 C -0.10 -1.40 10.06 22.41 0.23 -1.18 16 22 C -0.11 -1.33 9.99 22.32 0.22 -1.11 16 23 C 0.07 1.04 7.30 22.37 0.16 1.20 16 24 F -0.14 -2.34 17.27 44.97 0.78 -1.57 16 25 C -0.10 -1.61 10.07 22.47 0.23 -1.38 16 26 C -0.08 -1.82 6.29 -20.01 -0.13 -1.94 16 27 C -0.12 -5.91 6.95 22.74 0.16 -5.75 16 28 H 0.27 16.04 8.31 -92.70 -0.77 15.27 16 29 H 0.12 5.49 5.62 -2.91 -0.02 5.47 16 30 H 0.16 3.88 8.06 -2.91 -0.02 3.86 16 31 H 0.17 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.20 2.75 8.06 -2.91 -0.02 2.72 16 33 H 0.42 9.30 8.96 -92.70 -0.83 8.47 16 34 H 0.17 1.31 8.06 -2.91 -0.02 1.29 16 35 H 0.17 1.09 8.06 -2.91 -0.02 1.07 16 36 H 0.16 1.92 8.06 -2.91 -0.02 1.89 16 37 H 0.09 4.87 6.04 -2.91 -0.02 4.85 16 Total: -1.00 -86.43 331.22 5.06 -81.37 By element: Atomic # 1 Polarization: 23.32 SS G_CDS: 0.33 Total: 23.65 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 3.73 Total: -31.55 kcal Atomic # 7 Polarization: -76.78 SS G_CDS: -1.52 Total: -78.30 kcal Atomic # 8 Polarization: -39.92 SS G_CDS: -0.28 Total: -40.21 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.78 Total: -1.57 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.61 kcal Total: -86.43 5.06 -81.37 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751541829.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.003 kcal (2) G-P(sol) polarization free energy of solvation -86.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.362 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds