Wall clock time and date at job start Tue Mar 31 2020 14:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47552 * 269.99805 * 3 2 1 5 5 H 1.48506 * 109.47279 * 29.99798 * 3 2 1 6 6 H 1.48500 * 109.47097 * 149.99884 * 3 2 1 7 7 C 1.38654 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00218 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.35762 * 116.99624 * 185.65854 * 9 7 2 11 11 C 1.39081 * 119.97463 * 186.20676 * 10 9 7 12 12 C 1.38279 * 120.31306 * 179.97438 * 11 10 9 13 13 C 1.37932 * 120.26138 * 359.75903 * 12 11 10 14 14 C 1.40040 * 119.94517 * 0.54548 * 13 12 11 15 15 C 1.46837 * 120.15113 * 179.71455 * 14 13 12 16 16 C 1.36292 * 120.00069 * 316.13679 * 15 14 13 17 17 C 1.47434 * 127.49552 * 170.18699 * 16 15 14 18 18 O 1.21728 * 126.03691 * 359.97438 * 17 16 15 19 19 N 1.34384 * 107.92547 * 179.97438 * 17 16 15 20 20 C 1.39131 * 111.40924 * 359.97438 * 19 17 16 21 21 C 1.39048 * 131.63789 * 180.02562 * 20 19 17 22 22 C 1.38013 * 120.16626 * 179.97438 * 21 20 19 23 23 C 1.38677 * 120.59297 * 0.02562 * 22 21 20 24 24 F 1.35098 * 119.98294 * 179.97438 * 23 22 21 25 25 C 1.38236 * 120.02661 * 359.95794 * 23 22 21 26 26 C 1.39088 * 119.70921 * 0.27473 * 25 23 22 27 27 C 1.38481 * 119.97941 * 6.22791 * 10 9 7 28 28 H 0.96996 * 119.99987 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.84129 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.86870 * 180.02562 * 12 11 10 31 31 H 1.07999 * 120.02190 * 180.24943 * 13 12 11 32 32 H 1.08004 * 119.99752 * 136.13613 * 15 14 13 33 33 H 0.97010 * 124.29488 * 180.02562 * 19 17 16 34 34 H 1.08007 * 119.91696 * 359.93916 * 21 20 19 35 35 H 1.07992 * 119.70311 * 179.97438 * 22 21 20 36 36 H 1.07993 * 120.14200 * 180.02562 * 25 23 22 37 37 H 1.07997 * 120.13268 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0691 -3.5040 0.1204 11 6 1.4540 -4.7454 -0.0018 12 6 2.1953 -5.9065 0.1185 13 6 3.5526 -5.8431 0.3558 14 6 4.1820 -4.5991 0.4870 15 6 5.6255 -4.5265 0.7459 16 6 6.1953 -5.3549 1.6660 17 6 7.6331 -5.5659 1.9150 18 8 8.5492 -5.0227 1.3255 19 7 7.7536 -6.4638 2.9075 20 6 6.5091 -6.8878 3.3627 21 6 6.1472 -7.7906 4.3563 22 6 4.8147 -8.0383 4.6165 23 6 3.8226 -7.3934 3.8933 24 9 2.5220 -7.6456 4.1579 25 6 4.1640 -6.4925 2.9020 26 6 5.5049 -6.2413 2.6308 27 6 3.4300 -3.4255 0.3645 28 1 -0.4850 0.8400 -0.0004 29 1 0.3924 -4.8027 -0.1915 30 1 1.7104 -6.8666 0.0219 31 1 4.1285 -6.7524 0.4450 32 1 6.2357 -3.8167 0.2072 33 1 8.6008 -6.7761 3.2622 34 1 6.9109 -8.2998 4.9256 35 1 4.5421 -8.7413 5.3896 36 1 3.3930 -5.9889 2.3379 37 1 3.9089 -2.4623 0.4604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000751541831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:35 Heat of formation + Delta-G solvation = -17.575270 kcal Electronic energy + Delta-G solvation = -25980.926763 eV Core-core repulsion = 21990.348339 eV Total energy + Delta-G solvation = -3990.578424 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.81826 -41.58944 -39.24951 -38.30181 -36.92842 -35.53018 -33.96438 -32.34289 -31.21178 -29.55307 -29.07833 -28.53620 -25.73153 -25.00554 -22.83807 -22.24929 -21.64496 -21.31522 -19.31789 -18.19243 -17.84569 -17.70509 -16.85876 -16.43767 -15.80677 -15.72548 -15.34834 -15.27944 -15.10042 -14.61010 -14.43803 -14.23914 -13.85527 -13.68832 -13.35091 -13.25577 -12.91308 -12.83132 -12.63604 -12.58251 -11.81968 -11.72793 -11.16328 -11.06704 -10.96335 -10.81010 -10.72294 -10.51839 -10.37774 -10.23779 -9.58609 -9.00930 -8.82097 -8.26676 -7.84763 -7.36944 -6.55422 -4.15419 0.16553 0.99121 1.41683 2.04622 2.18387 2.80307 3.07098 3.09141 3.13271 3.13693 3.52406 3.88321 3.98969 4.15414 4.33939 4.38041 4.58998 4.85358 4.98092 5.02690 5.07310 5.12444 5.37541 5.47867 5.50620 5.68503 5.79671 5.82440 5.87671 6.02575 6.04463 6.11515 6.19347 6.47066 6.49227 6.56964 6.64959 6.82470 6.87969 7.01474 7.05209 7.22983 7.53153 7.86149 7.87233 8.89617 9.55676 10.61858 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.003693 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.736265 B = 7580.260269 C = 8734.300579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.858 5.858 2 C 0.042 3.958 3 Si 0.940 3.060 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.396 4.396 8 H 0.092 0.908 9 O -0.172 6.172 10 C 0.147 3.853 11 C -0.169 4.169 12 C -0.085 4.085 13 C -0.179 4.179 14 C -0.060 4.060 15 C 0.073 3.927 16 C -0.192 4.192 17 C 0.565 3.435 18 O -0.509 6.509 19 N -0.653 5.653 20 C 0.127 3.873 21 C -0.114 4.114 22 C -0.124 4.124 23 C 0.076 3.924 24 F -0.136 7.136 25 C -0.102 4.102 26 C -0.061 4.061 27 C -0.198 4.198 28 H 0.272 0.728 29 H 0.122 0.878 30 H 0.119 0.881 31 H 0.114 0.886 32 H 0.144 0.856 33 H 0.416 0.584 34 H 0.134 0.866 35 H 0.140 0.860 36 H 0.164 0.836 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.475 -14.526 7.182 19.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.492 5.492 2 C -0.163 4.163 3 Si 0.764 3.236 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.472 4.472 8 H 0.110 0.890 9 O -0.075 6.075 10 C 0.093 3.907 11 C -0.188 4.188 12 C -0.103 4.103 13 C -0.198 4.198 14 C -0.061 4.061 15 C 0.054 3.946 16 C -0.196 4.196 17 C 0.356 3.644 18 O -0.386 6.386 19 N -0.295 5.295 20 C 0.029 3.971 21 C -0.135 4.135 22 C -0.143 4.143 23 C 0.056 3.944 24 F -0.115 7.115 25 C -0.121 4.121 26 C -0.064 4.064 27 C -0.217 4.217 28 H 0.082 0.918 29 H 0.140 0.860 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.162 0.838 33 H 0.255 0.745 34 H 0.152 0.848 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 10.471 -13.933 6.771 18.698 hybrid contribution 0.714 0.584 0.366 0.992 sum 11.185 -13.349 7.137 18.822 Atomic orbital electron populations 1.70029 1.06000 1.27931 1.45227 1.25295 0.95845 0.98897 0.96240 0.85722 0.78993 0.79971 0.78865 1.19738 1.20148 1.19084 1.21307 0.91773 0.80742 1.53343 0.89021 1.84026 1.34079 1.11426 1.77969 1.19241 0.90078 0.88325 0.93089 1.20456 1.00341 0.89953 1.08067 1.20613 0.93390 0.97214 0.99096 1.20817 0.94851 0.95642 1.08446 1.18602 0.91061 0.93856 1.02540 1.22553 0.93907 0.89798 0.88345 1.20503 0.92455 1.04495 1.02119 1.18301 0.89297 0.78173 0.78604 1.90896 1.46188 1.50487 1.51008 1.43228 1.07417 1.42715 1.36184 1.18258 0.84662 0.97322 0.96886 1.19972 0.95966 0.99381 0.98218 1.20844 0.91385 1.01316 1.00756 1.17397 0.78473 1.00065 0.98458 1.91514 1.33669 1.93132 1.93188 1.21364 0.96450 0.97224 0.97026 1.18605 0.91887 0.98389 0.97528 1.21351 0.94419 0.97800 1.08137 0.91827 0.86032 0.86263 0.86769 0.83796 0.74546 0.84796 0.84204 0.81925 0.84779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.28 13.67 55.48 0.76 -23.52 16 2 C 0.04 1.12 5.49 -17.51 -0.10 1.03 16 3 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 7 C -0.40 -10.50 9.43 30.89 0.29 -10.21 16 8 H 0.09 2.23 5.31 -52.49 -0.28 1.95 16 9 O -0.17 -4.62 9.76 0.01 0.00 -4.62 16 10 C 0.15 3.25 6.64 -39.18 -0.26 2.99 16 11 C -0.17 -3.21 9.99 -39.25 -0.39 -3.61 16 12 C -0.08 -1.34 9.75 -39.68 -0.39 -1.73 16 13 C -0.18 -2.75 5.93 -39.02 -0.23 -2.98 16 14 C -0.06 -1.00 4.99 -105.11 -0.52 -1.53 16 15 C 0.07 1.07 9.80 -36.81 -0.36 0.71 16 16 C -0.19 -2.74 5.99 -102.81 -0.62 -3.36 16 17 C 0.56 7.94 8.46 -12.69 -0.11 7.84 16 18 O -0.51 -8.49 18.05 5.16 0.09 -8.40 16 19 N -0.65 -7.04 5.92 -10.75 -0.06 -7.10 16 20 C 0.13 1.41 7.17 -83.56 -0.60 0.81 16 21 C -0.11 -1.00 10.06 -39.36 -0.40 -1.40 16 22 C -0.12 -1.17 9.99 -39.50 -0.39 -1.57 16 23 C 0.08 0.94 7.30 -39.42 -0.29 0.65 16 24 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 25 C -0.10 -1.39 8.17 -39.27 -0.32 -1.71 16 26 C -0.06 -0.81 5.57 -104.85 -0.58 -1.39 16 27 C -0.20 -3.90 8.88 -38.86 -0.35 -4.25 16 28 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 29 H 0.12 2.23 8.06 -52.49 -0.42 1.81 16 30 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 31 H 0.11 1.59 6.85 -52.49 -0.36 1.23 16 32 H 0.14 1.92 8.06 -52.48 -0.42 1.50 16 33 H 0.42 3.21 8.96 -40.82 -0.37 2.84 16 34 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 35 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.16 2.45 4.52 -52.49 -0.24 2.22 16 37 H 0.13 2.67 5.72 -52.49 -0.30 2.37 16 LS Contribution 329.10 15.07 4.96 4.96 Total: -1.00 -30.63 329.10 -7.64 -38.27 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -2.79 Total: 7.09 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: -5.61 Total: -19.71 kcal Atomic # 7 Polarization: -31.32 SS G_CDS: 0.69 Total: -30.62 kcal Atomic # 8 Polarization: -13.11 SS G_CDS: 0.09 Total: -13.02 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.63 -7.64 -38.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751541831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.691 kcal (2) G-P(sol) polarization free energy of solvation -30.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds