Wall clock time and date at job start Tue Mar 31 2020 14:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31560 * 1 3 3 Si 1.86798 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47552 * 269.99805 * 3 2 1 5 5 H 1.48506 * 109.47279 * 29.99798 * 3 2 1 6 6 H 1.48500 * 109.47097 * 149.99884 * 3 2 1 7 7 C 1.38654 * 120.00355 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00218 * 179.97438 * 7 2 1 9 9 O 1.34831 * 119.99576 * 0.02562 * 7 2 1 10 10 C 1.35762 * 116.99624 * 185.65854 * 9 7 2 11 11 C 1.39081 * 119.97463 * 186.20676 * 10 9 7 12 12 C 1.38279 * 120.31306 * 179.97438 * 11 10 9 13 13 C 1.37932 * 120.26138 * 359.75903 * 12 11 10 14 14 C 1.40040 * 119.94517 * 0.54548 * 13 12 11 15 15 C 1.46837 * 120.15113 * 179.71455 * 14 13 12 16 16 C 1.36292 * 120.00069 * 316.13679 * 15 14 13 17 17 C 1.47434 * 127.49552 * 170.18699 * 16 15 14 18 18 O 1.21728 * 126.03691 * 359.97438 * 17 16 15 19 19 N 1.34384 * 107.92547 * 179.97438 * 17 16 15 20 20 C 1.39131 * 111.40924 * 359.97438 * 19 17 16 21 21 C 1.39048 * 131.63789 * 180.02562 * 20 19 17 22 22 C 1.38013 * 120.16626 * 179.97438 * 21 20 19 23 23 C 1.38677 * 120.59297 * 0.02562 * 22 21 20 24 24 F 1.35098 * 119.98294 * 179.97438 * 23 22 21 25 25 C 1.38236 * 120.02661 * 359.95794 * 23 22 21 26 26 C 1.39088 * 119.70921 * 0.27473 * 25 23 22 27 27 C 1.38481 * 119.97941 * 6.22791 * 10 9 7 28 28 H 0.96996 * 119.99987 * 0.02562 * 1 2 3 29 29 H 1.07996 * 119.84129 * 359.97438 * 11 10 9 30 30 H 1.07997 * 119.86870 * 180.02562 * 12 11 10 31 31 H 1.07999 * 120.02190 * 180.24943 * 13 12 11 32 32 H 1.08004 * 119.99752 * 136.13613 * 15 14 13 33 33 H 0.97010 * 124.29488 * 180.02562 * 19 17 16 34 34 H 1.08007 * 119.91696 * 359.93916 * 21 20 19 35 35 H 1.07992 * 119.70311 * 179.97438 * 22 21 20 36 36 H 1.07993 * 120.14200 * 180.02562 * 25 23 22 37 37 H 1.07997 * 120.13268 * 0.02562 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3156 0.0000 0.0000 3 14 2.2495 1.6178 0.0000 4 1 2.4971 2.0465 -1.4001 5 1 1.4469 2.6527 0.7000 6 1 3.5471 1.4402 0.7001 7 6 2.0089 -1.2007 0.0005 8 1 3.0889 -1.2007 0.0001 9 8 1.3348 -2.3684 0.0005 10 6 2.0691 -3.5040 0.1204 11 6 1.4540 -4.7454 -0.0018 12 6 2.1953 -5.9065 0.1185 13 6 3.5526 -5.8431 0.3558 14 6 4.1820 -4.5991 0.4870 15 6 5.6255 -4.5265 0.7459 16 6 6.1953 -5.3549 1.6660 17 6 7.6331 -5.5659 1.9150 18 8 8.5492 -5.0227 1.3255 19 7 7.7536 -6.4638 2.9075 20 6 6.5091 -6.8878 3.3627 21 6 6.1472 -7.7906 4.3563 22 6 4.8147 -8.0383 4.6165 23 6 3.8226 -7.3934 3.8933 24 9 2.5220 -7.6456 4.1579 25 6 4.1640 -6.4925 2.9020 26 6 5.5049 -6.2413 2.6308 27 6 3.4300 -3.4255 0.3645 28 1 -0.4850 0.8400 -0.0004 29 1 0.3924 -4.8027 -0.1915 30 1 1.7104 -6.8666 0.0219 31 1 4.1285 -6.7524 0.4450 32 1 6.2357 -3.8167 0.2072 33 1 8.6008 -6.7761 3.2622 34 1 6.9109 -8.2998 4.9256 35 1 4.5421 -8.7413 5.3896 36 1 3.3930 -5.9889 2.3379 37 1 3.9089 -2.4623 0.4604 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000751541831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:44:34 Heat of formation + Delta-G solvation = -36.003248 kcal Electronic energy + Delta-G solvation = -25981.725861 eV Core-core repulsion = 21990.348339 eV Total energy + Delta-G solvation = -3991.377521 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.79410 -42.60464 -40.83773 -39.36571 -38.51036 -36.53336 -35.23526 -34.20539 -32.33880 -30.69606 -30.57669 -29.54873 -27.47953 -26.31659 -23.82137 -23.46488 -23.06216 -22.49633 -20.56955 -19.71715 -19.09861 -18.81123 -18.20971 -17.52925 -16.93419 -16.74697 -16.70902 -16.47508 -16.33596 -16.12357 -15.86469 -15.56859 -15.31977 -15.01203 -14.63383 -14.26577 -14.14782 -13.98843 -13.81299 -13.75992 -13.55059 -13.12237 -12.67363 -12.53180 -12.45689 -12.13947 -11.92023 -11.80384 -11.52915 -11.44554 -11.21927 -10.79924 -10.04207 -9.46305 -9.03161 -8.80821 -8.48549 -6.16913 -0.96496 0.08025 0.32997 0.62318 0.84863 1.35252 1.43337 1.51478 1.87180 2.01376 2.16135 2.60777 2.76543 2.95947 3.08918 3.13949 3.45408 3.51740 3.63906 3.86175 4.05571 4.09770 4.21693 4.25352 4.35924 4.43620 4.53295 4.65752 4.84301 4.93685 5.00626 5.02345 5.05675 5.11624 5.16531 5.21173 5.47825 5.52702 5.57978 5.60818 5.74675 5.91646 5.98767 6.04440 6.87483 6.96346 7.74641 8.74155 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.013218 B = 0.003693 C = 0.003205 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.736265 B = 7580.260269 C = 8734.300579 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C -0.018 4.018 3 Si 1.013 2.987 4 H -0.263 1.263 5 H -0.271 1.271 6 H -0.254 1.254 7 C -0.413 4.413 8 H 0.101 0.899 9 O -0.227 6.227 10 C 0.112 3.888 11 C -0.179 4.179 12 C -0.072 4.072 13 C -0.151 4.151 14 C -0.050 4.050 15 C 0.050 3.950 16 C -0.181 4.181 17 C 0.564 3.436 18 O -0.538 6.538 19 N -0.634 5.634 20 C 0.129 3.871 21 C -0.092 4.092 22 C -0.106 4.106 23 C 0.062 3.938 24 F -0.146 7.146 25 C -0.116 4.116 26 C -0.089 4.089 27 C -0.209 4.209 28 H 0.273 0.727 29 H 0.121 0.879 30 H 0.159 0.841 31 H 0.141 0.859 32 H 0.152 0.848 33 H 0.434 0.566 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.140 0.860 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.448 -17.815 9.189 24.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.216 4.216 3 Si 0.832 3.168 4 H -0.188 1.188 5 H -0.196 1.196 6 H -0.178 1.178 7 C -0.489 4.489 8 H 0.118 0.882 9 O -0.134 6.134 10 C 0.062 3.938 11 C -0.198 4.198 12 C -0.090 4.090 13 C -0.169 4.169 14 C -0.051 4.051 15 C 0.031 3.969 16 C -0.184 4.184 17 C 0.355 3.645 18 O -0.417 6.417 19 N -0.278 5.278 20 C 0.031 3.969 21 C -0.112 4.112 22 C -0.125 4.125 23 C 0.042 3.958 24 F -0.125 7.125 25 C -0.135 4.135 26 C -0.092 4.092 27 C -0.228 4.228 28 H 0.082 0.918 29 H 0.139 0.861 30 H 0.177 0.823 31 H 0.159 0.841 32 H 0.170 0.830 33 H 0.276 0.724 34 H 0.197 0.803 35 H 0.192 0.808 36 H 0.158 0.842 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 13.485 -17.303 8.805 23.638 hybrid contribution -0.030 1.117 -0.090 1.121 sum 13.455 -16.186 8.715 22.780 Atomic orbital electron populations 1.70168 1.07921 1.28822 1.48567 1.26494 0.96772 1.02546 0.95810 0.84664 0.77865 0.74940 0.79292 1.18793 1.19612 1.17804 1.21756 0.92415 0.81428 1.53349 0.88169 1.83981 1.35606 1.12492 1.81290 1.19759 0.91208 0.88246 0.94613 1.20705 1.00824 0.90006 1.08284 1.21016 0.93423 0.97580 0.97000 1.21194 0.94856 0.96083 1.04807 1.18730 0.92032 0.93182 1.01123 1.22457 0.92786 0.91424 0.90219 1.20700 0.93170 1.03395 1.01161 1.18246 0.88650 0.78531 0.79066 1.90887 1.46820 1.51754 1.52247 1.42998 1.08342 1.41477 1.34944 1.18441 0.83843 0.97466 0.97112 1.20448 0.96660 0.97504 0.96628 1.21256 0.90811 1.00341 1.00086 1.17636 0.78734 1.00523 0.98913 1.91494 1.34563 1.93213 1.93256 1.21153 0.96020 0.98212 0.98136 1.18604 0.92431 0.99627 0.98560 1.21344 0.93801 0.98707 1.08953 0.91794 0.86088 0.82314 0.84110 0.83033 0.72419 0.80340 0.80821 0.84234 0.85867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.36 13.67 21.61 0.30 -55.07 16 2 C -0.02 -1.01 5.49 84.83 0.47 -0.54 16 3 Si 1.01 42.41 29.55 68.60 2.03 44.44 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.79 16 5 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 6 H -0.25 -9.96 7.11 99.48 0.71 -9.25 16 7 C -0.41 -23.47 9.43 67.92 0.64 -22.83 16 8 H 0.10 5.22 5.31 -2.91 -0.02 5.20 16 9 O -0.23 -13.20 9.76 -22.88 -0.22 -13.42 16 10 C 0.11 5.29 6.64 22.53 0.15 5.44 16 11 C -0.18 -7.03 9.99 22.48 0.22 -6.81 16 12 C -0.07 -2.19 9.75 22.21 0.22 -1.97 16 13 C -0.15 -4.42 5.93 22.63 0.13 -4.29 16 14 C -0.05 -1.68 4.99 -20.18 -0.10 -1.78 16 15 C 0.05 1.45 9.80 24.07 0.24 1.69 16 16 C -0.18 -4.87 5.99 -18.69 -0.11 -4.98 16 17 C 0.56 14.62 8.46 86.73 0.73 15.35 16 18 O -0.54 -17.17 18.05 -4.44 -0.08 -17.25 16 19 N -0.63 -11.27 5.92 -306.35 -1.81 -13.08 16 20 C 0.13 2.31 7.17 38.62 0.28 2.59 16 21 C -0.09 -1.06 10.06 22.41 0.23 -0.84 16 22 C -0.11 -1.45 9.99 22.32 0.22 -1.22 16 23 C 0.06 1.33 7.30 22.37 0.16 1.49 16 24 F -0.15 -3.58 17.27 44.97 0.78 -2.80 16 25 C -0.12 -2.92 8.17 22.47 0.18 -2.74 16 26 C -0.09 -2.14 5.57 -20.01 -0.11 -2.25 16 27 C -0.21 -8.67 8.88 22.74 0.20 -8.47 16 28 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 29 H 0.12 4.67 8.06 -2.91 -0.02 4.64 16 30 H 0.16 3.58 8.06 -2.91 -0.02 3.55 16 31 H 0.14 3.47 6.85 -2.91 -0.02 3.45 16 32 H 0.15 4.10 8.06 -2.91 -0.02 4.07 16 33 H 0.43 4.79 8.96 -92.70 -0.83 3.96 16 34 H 0.18 0.59 8.06 -2.91 -0.02 0.57 16 35 H 0.17 1.28 8.06 -2.91 -0.02 1.25 16 36 H 0.14 4.08 4.52 -2.91 -0.01 4.07 16 37 H 0.12 5.28 5.72 -2.91 -0.02 5.26 16 Total: -1.00 -73.33 329.10 5.07 -68.26 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.34 Total: 21.09 kcal Atomic # 6 Polarization: -35.92 SS G_CDS: 3.75 Total: -32.17 kcal Atomic # 7 Polarization: -66.63 SS G_CDS: -1.52 Total: -68.15 kcal Atomic # 8 Polarization: -30.37 SS G_CDS: -0.30 Total: -30.67 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.78 Total: -2.80 kcal Atomic # 14 Polarization: 42.41 SS G_CDS: 2.03 Total: 44.44 kcal Total: -73.33 5.07 -68.26 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000751541831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.259 kcal (2) G-P(sol) polarization free energy of solvation -73.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds