Wall clock time and date at job start Tue Mar 31 2020 14:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39654 * 120.13334 * 145.56490 * 3 2 1 5 5 C 1.37936 * 119.89605 * 179.72462 * 4 3 2 6 6 C 1.38350 * 120.18001 * 0.50328 * 5 4 3 7 7 C 1.50693 * 119.86067 * 179.76997 * 6 5 4 8 8 O 1.45200 * 109.47169 * 359.72293 * 7 6 5 9 9 C 1.34775 * 116.99950 * 180.02562 * 8 7 6 10 10 O 1.21505 * 120.00131 * 0.02562 * 9 8 7 11 11 C 1.47508 * 120.00071 * 179.72035 * 9 8 7 12 12 C 1.40066 * 119.89924 * 0.02562 * 11 9 8 13 13 C 1.36306 * 120.10056 * 179.75324 * 12 11 9 14 14 C 1.40895 * 119.89553 * 0.54079 * 13 12 11 15 15 C 1.41091 * 120.09797 * 179.69407 * 14 13 12 16 16 H 1.08001 * 120.00385 * 204.66104 * 15 14 13 17 17 C 1.40249 * 119.99988 * 24.65675 * 15 14 13 18 18 N 1.30631 * 119.99887 * 17.87870 * 17 15 14 19 19 Si 1.86798 * 119.99967 * 197.87926 * 17 15 14 20 20 H 1.48495 * 109.47247 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47099 * 120.00351 * 19 17 15 22 22 H 1.48504 * 109.47190 * 239.99883 * 19 17 15 23 23 C 1.40898 * 119.80274 * 359.71376 * 14 13 12 24 24 C 1.36298 * 119.90137 * 359.97438 * 23 14 13 25 25 C 1.38563 * 120.27665 * 359.49134 * 6 5 4 26 26 F 1.35101 * 119.94816 * 180.27931 * 25 6 5 27 27 C 1.38197 * 120.09901 * 0.25511 * 25 6 5 28 28 H 1.08002 * 120.05438 * 359.96953 * 4 3 2 29 29 H 1.08004 * 119.91096 * 180.24900 * 5 4 3 30 30 H 1.09006 * 109.47116 * 239.72244 * 7 6 5 31 31 H 1.09001 * 109.47449 * 119.72568 * 7 6 5 32 32 H 1.08002 * 119.94684 * 0.02562 * 12 11 9 33 33 H 1.08004 * 120.04604 * 180.25223 * 13 12 11 34 34 H 0.97002 * 120.00269 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.04752 * 179.97438 * 23 14 13 36 36 H 1.07994 * 119.95121 * 179.97438 * 24 23 14 37 37 H 1.07998 * 120.09117 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.9971 -0.6830 5 6 4.6480 0.9963 -0.6750 6 6 5.3390 0.0052 -0.0010 7 6 6.8459 0.0083 -0.0014 8 8 7.3274 1.1380 -0.7761 9 6 8.6632 1.2860 -0.8768 10 8 9.4052 0.4925 -0.3325 11 6 9.2246 2.4074 -1.6534 12 6 8.3674 3.3175 -2.2849 13 6 8.8817 4.3582 -2.9994 14 6 10.2779 4.5110 -3.1116 15 6 10.8148 5.5830 -3.8554 16 1 11.8048 5.5035 -4.2796 17 6 10.0628 6.7517 -4.0442 18 7 9.0414 7.0033 -3.2697 19 14 10.5218 7.9484 -5.4030 20 1 11.7093 7.4366 -6.1332 21 1 9.3827 8.0879 -6.3454 22 1 10.8387 9.2726 -4.8102 23 6 11.1362 3.5900 -2.4790 24 6 10.6132 2.5560 -1.7613 25 6 4.6513 -0.9870 0.6791 26 9 5.3328 -1.9484 1.3397 27 6 3.2693 -0.9943 0.6830 28 1 2.7314 1.7695 -1.2133 29 1 5.1901 1.7691 -1.1998 30 1 7.2111 -0.9183 -0.4445 31 1 7.2094 0.0889 1.0231 32 1 7.2974 3.1971 -2.2019 33 1 8.2200 5.0618 -3.4826 34 1 8.5215 7.8118 -3.3999 35 1 12.2070 3.7031 -2.5628 36 1 11.2704 1.8493 -1.2765 37 1 2.7334 -1.7679 1.2129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000758685702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:26 Heat of formation + Delta-G solvation = -65.171254 kcal Electronic energy + Delta-G solvation = -24750.194871 eV Core-core repulsion = 20757.552530 eV Total energy + Delta-G solvation = -3992.642341 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -49.26129 -40.07853 -39.38615 -37.57185 -36.82794 -35.78271 -34.03160 -32.64210 -31.10585 -30.42754 -29.59066 -27.64389 -26.06153 -23.55435 -22.91896 -22.09743 -21.04489 -20.08213 -19.56049 -17.64632 -17.28410 -16.97808 -16.55508 -16.36871 -16.11595 -15.68549 -15.65446 -15.28639 -14.29592 -14.25412 -14.14222 -13.95881 -13.63569 -13.46964 -13.34742 -13.10826 -12.92986 -12.64063 -12.22145 -12.17836 -12.07475 -11.69825 -11.65839 -11.47794 -11.36727 -11.06236 -10.79408 -10.53001 -10.20653 -9.70486 -9.57186 -9.45391 -9.37614 -9.04593 -7.84191 -7.72362 -7.17665 -4.75420 0.20791 0.74743 1.95540 2.26238 2.46765 2.79770 2.88221 2.93647 2.95268 3.04035 3.33086 3.35879 3.53536 3.64855 3.93867 4.34544 4.38398 4.38907 4.56026 4.81369 5.19030 5.25215 5.34251 5.43791 5.44275 5.58357 5.76055 5.84840 6.01161 6.12880 6.17937 6.33507 6.66528 6.71594 6.88687 6.90274 7.01140 7.07674 7.33085 7.58287 7.69775 7.74922 7.92735 8.27253 8.48727 8.59926 8.61406 9.73356 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.002556 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.712571 B =10953.870810 C =12680.759143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.411 5.411 2 C 0.258 3.742 3 C -0.006 4.006 4 C -0.076 4.076 5 C -0.068 4.068 6 C -0.087 4.087 7 C 0.105 3.895 8 O -0.357 6.357 9 C 0.517 3.483 10 O -0.549 6.549 11 C -0.276 4.276 12 C -0.042 4.042 13 C -0.185 4.185 14 C 0.131 3.869 15 C -0.431 4.431 16 H 0.088 0.912 17 C 0.073 3.927 18 N -0.762 5.762 19 Si 0.915 3.085 20 H -0.256 1.256 21 H -0.267 1.267 22 H -0.270 1.270 23 C -0.239 4.239 24 C -0.017 4.017 25 C 0.105 3.895 26 F -0.129 7.129 27 C -0.106 4.106 28 H 0.144 0.856 29 H 0.160 0.840 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.122 0.878 34 H 0.289 0.711 35 H 0.101 0.899 36 H 0.103 0.897 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -7.370 3.155 11.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.058 4.058 3 C -0.010 4.010 4 C -0.096 4.096 5 C -0.086 4.086 6 C -0.089 4.089 7 C 0.031 3.969 8 O -0.275 6.275 9 C 0.370 3.630 10 O -0.443 6.443 11 C -0.278 4.278 12 C -0.061 4.061 13 C -0.204 4.204 14 C 0.127 3.873 15 C -0.458 4.458 16 H 0.106 0.894 17 C -0.150 4.150 18 N -0.384 5.384 19 Si 0.738 3.262 20 H -0.179 1.179 21 H -0.192 1.192 22 H -0.195 1.195 23 C -0.258 4.258 24 C -0.036 4.036 25 C 0.085 3.915 26 F -0.107 7.107 27 C -0.127 4.127 28 H 0.162 0.838 29 H 0.177 0.823 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.119 0.881 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.120 0.880 36 H 0.121 0.879 37 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.364 -7.466 3.409 13.221 hybrid contribution 0.683 0.267 -0.203 0.761 sum -9.681 -7.199 3.207 12.484 Atomic orbital electron populations 1.81279 1.11912 1.07456 1.07963 1.25509 0.92407 0.93955 0.93933 1.15684 0.84483 0.98157 1.02641 1.21341 0.94190 0.97020 0.97077 1.21049 0.92992 0.97752 0.96795 1.20046 0.95695 0.95105 0.98013 1.21418 0.88531 0.89791 0.97170 1.86520 1.26479 1.46945 1.67588 1.21579 0.78515 0.84853 0.78076 1.90721 1.59815 1.45521 1.48199 1.18156 0.93531 1.00759 1.15391 1.20604 0.97365 0.93319 0.94834 1.21016 0.95521 0.99028 1.04822 1.17862 0.92007 0.90481 0.86939 1.19984 1.02130 0.97609 1.26088 0.89385 1.26167 0.93701 0.99290 0.95851 1.69737 1.13776 1.24165 1.30710 0.86130 0.80202 0.79304 0.80555 1.17943 1.19217 1.19534 1.20688 0.98273 1.00290 1.06538 1.20351 0.92661 0.95563 0.94988 1.17034 0.89321 0.88357 0.96743 1.91551 1.79686 1.61146 1.78362 1.20973 0.91971 0.99405 1.00349 0.83837 0.82265 0.89424 0.89418 0.88081 0.86005 0.89970 0.88036 0.87913 0.83512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -4.85 18.54 41.84 0.78 -4.08 16 2 C 0.26 2.45 15.33 -22.47 -0.34 2.10 16 3 C -0.01 -0.05 5.73 -106.94 -0.61 -0.66 16 4 C -0.08 -0.59 9.75 -39.16 -0.38 -0.98 16 5 C -0.07 -0.65 9.36 -39.65 -0.37 -1.02 16 6 C -0.09 -0.92 5.89 -104.46 -0.62 -1.54 16 7 C 0.11 1.39 5.43 36.00 0.20 1.59 16 8 O -0.36 -5.86 7.90 -40.70 -0.32 -6.18 16 9 C 0.52 10.38 7.89 34.51 0.27 10.65 16 10 O -0.55 -11.93 16.11 -19.27 -0.31 -12.24 16 11 C -0.28 -5.99 5.89 -104.75 -0.62 -6.60 16 12 C -0.04 -0.90 9.55 -39.59 -0.38 -1.28 16 13 C -0.18 -4.28 8.63 -39.27 -0.34 -4.62 16 14 C 0.13 3.13 5.58 -106.80 -0.60 2.54 16 15 C -0.43 -10.08 9.04 -37.75 -0.34 -10.42 16 16 H 0.09 1.96 7.91 -52.49 -0.42 1.54 16 17 C 0.07 1.59 5.14 -17.31 -0.09 1.50 16 18 N -0.76 -17.18 10.95 55.56 0.61 -16.57 16 19 Si 0.91 16.22 29.60 -169.99 -5.03 11.19 16 20 H -0.26 -4.52 7.11 56.52 0.40 -4.12 16 21 H -0.27 -4.67 7.11 56.52 0.40 -4.27 16 22 H -0.27 -4.75 7.11 56.52 0.40 -4.35 16 23 C -0.24 -5.41 9.73 -39.27 -0.38 -5.79 16 24 C -0.02 -0.37 9.52 -39.59 -0.38 -0.75 16 25 C 0.10 1.00 7.24 -39.48 -0.29 0.71 16 26 F -0.13 -1.34 16.79 2.25 0.04 -1.30 16 27 C -0.11 -0.83 9.73 -39.10 -0.38 -1.21 16 28 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 29 H 0.16 1.60 6.97 -52.48 -0.37 1.23 16 30 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 31 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 32 H 0.10 1.87 7.59 -52.49 -0.40 1.47 16 33 H 0.12 2.85 6.16 -52.48 -0.32 2.53 16 34 H 0.29 5.81 8.29 -40.82 -0.34 5.47 16 35 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 36 H 0.10 2.15 7.63 -52.49 -0.40 1.75 16 37 H 0.15 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 345.64 15.07 5.21 5.21 Total: -1.00 -26.61 345.64 -7.83 -34.44 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: -3.15 Total: 5.32 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -5.64 Total: -15.78 kcal Atomic # 7 Polarization: -22.03 SS G_CDS: 1.38 Total: -20.65 kcal Atomic # 8 Polarization: -17.79 SS G_CDS: -0.63 Total: -18.42 kcal Atomic # 9 Polarization: -1.34 SS G_CDS: 0.04 Total: -1.30 kcal Atomic # 14 Polarization: 16.22 SS G_CDS: -5.03 Total: 11.19 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.61 -7.83 -34.44 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758685702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.732 kcal (2) G-P(sol) polarization free energy of solvation -26.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds