Wall clock time and date at job start Tue Mar 31 2020 14:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39654 * 120.13334 * 145.56490 * 3 2 1 5 5 C 1.37936 * 119.89605 * 179.72462 * 4 3 2 6 6 C 1.38350 * 120.18001 * 0.50328 * 5 4 3 7 7 C 1.50693 * 119.86067 * 179.76997 * 6 5 4 8 8 O 1.45200 * 109.47169 * 359.72293 * 7 6 5 9 9 C 1.34775 * 116.99950 * 180.02562 * 8 7 6 10 10 O 1.21505 * 120.00131 * 0.02562 * 9 8 7 11 11 C 1.47508 * 120.00071 * 179.72035 * 9 8 7 12 12 C 1.40066 * 119.89924 * 0.02562 * 11 9 8 13 13 C 1.36306 * 120.10056 * 179.75324 * 12 11 9 14 14 C 1.40895 * 119.89553 * 0.54079 * 13 12 11 15 15 C 1.41091 * 120.09797 * 179.69407 * 14 13 12 16 16 H 1.08001 * 120.00385 * 204.66104 * 15 14 13 17 17 C 1.40249 * 119.99988 * 24.65675 * 15 14 13 18 18 N 1.30631 * 119.99887 * 17.87870 * 17 15 14 19 19 Si 1.86798 * 119.99967 * 197.87926 * 17 15 14 20 20 H 1.48495 * 109.47247 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47099 * 120.00351 * 19 17 15 22 22 H 1.48504 * 109.47190 * 239.99883 * 19 17 15 23 23 C 1.40898 * 119.80274 * 359.71376 * 14 13 12 24 24 C 1.36298 * 119.90137 * 359.97438 * 23 14 13 25 25 C 1.38563 * 120.27665 * 359.49134 * 6 5 4 26 26 F 1.35101 * 119.94816 * 180.27931 * 25 6 5 27 27 C 1.38197 * 120.09901 * 0.25511 * 25 6 5 28 28 H 1.08002 * 120.05438 * 359.96953 * 4 3 2 29 29 H 1.08004 * 119.91096 * 180.24900 * 5 4 3 30 30 H 1.09006 * 109.47116 * 239.72244 * 7 6 5 31 31 H 1.09001 * 109.47449 * 119.72568 * 7 6 5 32 32 H 1.08002 * 119.94684 * 0.02562 * 12 11 9 33 33 H 1.08004 * 120.04604 * 180.25223 * 13 12 11 34 34 H 0.97002 * 120.00269 * 179.97438 * 18 17 15 35 35 H 1.07997 * 120.04752 * 179.97438 * 23 14 13 36 36 H 1.07994 * 119.95121 * 179.97438 * 24 23 14 37 37 H 1.07998 * 120.09117 * 179.97438 * 27 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2686 0.9971 -0.6830 5 6 4.6480 0.9963 -0.6750 6 6 5.3390 0.0052 -0.0010 7 6 6.8459 0.0083 -0.0014 8 8 7.3274 1.1380 -0.7761 9 6 8.6632 1.2860 -0.8768 10 8 9.4052 0.4925 -0.3325 11 6 9.2246 2.4074 -1.6534 12 6 8.3674 3.3175 -2.2849 13 6 8.8817 4.3582 -2.9994 14 6 10.2779 4.5110 -3.1116 15 6 10.8148 5.5830 -3.8554 16 1 11.8048 5.5035 -4.2796 17 6 10.0628 6.7517 -4.0442 18 7 9.0414 7.0033 -3.2697 19 14 10.5218 7.9484 -5.4030 20 1 11.7093 7.4366 -6.1332 21 1 9.3827 8.0879 -6.3454 22 1 10.8387 9.2726 -4.8102 23 6 11.1362 3.5900 -2.4790 24 6 10.6132 2.5560 -1.7613 25 6 4.6513 -0.9870 0.6791 26 9 5.3328 -1.9484 1.3397 27 6 3.2693 -0.9943 0.6830 28 1 2.7314 1.7695 -1.2133 29 1 5.1901 1.7691 -1.1998 30 1 7.2111 -0.9183 -0.4445 31 1 7.2094 0.0889 1.0231 32 1 7.2974 3.1971 -2.2019 33 1 8.2200 5.0618 -3.4826 34 1 8.5215 7.8118 -3.3999 35 1 12.2070 3.7031 -2.5628 36 1 11.2704 1.8493 -1.2765 37 1 2.7334 -1.7679 1.2129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758685702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:26 Heat of formation + Delta-G solvation = -74.597083 kcal Electronic energy + Delta-G solvation = -24750.603605 eV Core-core repulsion = 20757.552530 eV Total energy + Delta-G solvation = -3993.051075 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.03718 -41.37433 -40.37878 -39.21767 -37.78487 -37.15257 -35.71669 -33.56108 -32.10991 -31.80497 -31.32951 -28.78083 -27.59197 -24.64981 -23.80159 -23.38102 -22.76837 -21.60558 -20.35222 -19.36980 -18.64166 -18.18116 -17.49745 -17.47759 -17.16461 -16.96433 -16.66852 -16.49123 -15.73439 -15.20252 -15.11527 -15.04884 -14.87019 -14.66820 -14.65687 -14.38487 -14.01918 -13.89561 -13.71693 -13.48613 -13.24168 -13.01304 -12.85727 -12.65385 -12.64493 -12.40137 -12.35995 -11.86165 -11.79051 -11.38857 -11.23556 -11.10810 -10.10198 -9.81891 -9.58271 -9.48766 -8.82280 -6.51726 -0.53581 0.05816 0.27658 1.18399 1.37827 1.43698 1.49869 1.57940 1.70287 1.72755 1.91377 2.17390 2.56818 2.63785 2.70907 3.18328 3.40557 3.66845 3.69763 3.90432 4.02694 4.15790 4.17961 4.37954 4.42645 4.47710 4.55546 4.76034 4.94076 4.97067 5.02071 5.06760 5.16039 5.20336 5.27390 5.44628 5.59405 5.61554 5.85530 5.95274 6.00342 6.19698 6.32855 6.53397 6.74342 6.86209 7.02132 8.12292 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.002556 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.712571 B =10953.870810 C =12680.759143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.283 3.717 3 C -0.002 4.002 4 C -0.060 4.060 5 C -0.075 4.075 6 C -0.095 4.095 7 C 0.102 3.898 8 O -0.349 6.349 9 C 0.524 3.476 10 O -0.568 6.568 11 C -0.288 4.288 12 C -0.035 4.035 13 C -0.204 4.204 14 C 0.104 3.896 15 C -0.459 4.459 16 H 0.090 0.910 17 C 0.038 3.962 18 N -0.788 5.788 19 Si 0.987 3.013 20 H -0.256 1.256 21 H -0.260 1.260 22 H -0.264 1.264 23 C -0.251 4.251 24 C -0.024 4.024 25 C 0.100 3.900 26 F -0.136 7.136 27 C -0.090 4.090 28 H 0.166 0.834 29 H 0.155 0.845 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.116 0.884 34 H 0.299 0.701 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.908 -7.206 2.875 12.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.125 5.125 2 C -0.032 4.032 3 C -0.005 4.005 4 C -0.080 4.080 5 C -0.093 4.093 6 C -0.097 4.097 7 C 0.029 3.971 8 O -0.266 6.266 9 C 0.377 3.623 10 O -0.463 6.463 11 C -0.290 4.290 12 C -0.054 4.054 13 C -0.223 4.223 14 C 0.101 3.899 15 C -0.486 4.486 16 H 0.108 0.892 17 C -0.183 4.183 18 N -0.411 5.411 19 Si 0.807 3.193 20 H -0.179 1.179 21 H -0.185 1.185 22 H -0.189 1.189 23 C -0.271 4.271 24 C -0.043 4.043 25 C 0.080 3.920 26 F -0.114 7.114 27 C -0.111 4.111 28 H 0.183 0.817 29 H 0.172 0.828 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.145 0.855 33 H 0.133 0.867 34 H 0.111 0.889 35 H 0.128 0.872 36 H 0.128 0.872 37 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -11.664 -7.316 3.143 14.123 hybrid contribution 1.010 0.134 -0.031 1.019 sum -10.654 -7.183 3.112 13.220 Atomic orbital electron populations 1.81319 1.13086 1.08779 1.09352 1.25500 0.92272 0.92747 0.92717 1.15644 0.83707 0.98379 1.02819 1.21495 0.93425 0.97023 0.96095 1.21013 0.93692 0.97515 0.97081 1.19895 0.93999 0.96344 0.99433 1.21608 0.90457 0.88505 0.96577 1.86474 1.24218 1.48166 1.67724 1.21268 0.79587 0.84048 0.77421 1.90708 1.60714 1.46047 1.48861 1.18402 0.93659 1.01444 1.15539 1.20817 0.98702 0.92281 0.93570 1.21039 0.95312 0.99861 1.06055 1.18210 0.92756 0.91302 0.87676 1.20245 1.02833 0.98466 1.27035 0.89221 1.26960 0.93337 1.00403 0.97574 1.69752 1.14449 1.25165 1.31727 0.85060 0.79903 0.76899 0.77438 1.17932 1.18457 1.18888 1.20845 0.98771 1.00555 1.06888 1.20515 0.93322 0.95557 0.94908 1.17030 0.89800 0.88126 0.97001 1.91539 1.79936 1.61380 1.78548 1.21132 0.91178 0.99410 0.99338 0.81668 0.82753 0.89419 0.89549 0.85463 0.86661 0.88915 0.87196 0.87213 0.81297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -9.85 18.54 19.00 0.35 -9.50 16 2 C 0.28 4.69 15.33 88.33 1.35 6.05 16 3 C 0.00 -0.03 5.73 -21.37 -0.12 -0.15 16 4 C -0.06 -0.78 9.75 22.54 0.22 -0.56 16 5 C -0.08 -1.29 9.36 22.22 0.21 -1.08 16 6 C -0.09 -1.87 5.89 -19.76 -0.12 -1.99 16 7 C 0.10 2.62 5.43 71.23 0.39 3.00 16 8 O -0.35 -11.11 7.90 -56.86 -0.45 -11.56 16 9 C 0.52 20.81 7.89 70.27 0.55 21.36 16 10 O -0.57 -24.54 16.11 19.82 0.32 -24.22 16 11 C -0.29 -12.48 5.89 -19.95 -0.12 -12.60 16 12 C -0.04 -1.48 9.55 22.26 0.21 -1.27 16 13 C -0.20 -9.56 8.63 22.47 0.19 -9.36 16 14 C 0.10 5.09 5.58 -21.28 -0.12 4.97 16 15 C -0.46 -21.78 9.04 23.46 0.21 -21.57 16 16 H 0.09 4.06 7.91 -2.91 -0.02 4.03 16 17 C 0.04 1.64 5.14 85.36 0.44 2.08 16 18 N -0.79 -35.55 10.95 21.88 0.24 -35.31 16 19 Si 0.99 32.61 29.60 68.60 2.03 34.64 16 20 H -0.26 -8.37 7.11 99.48 0.71 -7.66 16 21 H -0.26 -8.24 7.11 99.48 0.71 -7.54 16 22 H -0.26 -8.42 7.11 99.48 0.71 -7.72 16 23 C -0.25 -11.64 9.73 22.47 0.22 -11.42 16 24 C -0.02 -1.09 9.52 22.26 0.21 -0.88 16 25 C 0.10 1.71 7.24 22.34 0.16 1.87 16 26 F -0.14 -2.62 16.79 44.97 0.75 -1.86 16 27 C -0.09 -1.16 9.73 22.58 0.22 -0.94 16 28 H 0.17 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.15 2.83 6.97 -2.91 -0.02 2.81 16 30 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 31 H 0.09 2.23 8.14 -2.39 -0.02 2.21 16 32 H 0.13 4.57 7.59 -2.91 -0.02 4.55 16 33 H 0.12 5.48 6.16 -2.91 -0.02 5.47 16 34 H 0.30 11.89 8.29 -92.71 -0.77 11.13 16 35 H 0.11 4.72 8.06 -2.91 -0.02 4.70 16 36 H 0.11 4.65 7.63 -2.91 -0.02 4.63 16 37 H 0.17 1.45 8.06 -2.91 -0.02 1.42 16 Total: -1.00 -57.12 345.64 8.50 -48.62 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 1.14 Total: 21.67 kcal Atomic # 6 Polarization: -26.59 SS G_CDS: 4.12 Total: -22.47 kcal Atomic # 7 Polarization: -45.40 SS G_CDS: 0.59 Total: -44.81 kcal Atomic # 8 Polarization: -35.66 SS G_CDS: -0.13 Total: -35.79 kcal Atomic # 9 Polarization: -2.62 SS G_CDS: 0.75 Total: -1.86 kcal Atomic # 14 Polarization: 32.61 SS G_CDS: 2.03 Total: 34.64 kcal Total: -57.12 8.50 -48.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758685702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.980 kcal (2) G-P(sol) polarization free energy of solvation -57.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.099 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds