Wall clock time and date at job start Tue Mar 31 2020 14:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39689 * 120.17341 * 14.87728 * 3 2 1 5 5 C 1.37863 * 119.87316 * 179.97438 * 4 3 2 6 6 C 1.50693 * 119.89353 * 180.02562 * 5 4 3 7 7 O 1.45201 * 109.47442 * 89.99279 * 6 5 4 8 8 C 1.34805 * 117.00112 * 179.97438 * 7 6 5 9 9 O 1.21528 * 120.00035 * 0.02562 * 8 7 6 10 10 C 1.47286 * 119.99931 * 180.02562 * 8 7 6 11 11 C 1.39287 * 120.29060 * 356.63819 * 10 8 7 12 12 C 1.38203 * 120.08857 * 180.27521 * 11 10 8 13 13 C 1.38835 * 120.67877 * 359.73771 * 12 11 10 14 14 C 1.37593 * 120.58819 * 359.97438 * 13 12 11 15 15 C 1.40709 * 119.88255 * 0.02562 * 14 13 12 16 16 C 1.40864 * 120.33081 * 179.97438 * 15 14 13 17 17 H 1.08001 * 120.00154 * 215.85139 * 16 15 14 18 18 C 1.40298 * 120.00223 * 35.84475 * 16 15 14 19 19 N 1.30618 * 119.99899 * 190.87325 * 18 16 15 20 20 Si 1.86800 * 119.99896 * 10.86757 * 18 16 15 21 21 H 1.48496 * 109.47409 * 267.47577 * 20 18 16 22 22 H 1.48501 * 109.47064 * 27.47797 * 20 18 16 23 23 H 1.48507 * 109.47023 * 147.47416 * 20 18 16 24 24 C 1.38447 * 120.21716 * 0.26783 * 5 4 3 25 25 C 1.38236 * 120.34779 * 359.45467 * 24 5 4 26 26 C 1.38281 * 120.11848 * 0.54885 * 25 24 5 27 27 F 1.35102 * 120.10633 * 179.70447 * 26 25 24 28 28 H 1.07997 * 120.06266 * 359.97438 * 4 3 2 29 29 H 1.09003 * 109.46928 * 329.99578 * 6 5 4 30 30 H 1.08997 * 109.47353 * 210.00185 * 6 5 4 31 31 H 1.08002 * 119.95920 * 0.02562 * 11 10 8 32 32 H 1.08001 * 119.66200 * 179.76055 * 12 11 10 33 33 H 1.08005 * 119.70778 * 180.02562 * 13 12 11 34 34 H 1.07994 * 120.06115 * 180.02562 * 14 13 12 35 35 H 0.97002 * 119.99756 * 179.97438 * 19 18 16 36 36 H 1.08004 * 119.82595 * 179.72963 * 24 5 4 37 37 H 1.07997 * 119.93576 * 180.24868 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2707 -1.1662 -0.3101 5 6 4.6493 -1.1585 -0.3087 6 6 5.4077 -2.4168 -0.6437 7 8 5.6505 -2.4693 -2.0743 8 6 6.3235 -3.5397 -2.5420 9 8 6.6967 -4.4054 -1.7751 10 6 6.6065 -3.6598 -3.9824 11 6 6.1217 -2.7073 -4.8755 12 6 6.3850 -2.8272 -6.2269 13 6 7.1367 -3.8895 -6.7106 14 6 7.6343 -4.8432 -5.8526 15 6 7.3808 -4.7447 -4.4720 16 6 7.8852 -5.7160 -3.5852 17 1 7.3043 -6.0160 -2.7256 18 6 9.1422 -6.2938 -3.8186 19 7 9.5198 -7.3368 -3.1288 20 14 10.2757 -5.5716 -5.1159 21 1 10.0526 -6.2652 -6.4098 22 1 9.9875 -4.1235 -5.2743 23 1 11.6884 -5.7520 -4.6947 24 6 5.3393 0.0003 0.0043 25 6 4.6531 1.1616 0.3069 26 6 3.2704 1.1698 0.3099 27 9 2.6000 2.3034 0.6116 28 1 2.7350 -2.0726 -0.5504 29 1 4.8218 -3.2852 -0.3425 30 1 6.3599 -2.4193 -0.1132 31 1 5.5358 -1.8760 -4.5120 32 1 6.0024 -2.0867 -6.9137 33 1 7.3333 -3.9677 -7.7697 34 1 8.2183 -5.6657 -6.2380 35 1 10.3887 -7.7365 -3.2904 36 1 6.4193 -0.0019 0.0077 37 1 5.1981 2.0627 0.5462 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000758932133.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:10 Heat of formation + Delta-G solvation = -67.529349 kcal Electronic energy + Delta-G solvation = -25218.798137 eV Core-core repulsion = 21226.053541 eV Total energy + Delta-G solvation = -3992.744595 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.16326 -41.29979 -40.39555 -39.16418 -37.77085 -37.03204 -35.54781 -33.16880 -32.61135 -32.35429 -31.80632 -27.82960 -27.00202 -25.30529 -24.39906 -23.29799 -22.91094 -21.38504 -19.90203 -19.42430 -18.60250 -18.43424 -17.98273 -17.61422 -17.02854 -16.90237 -16.79015 -15.90494 -15.73974 -15.48030 -15.25865 -15.00637 -14.93444 -14.77955 -14.45275 -14.40819 -14.26596 -13.95022 -13.85544 -13.57958 -13.27558 -13.16950 -12.72533 -12.65734 -12.53031 -12.33186 -12.22439 -12.05172 -11.62043 -11.50182 -11.09296 -10.72740 -10.22651 -9.87675 -9.59187 -9.46403 -8.87247 -6.54625 -0.52786 -0.06410 0.21793 0.85066 1.27689 1.39503 1.39736 1.49746 1.59570 1.99110 2.08245 2.12101 2.57477 2.66243 2.67460 2.92675 3.48573 3.54430 3.61465 3.91128 4.03740 4.28381 4.30897 4.33649 4.44419 4.54705 4.59506 4.74976 4.79440 4.83987 4.87751 4.98718 4.99074 5.28915 5.30825 5.40286 5.57154 5.60177 5.70141 5.88192 5.95023 6.23456 6.25185 6.43449 6.69466 6.76327 7.26320 8.16261 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.019697 B = 0.002778 C = 0.002665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.169679 B =10075.903388 C =10505.245279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.448 5.448 2 C 0.273 3.727 3 C -0.075 4.075 4 C -0.014 4.014 5 C -0.103 4.103 6 C 0.102 3.898 7 O -0.355 6.355 8 C 0.505 3.495 9 O -0.539 6.539 10 C -0.259 4.259 11 C -0.020 4.020 12 C -0.236 4.236 13 C -0.052 4.052 14 C -0.248 4.248 15 C 0.105 3.895 16 C -0.447 4.447 17 H 0.078 0.922 18 C 0.040 3.960 19 N -0.837 5.837 20 Si 0.964 3.036 21 H -0.247 1.247 22 H -0.246 1.246 23 H -0.279 1.279 24 C -0.023 4.023 25 C -0.139 4.139 26 C 0.151 3.849 27 F -0.133 7.133 28 H 0.151 0.849 29 H 0.076 0.924 30 H 0.085 0.915 31 H 0.138 0.862 32 H 0.143 0.857 33 H 0.139 0.861 34 H 0.107 0.893 35 H 0.296 0.704 36 H 0.167 0.833 37 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.770 16.134 2.645 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.124 5.124 2 C -0.042 4.042 3 C -0.079 4.079 4 C -0.034 4.034 5 C -0.103 4.103 6 C 0.028 3.972 7 O -0.274 6.274 8 C 0.355 3.645 9 O -0.432 6.432 10 C -0.262 4.262 11 C -0.038 4.038 12 C -0.255 4.255 13 C -0.071 4.071 14 C -0.266 4.266 15 C 0.101 3.899 16 C -0.475 4.475 17 H 0.096 0.904 18 C -0.176 4.176 19 N -0.463 5.463 20 Si 0.786 3.214 21 H -0.172 1.172 22 H -0.170 1.170 23 H -0.205 1.205 24 C -0.042 4.042 25 C -0.157 4.157 26 C 0.129 3.871 27 F -0.112 7.112 28 H 0.169 0.831 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.156 0.844 32 H 0.161 0.839 33 H 0.157 0.843 34 H 0.125 0.875 35 H 0.107 0.893 36 H 0.185 0.815 37 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -5.325 15.710 3.047 16.866 hybrid contribution 0.610 -0.475 0.244 0.811 sum -4.715 15.235 3.292 16.284 Atomic orbital electron populations 1.81263 1.13006 1.07960 1.10125 1.25578 0.92578 0.93173 0.92846 1.15886 0.83944 0.95469 1.12639 1.21061 0.93403 0.96514 0.92466 1.19381 0.92734 0.95242 1.02978 1.21800 1.00625 0.95990 0.78757 1.86584 1.69705 1.44521 1.26566 1.21310 0.74706 0.78668 0.89801 1.90806 1.51167 1.41582 1.59619 1.19034 1.16852 1.01462 0.88863 1.21308 0.93950 0.95321 0.93229 1.20966 1.07535 1.01910 0.95098 1.21306 0.93668 0.92533 0.99555 1.21238 1.09749 1.02890 0.92772 1.17749 0.89998 0.89528 0.92597 1.20026 1.02661 1.15413 1.09390 0.90380 1.27119 1.00132 0.92749 0.97564 1.69603 1.21921 1.17355 1.37397 0.85521 0.76031 0.81461 0.78352 1.17209 1.16982 1.20536 1.21526 1.02351 0.89608 0.90698 1.21361 0.90313 1.01404 1.02619 1.17860 0.90887 0.80474 0.97851 1.91550 1.80897 1.48656 1.90069 0.83137 0.90555 0.89623 0.84440 0.83943 0.84312 0.87543 0.89295 0.81534 0.80126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -12.19 18.54 19.00 0.35 -11.84 16 2 C 0.27 6.12 14.98 88.33 1.32 7.45 16 3 C -0.07 -1.31 5.74 -21.29 -0.12 -1.44 16 4 C -0.01 -0.24 9.40 22.53 0.21 -0.02 16 5 C -0.10 -1.79 5.51 -19.91 -0.11 -1.90 16 6 C 0.10 2.53 5.59 71.23 0.40 2.92 16 7 O -0.36 -11.70 9.46 -57.17 -0.54 -12.24 16 8 C 0.50 21.94 7.85 70.20 0.55 22.50 16 9 O -0.54 -27.44 13.32 19.74 0.26 -27.18 16 10 C -0.26 -11.56 5.92 -19.71 -0.12 -11.68 16 11 C -0.02 -0.72 9.60 22.51 0.22 -0.50 16 12 C -0.24 -7.70 10.03 22.40 0.22 -7.47 16 13 C -0.05 -1.84 10.01 22.26 0.22 -1.62 16 14 C -0.25 -10.71 7.02 22.72 0.16 -10.56 16 15 C 0.10 5.19 5.04 -21.10 -0.11 5.08 16 16 C -0.45 -25.09 8.32 23.41 0.19 -24.90 16 17 H 0.08 4.97 5.95 -2.91 -0.02 4.95 16 18 C 0.04 2.13 5.47 85.37 0.47 2.60 16 19 N -0.84 -45.72 13.92 21.89 0.30 -45.41 16 20 Si 0.96 40.61 24.51 68.60 1.68 42.29 16 21 H -0.25 -9.52 6.74 99.48 0.67 -8.85 16 22 H -0.25 -10.42 6.75 99.48 0.67 -9.75 16 23 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 24 C -0.02 -0.29 9.69 22.32 0.22 -0.07 16 25 C -0.14 -1.44 10.01 22.28 0.22 -1.21 16 26 C 0.15 2.28 7.28 22.67 0.17 2.45 16 27 F -0.13 -2.33 16.81 44.97 0.76 -1.58 16 28 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 29 H 0.08 1.94 8.08 -2.39 -0.02 1.92 16 30 H 0.09 2.07 8.08 -2.39 -0.02 2.05 16 31 H 0.14 4.11 7.61 -2.91 -0.02 4.09 16 32 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 33 H 0.14 3.79 8.06 -2.91 -0.02 3.77 16 34 H 0.11 4.55 4.96 -2.91 -0.01 4.53 16 35 H 0.30 14.38 8.29 -92.71 -0.77 13.61 16 36 H 0.17 1.42 8.06 -2.91 -0.02 1.40 16 37 H 0.18 0.80 8.06 -2.91 -0.02 0.78 16 Total: -1.00 -68.42 337.87 8.01 -60.42 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.07 Total: 13.92 kcal Atomic # 6 Polarization: -22.49 SS G_CDS: 4.12 Total: -18.37 kcal Atomic # 7 Polarization: -57.91 SS G_CDS: 0.66 Total: -57.25 kcal Atomic # 8 Polarization: -39.15 SS G_CDS: -0.28 Total: -39.42 kcal Atomic # 9 Polarization: -2.33 SS G_CDS: 0.76 Total: -1.58 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 1.68 Total: 42.29 kcal Total: -68.42 8.01 -60.42 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000758932133.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.114 kcal (2) G-P(sol) polarization free energy of solvation -68.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds