Wall clock time and date at job start Tue Mar 31 2020 13:56:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86793 * 120.00227 * 2 1 4 4 H 1.48502 * 109.47016 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47132 * 299.99480 * 3 2 1 6 6 H 1.48498 * 109.47160 * 59.99650 * 3 2 1 7 7 C 1.38989 * 119.99612 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00390 * 180.02562 * 7 2 1 9 9 N 1.37312 * 120.00050 * 0.02562 * 7 2 1 10 10 C 1.36501 * 126.06607 * 179.97438 * 9 7 2 11 11 C 1.35713 * 107.50428 * 180.02562 * 10 9 7 12 12 N 1.40503 * 126.08598 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99735 * 179.97438 * 12 11 10 14 14 O 1.21740 * 120.00157 * 359.97438 * 13 12 11 15 15 C 1.43198 * 119.99822 * 180.02562 * 13 12 11 16 16 C 9.38650 * 82.77184 * 180.02562 * 2 1 3 17 17 C 9.69184 * 110.58672 * 180.02562 * 7 1 2 18 18 C 1.39949 * 120.11032 * 101.49480 * 17 16 15 19 19 C 1.37724 * 119.97774 * 179.77572 * 18 17 16 20 20 C 1.38888 * 120.24925 * 0.47759 * 19 18 17 21 21 C 1.39579 * 120.10039 * 359.51893 * 20 19 18 22 22 C 1.38091 * 120.00279 * 0.24242 * 21 20 19 23 23 O 1.36537 * 108.59490 * 180.24013 * 21 20 19 24 24 C 1.43974 * 105.45232 * 342.67982 * 23 21 20 25 25 O 1.36405 * 131.32789 * 179.82779 * 20 19 18 26 26 C 1.40674 * 107.82668 * 0.22815 * 11 10 9 27 27 N 1.30909 * 108.38390 * 359.61545 * 26 11 10 28 28 H 0.97003 * 119.99620 * 0.02562 * 1 2 3 29 29 H 1.07993 * 126.24925 * 0.02562 * 10 9 7 30 30 H 0.96997 * 119.99835 * 0.02562 * 12 11 10 31 31 H 1.07996 * 120.01279 * 0.03285 * 18 17 16 32 32 H 1.08004 * 119.87733 * 180.27783 * 19 18 17 33 33 H 1.07998 * 120.05592 * 180.02562 * 22 21 20 34 34 H 1.09003 * 110.56565 * 268.62846 * 24 23 21 35 35 H 1.09003 * 110.56197 * 145.78372 * 24 23 21 36 36 H 1.07998 * 125.80927 * 179.73293 * 26 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6176 0.0000 4 1 3.7070 1.3462 0.0006 5 1 1.8883 2.3963 -1.2126 6 1 1.8882 2.3964 1.2124 7 6 2.0078 -1.2037 0.0005 8 1 3.0878 -1.2039 0.0010 9 7 1.3212 -2.3928 0.0005 10 6 1.8749 -3.6405 0.0005 11 6 0.8574 -4.5386 0.0000 12 7 0.9884 -5.9375 -0.0007 13 6 -0.1110 -6.7172 -0.0008 14 8 -1.2174 -6.2095 0.0003 15 6 0.0225 -8.1430 -0.0009 16 6 0.1319 -9.3119 -0.0042 17 6 0.2654 -10.7377 0.0007 18 6 0.5714 -11.4182 -1.1832 19 6 0.7037 -12.7891 -1.1744 20 6 0.5248 -13.5017 0.0042 21 6 0.2195 -12.8299 1.1889 22 6 0.0899 -11.4551 1.1895 23 8 0.1009 -13.7485 2.1922 24 6 -0.0685 -15.0170 1.5327 25 8 0.5966 -14.8380 0.2686 26 6 -0.3517 -3.8196 -0.0057 27 7 -0.0716 -2.5408 -0.0001 28 1 -0.4850 0.8401 -0.0004 29 1 2.9299 -3.8709 0.0009 30 1 1.8700 -6.3421 -0.0005 31 1 0.7079 -10.8683 -2.1026 32 1 0.9443 -13.3122 -2.0882 33 1 -0.1459 -10.9344 2.1058 34 1 -1.1264 -15.2319 1.3818 35 1 0.4069 -15.8130 2.1060 36 1 -1.3424 -4.2494 -0.0116 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762168507.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:56:11 Heat of formation + Delta-G solvation = 77.802739 kcal Electronic energy + Delta-G solvation = -24059.390189 eV Core-core repulsion = 20092.867627 eV Total energy + Delta-G solvation = -3966.522562 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.089 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.60279 -39.97255 -38.67353 -38.44968 -36.76028 -34.30911 -33.88185 -33.15411 -31.09141 -30.41136 -30.08047 -27.91072 -26.39541 -25.23685 -24.13811 -23.36174 -22.52297 -20.94797 -19.61155 -19.26444 -18.38379 -18.03599 -17.78144 -17.30104 -16.85595 -15.59305 -15.47829 -15.35176 -14.94664 -14.81039 -14.51171 -14.34485 -14.28306 -13.71105 -13.59425 -13.45012 -13.23870 -13.16816 -12.95571 -12.15155 -11.77646 -11.72210 -11.50332 -11.31414 -11.00694 -10.75265 -10.71265 -10.52223 -10.23929 -9.63142 -9.28333 -9.22531 -8.86488 -8.38720 -8.10878 -6.77330 -6.59337 -4.26749 0.27677 0.74900 1.56189 2.18113 2.46154 2.91132 2.94150 3.03535 3.09940 3.20478 3.39980 3.46417 3.79345 3.80518 3.96266 4.19078 4.24104 4.39844 4.44139 4.59955 4.68945 4.75822 4.79074 4.99035 5.04360 5.21569 5.57016 5.58138 5.72577 5.84511 5.92236 6.20521 6.39785 6.61449 6.80831 6.90200 7.01097 7.08509 7.17888 7.81546 8.06195 8.20105 8.53203 8.72742 9.32753 9.61605 10.36575 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.045070 B = 0.001681 C = 0.001672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.106037 B =16654.080767 C =16738.917571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.140 5.140 10 C -0.079 4.079 11 C -0.065 4.065 12 N -0.603 5.603 13 C 0.606 3.394 14 O -0.516 6.516 15 C -0.150 4.150 16 C -0.073 4.073 17 C 0.023 3.977 18 C -0.077 4.077 19 C -0.099 4.099 20 C 0.043 3.957 21 C 0.032 3.968 22 C -0.072 4.072 23 O -0.306 6.306 24 C 0.213 3.787 25 O -0.307 6.307 26 C -0.028 4.028 27 N -0.260 5.260 28 H 0.275 0.725 29 H 0.148 0.852 30 H 0.402 0.598 31 H 0.148 0.852 32 H 0.144 0.856 33 H 0.144 0.856 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.592 -25.757 0.023 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.172 4.172 3 Si 0.760 3.240 4 H -0.187 1.187 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.454 4.454 8 H 0.136 0.864 9 N 0.093 4.907 10 C -0.230 4.230 11 C -0.171 4.171 12 N -0.243 5.243 13 C 0.392 3.608 14 O -0.394 6.394 15 C -0.154 4.154 16 C -0.076 4.076 17 C 0.023 3.977 18 C -0.095 4.095 19 C -0.117 4.117 20 C -0.002 4.002 21 C -0.013 4.013 22 C -0.091 4.091 23 O -0.222 6.222 24 C 0.101 3.899 25 O -0.223 6.223 26 C -0.204 4.204 27 N -0.091 5.091 28 H 0.086 0.914 29 H 0.165 0.835 30 H 0.236 0.764 31 H 0.166 0.834 32 H 0.161 0.839 33 H 0.162 0.838 34 H 0.104 0.896 35 H 0.151 0.849 36 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 2.226 -24.186 0.159 24.288 hybrid contribution 1.180 -0.719 0.176 1.393 sum 3.406 -24.905 0.335 25.139 Atomic orbital electron populations 1.70225 1.06158 1.28008 1.35008 1.25664 0.95728 1.00350 0.95431 0.85746 0.79631 0.80156 0.78512 1.18651 1.19872 1.19883 1.19954 0.91744 0.80476 1.53257 0.86433 1.44589 1.04089 1.03350 1.38686 1.21257 0.96862 0.85246 1.19683 1.17216 0.94575 0.80550 1.24748 1.42273 1.07846 1.04709 1.69518 1.14487 0.84910 0.81236 0.80158 1.90808 1.25464 1.73036 1.50044 1.20888 1.00255 0.92490 1.01734 1.18777 1.00364 0.90464 0.97955 1.15549 1.02975 0.86141 0.93081 1.21078 0.97979 0.92601 0.97811 1.19976 1.03427 0.92927 0.95406 1.20061 1.02108 0.82922 0.95116 1.19505 1.04085 0.91780 0.85887 1.20081 1.00876 0.89188 0.98936 1.87411 1.89557 1.16239 1.29022 1.25680 0.98670 0.87032 0.78521 1.87350 1.74731 1.21308 1.38901 1.24159 0.98022 0.90746 1.07459 1.78280 0.90085 1.14975 1.25732 0.91413 0.83457 0.76432 0.83434 0.83859 0.83814 0.89579 0.84912 0.80569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.25 11.81 55.50 0.66 -20.59 16 2 C 0.05 1.17 5.50 -17.50 -0.10 1.07 16 3 Si 0.94 18.67 29.55 -169.99 -5.02 13.65 16 4 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 5 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 6 H -0.27 -5.43 7.11 56.52 0.40 -5.03 16 7 C -0.32 -8.40 10.25 -14.82 -0.15 -8.55 16 8 H 0.12 2.73 7.83 -52.49 -0.41 2.32 16 9 N -0.14 -3.80 3.74 -11.40 -0.04 -3.84 16 10 C -0.08 -1.83 11.50 -16.38 -0.19 -2.02 16 11 C -0.07 -1.49 6.90 -83.86 -0.58 -2.07 16 12 N -0.60 -10.83 5.45 -12.17 -0.07 -10.90 16 13 C 0.61 11.20 7.62 -14.33 -0.11 11.09 16 14 O -0.52 -11.50 14.24 5.15 0.07 -11.43 16 15 C -0.15 -2.24 13.61 -38.84 -0.53 -2.76 16 16 C -0.07 -0.91 13.24 -38.84 -0.51 -1.43 16 17 C 0.02 0.23 5.75 -106.69 -0.61 -0.38 16 18 C -0.08 -0.62 9.75 -39.13 -0.38 -1.00 16 19 C -0.10 -0.74 10.04 -39.53 -0.40 -1.14 16 20 C 0.04 0.39 7.16 -38.84 -0.28 0.11 16 21 C 0.03 0.31 7.13 -39.14 -0.28 0.03 16 22 C -0.07 -0.71 9.78 -38.99 -0.38 -1.09 16 23 O -0.31 -2.81 11.41 -45.81 -0.52 -3.34 16 24 C 0.21 1.24 8.88 101.05 0.90 2.14 16 25 O -0.31 -2.60 11.39 -45.37 -0.52 -3.11 16 26 C -0.03 -0.74 10.85 -17.03 -0.18 -0.92 16 27 N -0.26 -7.50 10.39 30.81 0.32 -7.18 16 28 H 0.28 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.15 2.80 8.06 -52.49 -0.42 2.38 16 30 H 0.40 5.57 8.79 -40.82 -0.36 5.21 16 31 H 0.15 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.14 0.74 8.06 -52.48 -0.42 0.32 16 33 H 0.14 1.30 8.06 -52.49 -0.42 0.88 16 34 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.13 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.18 4.56 5.91 -52.49 -0.31 4.25 16 LS Contribution 336.62 15.07 5.07 5.07 Total: -1.00 -34.29 336.62 -6.59 -40.88 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: -2.75 Total: 7.71 kcal Atomic # 6 Polarization: -3.14 SS G_CDS: -3.78 Total: -6.92 kcal Atomic # 7 Polarization: -43.38 SS G_CDS: 0.87 Total: -42.51 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: -0.97 Total: -17.88 kcal Atomic # 14 Polarization: 18.67 SS G_CDS: -5.02 Total: 13.65 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -34.29 -6.59 -40.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762168507.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.684 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds