Wall clock time and date at job start Tue Mar 31 2020 14:35:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39601 * 120.23200 * 248.34672 * 3 2 1 5 5 F 1.35101 * 120.04134 * 0.02562 * 4 3 2 6 6 C 1.38443 * 119.92187 * 179.76934 * 4 3 2 7 7 C 1.38335 * 120.40714 * 0.49311 * 6 4 3 8 8 C 1.38169 * 120.47764 * 359.78815 * 7 6 4 9 9 C 1.39297 * 120.06427 * 359.95248 * 8 7 6 10 10 C 1.47683 * 120.20391 * 180.02562 * 9 8 7 11 11 O 1.21468 * 120.00004 * 180.02562 * 10 9 8 12 12 O 1.34727 * 119.99976 * 0.02562 * 10 9 8 13 13 C 1.45203 * 117.00146 * 179.97438 * 12 10 9 14 14 C 1.50693 * 109.47243 * 179.97438 * 13 12 10 15 15 C 1.38638 * 119.74916 * 269.73532 * 14 13 12 16 16 C 1.37627 * 120.24607 * 179.72402 * 15 14 13 17 17 C 1.40708 * 119.74271 * 0.56442 * 16 15 14 18 18 C 1.41400 * 120.24371 * 179.68613 * 17 16 15 19 19 H 1.07996 * 120.00315 * 204.40435 * 18 17 16 20 20 C 1.39946 * 119.99944 * 24.40537 * 18 17 16 21 21 N 1.30820 * 119.99957 * 17.84759 * 20 18 17 22 22 Si 1.86797 * 119.99851 * 197.85036 * 20 18 17 23 23 H 1.48499 * 109.47041 * 90.00235 * 22 20 18 24 24 H 1.48502 * 109.46833 * 209.99405 * 22 20 18 25 25 H 1.48499 * 109.47240 * 329.99568 * 22 20 18 26 26 C 1.40717 * 119.51510 * 359.70199 * 17 16 15 27 27 C 1.37620 * 119.74348 * 0.02562 * 26 17 16 28 28 H 1.07997 * 119.79508 * 180.27831 * 6 4 3 29 29 H 1.07998 * 119.75680 * 179.76133 * 7 6 4 30 30 H 1.08002 * 119.96358 * 179.97438 * 8 7 6 31 31 H 1.09000 * 109.47172 * 300.00450 * 13 12 10 32 32 H 1.09000 * 109.46674 * 59.99759 * 13 12 10 33 33 H 1.08000 * 119.87772 * 359.96932 * 15 14 13 34 34 H 1.08003 * 120.12527 * 180.27281 * 16 15 14 35 35 H 0.97003 * 120.00339 * 180.02562 * 21 20 18 36 36 H 1.08004 * 120.12647 * 179.97438 * 26 17 16 37 37 H 1.07994 * 119.87268 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2707 0.4460 1.1210 5 9 2.6006 0.8781 2.2116 6 6 4.6551 0.4394 1.1158 7 6 5.3490 0.0031 0.0015 8 6 4.6704 -0.4358 -1.1192 9 6 3.2776 -0.4426 -1.1335 10 6 2.5491 -0.9115 -2.3295 11 8 1.3345 -0.9155 -2.3381 12 8 3.2318 -1.3350 -3.4111 13 6 2.4505 -1.7824 -4.5503 14 6 3.3778 -2.2147 -5.6567 15 6 3.7952 -1.2927 -6.6041 16 6 4.6465 -1.6751 -7.6156 17 6 5.0836 -3.0104 -7.6928 18 6 5.9529 -3.4163 -8.7315 19 1 5.9811 -4.4513 -9.0385 20 6 6.7768 -2.4768 -9.3616 21 7 7.0125 -1.3247 -8.7885 22 14 7.5401 -2.8680 -11.0210 23 1 6.6259 -2.4235 -12.1035 24 1 8.8388 -2.1591 -11.1479 25 1 7.7625 -4.3321 -11.1308 26 6 4.6489 -3.9389 -6.7289 27 6 3.8021 -3.5329 -5.7229 28 1 5.1966 0.7801 1.9859 29 1 6.4290 0.0060 0.0074 30 1 5.2206 -0.7742 -1.9848 31 1 1.8226 -2.6223 -4.2529 32 1 1.8212 -0.9651 -4.9026 33 1 3.4543 -0.2695 -6.5458 34 1 4.9740 -0.9541 -8.3501 35 1 7.5833 -0.6733 -9.2253 36 1 4.9779 -4.9664 -6.7789 37 1 3.4669 -4.2438 -4.9823 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000777770483.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:35:43 Heat of formation + Delta-G solvation = -55.029503 kcal Electronic energy + Delta-G solvation = -24922.546727 eV Core-core repulsion = 20930.344165 eV Total energy + Delta-G solvation = -3992.202561 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 325.090 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.46900 -40.70443 -39.05354 -37.71752 -36.66773 -36.02185 -33.94398 -32.17725 -31.46845 -30.71011 -29.43317 -27.40861 -25.43847 -23.93338 -23.66349 -21.38721 -21.14518 -20.13216 -19.46294 -18.32136 -17.45351 -17.29426 -16.51611 -16.40576 -16.14386 -16.01019 -15.50318 -15.39590 -14.44993 -14.07322 -14.03668 -13.91918 -13.64301 -13.47160 -13.04223 -12.93155 -12.65362 -12.52386 -12.31241 -12.28170 -12.10001 -12.02390 -11.79368 -11.25014 -11.06032 -10.91869 -10.55858 -10.43446 -10.28167 -9.77417 -9.66750 -9.52782 -9.30623 -9.28898 -7.63361 -7.52458 -6.92965 -4.52907 -0.09577 0.38886 2.24315 2.24597 2.56442 2.77942 2.80592 2.94801 2.99300 3.01989 3.15785 3.39511 3.44790 3.71266 3.80980 4.24510 4.32470 4.49475 4.62851 4.69612 5.02191 5.29783 5.43914 5.53700 5.57855 5.60202 5.62229 5.73163 5.99433 6.13114 6.18183 6.25149 6.60507 6.81410 6.91548 7.11647 7.19927 7.37072 7.45242 7.66170 7.79170 7.89809 7.94161 8.12927 8.47778 8.72349 8.80193 10.00604 Molecular weight = 325.09amu Principal moments of inertia in cm(-1) A = 0.022654 B = 0.002404 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.713810 B =11645.920507 C =12406.619468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.377 5.377 2 C 0.247 3.753 3 C -0.002 4.002 4 C 0.133 3.867 5 F -0.123 7.123 6 C -0.123 4.123 7 C -0.074 4.074 8 C -0.066 4.066 9 C -0.051 4.051 10 C 0.495 3.505 11 O -0.499 6.499 12 O -0.338 6.338 13 C 0.137 3.863 14 C -0.239 4.239 15 C -0.074 4.074 16 C -0.171 4.171 17 C 0.119 3.881 18 C -0.455 4.455 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.783 5.783 22 Si 0.911 3.089 23 H -0.266 1.266 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.230 4.230 27 C -0.062 4.062 28 H 0.153 0.847 29 H 0.153 0.847 30 H 0.162 0.838 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.120 0.880 35 H 0.283 0.717 36 H 0.095 0.905 37 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.880 4.244 14.827 15.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.053 5.053 2 C -0.069 4.069 3 C -0.006 4.006 4 C 0.111 3.889 5 F -0.102 7.102 6 C -0.142 4.142 7 C -0.093 4.093 8 C -0.085 4.085 9 C -0.055 4.055 10 C 0.338 3.662 11 O -0.388 6.388 12 O -0.254 6.254 13 C 0.066 3.934 14 C -0.240 4.240 15 C -0.093 4.093 16 C -0.190 4.190 17 C 0.116 3.884 18 C -0.483 4.483 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.408 5.408 22 Si 0.735 3.265 23 H -0.191 1.191 24 H -0.202 1.202 25 H -0.185 1.185 26 C -0.250 4.250 27 C -0.080 4.080 28 H 0.171 0.829 29 H 0.171 0.829 30 H 0.180 0.820 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.138 0.862 35 H 0.094 0.906 36 H 0.113 0.887 37 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -0.133 4.451 14.769 15.425 hybrid contribution 0.630 -0.023 -0.588 0.862 sum 0.497 4.428 14.181 14.865 Atomic orbital electron populations 1.81126 1.11617 1.05919 1.06604 1.24829 0.91997 0.95494 0.94553 1.15825 0.85705 1.04823 0.94270 1.17394 0.90076 0.98769 0.82694 1.91575 1.80569 1.86818 1.51202 1.21391 0.91147 1.00703 1.00930 1.21338 1.01528 0.95109 0.91288 1.21735 0.91982 0.95083 0.99662 1.19128 0.93852 1.01396 0.91126 1.20908 0.86030 0.75465 0.83788 1.90881 1.14605 1.50950 1.82397 1.86766 1.42029 1.73230 1.23376 1.21840 0.92084 0.98190 0.81306 1.18631 1.11325 0.94812 0.99250 1.20545 0.97039 0.96441 0.95242 1.21298 0.99949 0.97601 1.00143 1.17696 0.89047 0.91542 0.90085 1.19708 1.17938 0.96078 1.14593 0.90103 1.25976 0.95407 0.94279 0.98756 1.69818 1.28089 1.06599 1.36264 0.86265 0.78577 0.80003 0.81681 1.19125 1.20167 1.18482 1.20970 1.06329 0.99207 0.98470 1.20394 0.96417 0.94186 0.97017 0.82915 0.82939 0.81992 0.91780 0.91728 0.89281 0.86215 0.90571 0.88682 0.89254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.38 -6.41 18.42 41.84 0.77 -5.64 16 2 C 0.25 3.67 12.41 -22.47 -0.28 3.39 16 3 C 0.00 -0.02 5.77 -106.46 -0.61 -0.64 16 4 C 0.13 1.18 7.27 -39.00 -0.28 0.89 16 5 F -0.12 -1.20 16.80 2.25 0.04 -1.16 16 6 C -0.12 -0.70 10.01 -39.47 -0.39 -1.10 16 7 C -0.07 -0.41 10.02 -39.57 -0.40 -0.81 16 8 C -0.07 -0.57 9.61 -39.21 -0.38 -0.95 16 9 C -0.05 -0.60 5.90 -104.65 -0.62 -1.22 16 10 C 0.49 7.66 7.87 34.59 0.27 7.94 16 11 O -0.50 -9.09 14.12 -19.24 -0.27 -9.37 16 12 O -0.34 -5.66 9.45 -40.57 -0.38 -6.04 16 13 C 0.14 2.47 5.59 36.00 0.20 2.67 16 14 C -0.24 -4.97 5.54 -104.33 -0.58 -5.55 16 15 C -0.07 -1.64 9.67 -39.66 -0.38 -2.02 16 16 C -0.17 -4.18 8.70 -38.87 -0.34 -4.52 16 17 C 0.12 3.00 5.57 -106.82 -0.60 2.40 16 18 C -0.45 -11.36 9.05 -37.74 -0.34 -11.70 16 19 H 0.08 1.94 7.91 -52.49 -0.41 1.53 16 20 C 0.08 1.77 5.14 -17.34 -0.09 1.68 16 21 N -0.78 -18.99 10.95 55.55 0.61 -18.38 16 22 Si 0.91 17.54 29.59 -169.99 -5.03 12.51 16 23 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 24 H -0.28 -5.21 7.11 56.52 0.40 -4.80 16 25 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 26 C -0.23 -5.33 9.80 -38.87 -0.38 -5.71 16 27 C -0.06 -1.31 9.67 -39.66 -0.38 -1.69 16 28 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 29 H 0.15 0.40 8.06 -52.49 -0.42 -0.03 16 30 H 0.16 1.39 7.60 -52.49 -0.40 0.99 16 31 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 32 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 33 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.12 3.03 6.16 -52.48 -0.32 2.70 16 35 H 0.28 6.21 8.30 -40.82 -0.34 5.87 16 36 H 0.09 2.06 8.06 -52.48 -0.42 1.64 16 37 H 0.09 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 344.64 15.07 5.19 5.19 Total: -1.00 -29.30 344.64 -7.88 -37.18 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -3.22 Total: 2.64 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -5.58 Total: -16.93 kcal Atomic # 7 Polarization: -25.40 SS G_CDS: 1.38 Total: -24.02 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.66 Total: -15.41 kcal Atomic # 9 Polarization: -1.20 SS G_CDS: 0.04 Total: -1.16 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.03 Total: 12.51 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -29.30 -7.88 -37.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000777770483.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.854 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds